Wall clock time and date at job start Sat Apr 11 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49949 * 2 1 4 4 C 1.53193 * 109.49437 * 120.05975 * 2 1 3 5 5 N 1.46932 * 108.77563 * 174.58603 * 4 2 1 6 6 C 1.36931 * 120.63273 * 126.37277 * 5 4 2 7 7 H 1.07997 * 119.99836 * 207.69172 * 6 5 4 8 8 C 1.38814 * 120.00018 * 27.68769 * 6 5 4 9 9 N 1.31616 * 120.00061 * 17.36294 * 8 6 5 10 10 Si 1.86793 * 120.00044 * 197.36386 * 8 6 5 11 11 H 1.48499 * 109.47482 * 59.99956 * 10 8 6 12 12 H 1.48497 * 109.47288 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47539 * 300.00126 * 10 8 6 14 14 C 1.46931 * 118.73674 * 306.39154 * 5 4 2 15 15 C 1.53195 * 108.77090 * 53.60944 * 14 5 4 16 16 C 1.53031 * 109.49662 * 239.93085 * 2 1 3 17 17 H 1.09000 * 109.46415 * 58.66962 * 16 2 1 18 18 N 1.46499 * 109.46423 * 298.70212 * 16 2 1 19 19 C 1.34783 * 120.00209 * 154.99590 * 18 16 2 20 20 O 1.21554 * 119.99636 * 0.02562 * 19 18 16 21 21 C 1.47777 * 119.99931 * 180.02562 * 19 18 16 22 22 C 1.39605 * 120.14468 * 359.73261 * 21 19 18 23 23 C 1.38122 * 119.83909 * 179.74536 * 22 21 19 24 24 F 1.35099 * 119.93669 * 180.22949 * 23 22 21 25 25 C 1.38624 * 120.12651 * 0.50403 * 23 22 21 26 26 C 1.38237 * 120.29336 * 359.76655 * 25 23 22 27 27 C 1.38157 * 120.16222 * 359.97438 * 26 25 23 28 28 Cl 1.73592 * 120.07053 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46857 * 300.00214 * 1 2 3 30 30 H 1.08995 * 109.47171 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46945 * 60.00186 * 1 2 3 32 32 H 1.09002 * 109.59132 * 294.37282 * 4 2 1 33 33 H 1.09007 * 109.58913 * 54.66183 * 4 2 1 34 34 H 0.97000 * 120.00280 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.58394 * 173.38918 * 14 5 4 36 36 H 1.09000 * 109.58664 * 293.68125 * 14 5 4 37 37 H 1.08997 * 109.50231 * 65.31861 * 15 14 5 38 38 H 1.09004 * 109.49474 * 185.38039 * 15 14 5 39 39 H 0.97005 * 120.00187 * 335.00504 * 18 16 2 40 40 H 1.08008 * 120.08006 * 359.97438 * 22 21 19 41 41 H 1.08002 * 119.85200 * 179.74742 * 25 23 22 42 42 H 1.07997 * 119.92291 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 3.5046 -0.8288 1.1700 6 6 4.2936 -0.3779 2.1943 7 1 5.2987 -0.0384 1.9925 8 6 3.8013 -0.3570 3.4921 9 7 2.7380 -1.0670 3.8041 10 14 4.6481 0.6789 4.7956 11 1 4.6312 2.1052 4.3826 12 1 3.9325 0.5299 6.0882 13 1 6.0536 0.2256 4.9523 14 6 4.1053 -1.4268 -0.0302 15 6 3.5709 -0.6955 -1.2656 16 6 2.0408 -0.7228 -1.2484 17 1 1.6582 -0.2240 -2.1389 18 7 1.5784 -2.1128 -1.2312 19 6 1.4502 -2.7947 -2.3867 20 8 1.7187 -2.2565 -3.4430 21 6 0.9832 -4.1967 -2.3693 22 6 0.6793 -4.8194 -1.1574 23 6 0.2383 -6.1283 -1.1489 24 9 -0.0607 -6.7314 0.0224 25 6 0.1074 -6.8262 -2.3395 26 6 0.4122 -6.2166 -3.5422 27 6 0.8492 -4.9061 -3.5651 28 17 1.2306 -4.1428 -5.0768 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.7637 -0.1572 2.1390 33 1 1.6033 -1.7203 1.3000 34 1 2.3942 -1.0528 4.7110 35 1 5.1895 -1.3246 0.0143 36 1 3.8395 -2.4825 -0.0844 37 1 3.9160 0.3384 -1.2541 38 1 3.9339 -1.1901 -2.1666 39 1 1.3643 -2.5424 -0.3882 40 1 0.7853 -4.2779 -0.2289 41 1 -0.2339 -7.8508 -2.3274 42 1 0.3084 -6.7660 -4.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942959945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:24 Heat of formation + Delta-G solvation = -49.487325 kcal Electronic energy + Delta-G solvation = -27943.054732 eV Core-core repulsion = 23863.529213 eV Total energy + Delta-G solvation = -4079.525520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.03277 -41.57316 -40.01533 -38.73895 -37.37736 -35.93903 -34.00585 -33.53408 -32.55259 -31.33730 -31.03086 -27.53405 -27.13118 -25.45177 -24.09869 -23.52051 -22.62628 -21.89764 -20.13593 -19.57632 -18.68332 -17.91155 -17.67340 -17.15656 -16.84429 -16.79417 -16.47142 -16.13101 -15.71959 -15.53616 -15.36756 -14.90310 -14.72181 -14.68972 -14.52222 -14.23736 -13.93395 -13.62136 -13.55011 -13.08123 -12.92506 -12.79425 -12.67073 -12.55576 -12.48444 -12.30880 -12.25239 -12.14616 -11.79382 -11.70106 -11.45660 -11.12816 -10.61710 -10.53269 -10.41079 -9.99072 -9.69665 -8.66116 -7.86973 -5.30689 -0.53549 -0.15557 1.08032 1.48054 1.50110 1.56352 1.67705 2.10087 2.48118 2.52054 2.98976 3.27890 3.43482 3.50736 3.67294 3.82981 3.88996 4.01467 4.05188 4.18108 4.30693 4.35205 4.52161 4.58061 4.66207 4.73920 4.73975 4.84147 4.86177 4.94235 4.96684 5.03887 5.09834 5.14396 5.29637 5.35127 5.49540 5.51399 5.58746 5.65958 5.76312 6.40032 6.49086 7.14588 7.16550 7.86409 8.37738 9.18595 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.003507 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.261712 B = 7982.969529 C = 9026.058493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.073 0.927 4 C 0.188 3.812 5 N -0.607 5.607 6 C -0.266 4.266 7 H 0.062 0.938 8 C -0.042 4.042 9 N -0.928 5.928 10 Si 0.961 3.039 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.149 3.851 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.083 0.917 18 N -0.702 5.702 19 C 0.551 3.449 20 O -0.543 6.543 21 C -0.113 4.113 22 C -0.115 4.115 23 C 0.089 3.911 24 F -0.137 7.137 25 C -0.100 4.100 26 C -0.081 4.081 27 C -0.010 4.010 28 Cl -0.036 7.036 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.005 0.995 34 H 0.250 0.750 35 H 0.046 0.954 36 H 0.013 0.987 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.402 0.598 40 H 0.143 0.857 41 H 0.185 0.815 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.431 -10.442 -14.649 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 H 0.092 0.908 4 C 0.062 3.938 5 N -0.330 5.330 6 C -0.396 4.396 7 H 0.079 0.921 8 C -0.238 4.238 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.023 3.977 15 C -0.173 4.173 16 C 0.064 3.936 17 H 0.101 0.899 18 N -0.354 5.354 19 C 0.337 3.663 20 O -0.422 6.422 21 C -0.117 4.117 22 C -0.135 4.135 23 C 0.070 3.930 24 F -0.115 7.115 25 C -0.119 4.119 26 C -0.099 4.099 27 C -0.039 4.039 28 Cl -0.007 7.007 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.023 0.977 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.239 0.761 40 H 0.161 0.839 41 H 0.203 0.797 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.259 -9.995 -15.314 20.065 hybrid contribution 0.511 0.405 1.740 1.858 sum -7.748 -9.590 -13.574 18.337 Atomic orbital electron populations 1.21661 0.93642 1.01831 1.01867 1.21947 0.96508 0.99864 0.95363 0.90847 1.20604 0.82375 0.95888 0.94904 1.44267 1.02257 1.69918 1.16547 1.19420 0.98059 1.35311 0.86821 0.92071 1.25645 0.99390 1.00122 0.98603 1.70129 1.26901 1.41412 1.18910 0.85443 0.77994 0.79194 0.78393 1.20630 1.21949 1.20514 1.20899 0.96250 0.94062 0.86456 1.22237 0.95749 1.01373 0.97987 1.20785 0.93532 0.80937 0.98302 0.89890 1.46067 1.66549 1.14074 1.08750 1.18220 0.78068 0.85899 0.84064 1.90826 1.50862 1.69959 1.30504 1.19566 1.04709 0.94626 0.92804 1.21339 0.99328 0.94662 0.98163 1.17729 1.01515 0.91311 0.82443 1.91551 1.90810 1.83063 1.46088 1.21658 0.98621 1.02437 0.89135 1.21272 0.96939 0.91352 1.00318 1.21274 1.00859 0.94454 0.87266 1.98420 1.92107 1.81688 1.28481 0.92652 0.92790 0.91662 0.92440 0.97686 0.94055 0.93494 0.96886 0.91283 0.91839 0.76063 0.83906 0.79742 0.80012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.05 71.98 0.65 -3.18 16 2 C -0.12 -4.04 2.67 -10.72 -0.03 -4.07 16 3 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 4 C 0.19 8.30 4.30 86.36 0.37 8.67 16 5 N -0.61 -29.15 2.99 -699.06 -2.09 -31.25 16 6 C -0.27 -14.29 9.58 84.03 0.81 -13.48 16 7 H 0.06 3.26 7.89 -2.91 -0.02 3.24 16 8 C -0.04 -2.25 4.91 84.86 0.42 -1.83 16 9 N -0.93 -52.43 11.19 21.65 0.24 -52.19 16 10 Si 0.96 43.97 29.59 68.60 2.03 46.00 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 14 C 0.15 6.15 6.26 86.36 0.54 6.69 16 15 C -0.13 -4.68 5.77 30.67 0.18 -4.50 16 16 C 0.17 5.52 2.22 45.02 0.10 5.62 16 17 H 0.08 2.67 7.58 -2.39 -0.02 2.65 16 18 N -0.70 -21.58 3.55 -445.36 -1.58 -23.16 16 19 C 0.55 16.79 7.73 86.77 0.67 17.46 16 20 O -0.54 -18.78 13.63 -3.88 -0.05 -18.83 16 21 C -0.11 -2.87 5.88 -20.07 -0.12 -2.99 16 22 C -0.12 -2.67 9.52 22.57 0.21 -2.46 16 23 C 0.09 1.77 7.29 22.33 0.16 1.93 16 24 F -0.14 -3.01 17.26 44.97 0.78 -2.23 16 25 C -0.10 -1.34 10.02 22.36 0.22 -1.11 16 26 C -0.08 -1.15 9.81 22.25 0.22 -0.93 16 27 C -0.01 -0.23 6.35 22.60 0.14 -0.08 16 28 Cl -0.04 -0.88 26.02 -2.72 -0.07 -0.95 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.50 7.53 -2.39 -0.02 1.48 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 2.94 6.03 -2.39 -0.01 2.93 16 33 H 0.01 0.24 6.65 -2.38 -0.02 0.22 16 34 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 35 H 0.05 1.95 7.93 -2.39 -0.02 1.94 16 36 H 0.01 0.55 7.75 -2.39 -0.02 0.53 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.40 12.39 4.77 -92.70 -0.44 11.95 16 40 H 0.14 3.43 6.41 -2.91 -0.02 3.41 16 41 H 0.19 1.16 8.06 -2.91 -0.02 1.13 16 42 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -63.41 354.56 4.42 -58.99 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.62 Total: 17.90 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 4.55 Total: 5.73 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -3.43 Total: -106.60 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.05 Total: -18.83 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.07 Total: -0.95 kcal Total: -63.41 4.42 -58.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942959945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.502 kcal (2) G-P(sol) polarization free energy of solvation -63.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds