Wall clock time and date at job start Sat Apr 11 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.52477 * 2 1 4 4 C 1.53192 * 109.49910 * 239.92407 * 2 1 3 5 5 N 1.46917 * 108.77945 * 185.41477 * 4 2 1 6 6 C 1.36938 * 120.63264 * 233.58736 * 5 4 2 7 7 H 1.08002 * 120.00067 * 27.68201 * 6 5 4 8 8 C 1.38816 * 120.00272 * 207.68932 * 6 5 4 9 9 N 1.31620 * 119.99791 * 17.36551 * 8 6 5 10 10 Si 1.86800 * 120.00086 * 197.36090 * 8 6 5 11 11 H 1.48495 * 109.46964 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46727 * 120.00029 * 10 8 6 13 13 H 1.48498 * 109.46921 * 239.99854 * 10 8 6 14 14 C 1.46925 * 118.74003 * 53.60065 * 5 4 2 15 15 C 1.53188 * 108.77926 * 306.39647 * 14 5 4 16 16 C 1.53032 * 109.49960 * 120.07899 * 2 1 3 17 17 H 1.09001 * 109.46609 * 301.34163 * 16 2 1 18 18 N 1.46500 * 109.45970 * 61.29912 * 16 2 1 19 19 C 1.34774 * 120.00297 * 205.06924 * 18 16 2 20 20 O 1.21558 * 119.99962 * 359.97438 * 19 18 16 21 21 C 1.47781 * 120.00343 * 179.97438 * 19 18 16 22 22 C 1.39613 * 120.13996 * 359.72244 * 21 19 18 23 23 C 1.38119 * 119.83468 * 179.69633 * 22 21 19 24 24 F 1.35101 * 119.93706 * 180.29493 * 23 22 21 25 25 C 1.38630 * 120.13183 * 0.58063 * 23 22 21 26 26 C 1.38245 * 120.28944 * 359.71936 * 25 23 22 27 27 C 1.38156 * 120.15685 * 359.97438 * 26 25 23 28 28 Cl 1.73603 * 120.06299 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47121 * 299.91667 * 1 2 3 30 30 H 1.08998 * 109.47363 * 59.91665 * 1 2 3 31 31 H 1.09004 * 109.46777 * 179.91855 * 1 2 3 32 32 H 1.09000 * 109.59034 * 65.61860 * 4 2 1 33 33 H 1.09012 * 109.58071 * 305.20041 * 4 2 1 34 34 H 0.97002 * 119.99650 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.58610 * 186.60946 * 14 5 4 36 36 H 1.08994 * 109.58603 * 66.18498 * 14 5 4 37 37 H 1.09008 * 109.49772 * 294.68746 * 15 14 5 38 38 H 1.08996 * 109.50270 * 174.58600 * 15 14 5 39 39 H 0.97000 * 119.99818 * 25.06652 * 18 16 2 40 40 H 1.08004 * 120.07948 * 359.97438 * 22 21 19 41 41 H 1.07999 * 119.85424 * 179.69516 * 25 23 22 42 42 H 1.07994 * 119.91642 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7237 -1.2496 5 7 3.5046 -0.8291 -1.1697 6 6 4.2936 -0.3792 -2.1945 7 1 3.9467 0.4207 -2.8320 8 6 5.5392 -0.9512 -2.4142 9 7 5.8279 -2.1219 -1.8866 10 14 6.8054 -0.0594 -3.4586 11 1 6.2385 1.2292 -3.9309 12 1 8.0206 0.2030 -2.6463 13 1 7.1640 -0.9014 -4.6280 14 6 4.1053 -1.4266 0.0306 15 6 3.5709 -0.6950 1.2659 16 6 2.0408 -0.7230 1.2483 17 1 1.6582 -0.2245 2.1389 18 7 1.5784 -2.1130 1.2308 19 6 1.4490 -2.7948 2.3861 20 8 1.7164 -2.2565 3.4427 21 6 0.9820 -4.1968 2.3685 22 6 0.6686 -4.8161 1.1571 23 6 0.2387 -6.1286 1.1474 24 9 -0.0595 -6.7318 -0.0241 25 6 0.1069 -6.8266 2.3380 26 6 0.4099 -6.2166 3.5410 27 6 0.8469 -4.9062 3.5641 28 17 1.2273 -4.1428 5.0761 29 1 -0.3633 0.5125 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.7638 -0.1579 -2.1389 33 1 1.6052 -1.7216 -1.2981 34 1 6.6985 -2.5215 -2.0398 35 1 5.1896 -1.3245 -0.0139 36 1 3.8376 -2.4817 0.0866 37 1 3.9159 0.3390 1.2540 38 1 3.9335 -1.1897 2.1670 39 1 1.3654 -2.5426 0.3876 40 1 0.7663 -4.2715 0.2295 41 1 -0.2343 -7.8512 2.3256 42 1 0.3046 -6.7658 4.4649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942959947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:32 Heat of formation + Delta-G solvation = -34.227334 kcal Electronic energy + Delta-G solvation = -27935.025559 eV Core-core repulsion = 23856.161762 eV Total energy + Delta-G solvation = -4078.863797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.16295 -40.39236 -38.87657 -37.40881 -36.42942 -34.31704 -32.84458 -31.72796 -31.04634 -30.46451 -29.82427 -25.96698 -25.42171 -24.35875 -23.00661 -22.04550 -21.17877 -20.74806 -18.71130 -18.46263 -16.99656 -16.82013 -16.73683 -16.12550 -15.92035 -15.27140 -14.87883 -14.79085 -14.60857 -14.10727 -13.86020 -13.74698 -13.65826 -13.34263 -13.20542 -12.81224 -12.71999 -12.56187 -12.13414 -11.85794 -11.51963 -11.40185 -11.38491 -11.26624 -11.06015 -10.80988 -10.72279 -10.35269 -10.23933 -10.07709 -9.77346 -9.55518 -9.46068 -9.41696 -8.86088 -8.60946 -8.48880 -6.72008 -5.82610 -3.25483 0.36975 0.68677 2.00365 2.67042 3.26879 3.35128 3.43546 3.45183 3.52634 3.85146 4.26644 4.39772 4.46103 4.73367 4.85126 5.10425 5.22215 5.27294 5.32822 5.33936 5.46475 5.53398 5.58048 5.63794 5.73571 5.87654 5.94548 6.05017 6.12535 6.24296 6.29851 6.31771 6.41606 6.60210 6.63244 6.72599 6.85428 6.94429 7.33802 7.63998 7.73263 7.76823 8.38563 8.40401 9.16862 9.80133 10.35743 11.25422 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.003531 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.618836 B = 7928.967158 C = 8490.366061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.083 0.917 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.255 4.255 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.174 3.826 15 C -0.154 4.154 16 C 0.162 3.838 17 H 0.076 0.924 18 N -0.703 5.703 19 C 0.551 3.449 20 O -0.517 6.517 21 C -0.092 4.092 22 C -0.109 4.109 23 C 0.099 3.901 24 F -0.131 7.131 25 C -0.122 4.122 26 C -0.093 4.093 27 C -0.001 4.001 28 Cl -0.024 7.024 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.011 0.989 34 H 0.253 0.747 35 H 0.086 0.914 36 H 0.017 0.983 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.399 0.601 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.716 -7.150 9.762 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 H 0.102 0.898 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.048 3.952 15 C -0.194 4.194 16 C 0.058 3.942 17 H 0.094 0.906 18 N -0.355 5.355 19 C 0.336 3.664 20 O -0.394 6.394 21 C -0.096 4.096 22 C -0.128 4.128 23 C 0.079 3.921 24 F -0.109 7.109 25 C -0.141 4.141 26 C -0.112 4.112 27 C -0.029 4.029 28 Cl 0.006 6.994 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.236 0.764 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.321 -6.765 10.559 18.295 hybrid contribution 0.661 -0.016 -1.148 1.325 sum -12.660 -6.781 9.411 17.170 Atomic orbital electron populations 1.21769 0.95727 1.01289 1.01192 1.21963 0.94577 1.00844 0.96656 0.89840 1.20907 0.86160 0.95976 0.94465 1.44076 0.99102 1.71558 1.16601 1.19210 0.98247 1.12380 1.08574 0.91611 1.25024 0.99869 0.95341 0.99217 1.70044 1.21838 1.14618 1.47977 0.86252 0.81752 0.79265 0.79669 1.20238 1.21553 1.21747 1.20730 0.99369 0.92887 0.82221 1.22570 0.94074 1.02009 1.00788 1.20938 0.95184 0.79977 0.98099 0.90594 1.46056 1.66588 1.14516 1.08325 1.17864 0.78807 0.85008 0.84720 1.90850 1.49599 1.69096 1.29875 1.19767 1.02330 0.95761 0.91776 1.21355 0.98937 0.93864 0.98689 1.17541 1.01276 0.91466 0.81773 1.91556 1.90742 1.83129 1.45483 1.21264 1.01091 1.01233 0.90553 1.20906 0.98820 0.92650 0.98813 1.21046 1.00176 0.93386 0.88294 1.98426 1.91957 1.81187 1.27832 0.93190 0.92689 0.93177 0.92403 0.97136 0.93668 0.89545 0.96447 0.91686 0.92559 0.76415 0.83345 0.83417 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.05 37.16 0.34 -1.48 16 2 C -0.12 -1.89 2.67 -90.50 -0.24 -2.14 16 3 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.15 2.88 5.50 -3.72 -0.02 2.86 16 5 N -0.59 -13.95 2.99 -172.32 -0.52 -14.46 16 6 C -0.25 -6.74 9.59 -15.06 -0.14 -6.88 16 7 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 8 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 9 N -0.90 -25.63 11.19 55.49 0.62 -25.01 16 10 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 C 0.17 4.01 5.05 -3.71 -0.02 4.00 16 15 C -0.15 -2.99 5.77 -26.61 -0.15 -3.14 16 16 C 0.16 2.69 2.21 -67.89 -0.15 2.54 16 17 H 0.08 1.27 7.57 -51.93 -0.39 0.88 16 18 N -0.70 -10.87 3.55 -54.73 -0.19 -11.06 16 19 C 0.55 8.72 7.73 -12.36 -0.10 8.63 16 20 O -0.52 -9.37 13.63 5.31 0.07 -9.30 16 21 C -0.09 -1.24 5.88 -104.94 -0.62 -1.86 16 22 C -0.11 -1.30 9.52 -39.11 -0.37 -1.67 16 23 C 0.10 1.07 7.29 -39.48 -0.29 0.79 16 24 F -0.13 -1.51 17.26 2.25 0.04 -1.47 16 25 C -0.12 -1.06 10.02 -39.43 -0.39 -1.46 16 26 C -0.09 -0.85 9.82 -39.61 -0.39 -1.24 16 27 C 0.00 -0.01 6.35 -39.07 -0.25 -0.26 16 28 Cl -0.02 -0.31 26.02 -51.86 -1.35 -1.66 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 32 H 0.06 1.10 7.93 -51.93 -0.41 0.68 16 33 H 0.01 0.20 6.64 -51.92 -0.34 -0.14 16 34 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 36 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 37 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.40 5.86 4.76 -40.82 -0.19 5.66 16 40 H 0.15 1.68 6.41 -52.48 -0.34 1.34 16 41 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -30.00 354.54 -9.19 -39.19 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.30 Total: 3.40 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.88 Total: -1.28 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.09 Total: -50.54 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.35 Total: -1.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.00 -9.19 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942959947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.968 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds