Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08001 * 119.99843 * 152.31122 * 6 5 4 8 8 C 1.38806 * 120.00009 * 332.30151 * 6 5 4 9 9 N 1.31616 * 120.00310 * 342.50379 * 8 6 5 10 10 Si 1.86803 * 120.00066 * 162.77785 * 8 6 5 11 11 H 1.48498 * 109.47141 * 89.99944 * 10 8 6 12 12 H 1.48497 * 109.47309 * 210.00396 * 10 8 6 13 13 H 1.48503 * 109.46936 * 330.00322 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09004 * 109.45585 * 58.65410 * 16 15 14 18 18 N 1.46501 * 109.46066 * 178.61495 * 16 15 14 19 19 C 1.34773 * 119.99886 * 274.99890 * 18 16 15 20 20 O 1.21563 * 120.00317 * 359.97438 * 19 18 16 21 21 C 1.47779 * 120.00192 * 180.02562 * 19 18 16 22 22 C 1.39636 * 120.13785 * 359.72261 * 21 19 18 23 23 C 1.37895 * 119.90966 * 179.72104 * 22 21 19 24 24 C 1.38402 * 120.21170 * 0.53482 * 23 22 21 25 25 C 1.38466 * 120.28773 * 359.76410 * 24 23 22 26 26 F 1.35102 * 119.95520 * 179.97438 * 25 24 23 27 27 C 1.38378 * 120.08014 * 359.95531 * 25 24 23 28 28 Cl 1.73605 * 120.10526 * 179.97438 * 27 25 24 29 29 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 30 30 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 31 31 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 33 33 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 34 34 H 0.96999 * 120.00787 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.58258 * 66.43251 * 14 5 4 36 36 H 1.09006 * 109.58702 * 186.71184 * 14 5 4 37 37 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 38 38 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 39 39 H 0.96998 * 119.99880 * 95.00332 * 18 16 15 40 40 H 1.07999 * 120.04764 * 0.02562 * 22 21 19 41 41 H 1.08006 * 119.89613 * 180.27440 * 23 22 21 42 42 H 1.08002 * 119.85623 * 179.74033 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0434 -1.9928 8 6 3.7997 -0.3542 -3.4908 9 7 2.7352 -1.0624 -3.8034 10 14 4.6502 0.6784 -4.7946 11 1 5.6904 -0.1373 -5.4713 12 1 3.6513 1.1349 -5.7940 13 1 5.2853 1.8585 -4.1548 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6968 -1.7569 1.2359 18 7 1.5265 -0.0521 2.4454 19 6 1.3972 -0.7374 3.5986 20 8 1.7068 -1.9120 3.6458 21 6 0.8779 -0.0612 4.8057 22 6 0.5257 1.2891 4.7561 23 6 0.0362 1.9139 5.8837 24 6 -0.0969 1.2098 7.0678 25 6 0.2556 -0.1279 7.1281 26 9 0.1233 -0.8087 8.2876 27 6 0.7426 -0.7683 6.0023 28 17 1.1853 -2.4453 6.0774 29 1 -0.3633 0.5129 0.8905 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7646 -0.1502 -2.1344 33 1 1.6021 -1.7153 -1.2969 34 1 2.3898 -1.0448 -4.7096 35 1 3.8375 -2.4818 0.0876 36 1 5.1898 -1.3268 -0.0144 37 1 3.9334 -1.1890 2.1675 38 1 3.9164 0.3392 1.2543 39 1 1.2790 0.8850 2.4076 40 1 0.6320 1.8422 3.8346 41 1 -0.2402 2.9573 5.8440 42 1 -0.4769 1.7059 7.9486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942979475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -34.489450 kcal Electronic energy + Delta-G solvation = -27295.657002 eV Core-core repulsion = 23216.781839 eV Total energy + Delta-G solvation = -4078.875163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.33467 -40.45211 -38.83446 -37.47237 -36.63100 -34.59330 -32.65081 -31.89099 -31.45704 -30.84805 -29.28211 -26.00926 -25.48764 -24.18875 -23.12246 -22.20116 -20.91998 -20.49679 -19.56257 -18.39627 -17.12221 -16.91238 -16.78209 -16.21562 -16.17565 -15.69870 -14.94885 -14.80329 -14.70877 -14.11858 -13.85148 -13.75255 -13.66578 -13.26644 -12.99919 -12.86031 -12.66785 -12.50409 -12.10542 -12.07591 -11.79654 -11.51353 -11.39650 -11.22976 -11.09303 -10.73411 -10.67710 -10.38776 -10.19093 -10.02745 -9.82731 -9.64379 -9.48166 -9.41898 -9.11676 -8.73850 -8.47415 -6.70879 -5.81506 -3.23017 0.22136 0.51881 1.82948 2.53697 3.05287 3.35813 3.37721 3.43074 3.44989 3.71616 4.18899 4.27494 4.45625 4.47681 4.67291 4.95851 5.16530 5.27632 5.31941 5.38022 5.43484 5.50050 5.55077 5.64862 5.69275 5.84792 6.05114 6.09857 6.12599 6.20366 6.32155 6.42181 6.47924 6.56801 6.65472 6.77397 6.89519 6.97498 7.30662 7.54043 7.64670 7.77946 8.25520 8.42213 9.18654 9.82061 10.38675 11.27366 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.002600 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.258982 B =10767.217632 C =11222.789007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.148 3.852 15 C -0.140 4.140 16 C 0.158 3.842 17 H 0.085 0.915 18 N -0.712 5.712 19 C 0.547 3.453 20 O -0.511 6.511 21 C -0.095 4.095 22 C -0.087 4.087 23 C -0.094 4.094 24 C -0.123 4.123 25 C 0.098 3.902 26 F -0.125 7.125 27 C -0.030 4.030 28 Cl -0.008 7.008 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.021 0.979 34 H 0.254 0.746 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.394 0.606 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 7.478 20.749 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.021 3.979 15 C -0.180 4.180 16 C 0.055 3.945 17 H 0.103 0.897 18 N -0.363 5.363 19 C 0.332 3.668 20 O -0.386 6.386 21 C -0.100 4.100 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.142 4.142 25 C 0.078 3.922 26 F -0.103 7.103 27 C -0.059 4.059 28 Cl 0.021 6.979 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.229 0.771 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.026 6.390 20.620 23.031 hybrid contribution 0.238 0.787 -0.434 0.930 sum -7.789 7.177 20.186 22.796 Atomic orbital electron populations 1.21731 0.95833 1.01583 1.00569 1.22101 0.94738 1.00657 0.96798 0.91418 1.20709 0.83099 0.97160 0.93588 1.44089 1.01740 1.69400 1.16299 1.19171 0.97604 1.35553 0.85874 0.91661 1.25024 0.98515 0.99126 0.96944 1.70029 1.25569 1.40197 1.18842 0.86324 0.78684 0.80399 0.81539 1.21389 1.21568 1.20511 1.20872 0.96697 0.94325 0.86047 1.22393 0.94643 1.01384 0.99616 1.21123 0.93910 0.97297 0.82177 0.89710 1.46221 1.65605 1.14210 1.10295 1.17931 0.79225 0.86756 0.82874 1.90891 1.48669 1.14987 1.84089 1.19869 1.02317 0.94216 0.93558 1.21430 0.96834 0.92674 0.99661 1.21068 0.98012 1.00779 0.91389 1.21326 1.00793 0.91739 1.00351 1.17315 1.02713 0.90735 0.81418 1.91560 1.93531 1.79644 1.45567 1.21113 1.01986 0.89317 0.93449 1.98449 1.90229 1.10945 1.98232 0.93946 0.92539 0.92921 0.88977 0.96140 0.93602 0.96141 0.92533 0.92543 0.92293 0.77149 0.83948 0.83642 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.03 37.16 0.34 -1.70 16 2 C -0.12 -2.11 2.44 -90.72 -0.22 -2.33 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.18 4.10 4.57 -3.93 -0.02 4.08 16 5 N -0.59 -14.49 3.00 -172.59 -0.52 -15.00 16 6 C -0.25 -6.78 9.59 -15.06 -0.14 -6.92 16 7 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -25.62 11.20 55.49 0.62 -25.00 16 10 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.15 3.12 6.52 -3.72 -0.02 3.09 16 15 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 16 C 0.16 2.62 1.88 -67.89 -0.13 2.49 16 17 H 0.08 1.61 7.57 -51.93 -0.39 1.21 16 18 N -0.71 -9.36 4.31 -54.73 -0.24 -9.59 16 19 C 0.55 7.80 7.73 -12.36 -0.10 7.71 16 20 O -0.51 -9.07 13.63 5.31 0.07 -8.99 16 21 C -0.10 -1.09 5.88 -104.95 -0.62 -1.71 16 22 C -0.09 -0.67 9.54 -39.19 -0.37 -1.04 16 23 C -0.09 -0.55 10.03 -39.65 -0.40 -0.95 16 24 C -0.12 -0.85 10.02 -39.44 -0.40 -1.24 16 25 C 0.10 0.99 7.27 -39.45 -0.29 0.70 16 26 F -0.12 -1.33 16.83 2.25 0.04 -1.29 16 27 C -0.03 -0.36 6.36 -39.00 -0.25 -0.61 16 28 Cl -0.01 -0.11 25.68 -51.86 -1.33 -1.45 16 29 H 0.04 0.51 7.36 -51.93 -0.38 0.12 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.39 4.00 6.34 -40.82 -0.26 3.74 16 40 H 0.14 0.77 6.40 -52.49 -0.34 0.44 16 41 H 0.15 0.40 8.06 -52.48 -0.42 -0.02 16 42 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -31.21 357.91 -9.29 -40.50 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.45 Total: 0.32 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.85 Total: -1.08 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.13 Total: -49.60 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.33 Total: -1.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.21 -9.29 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942979475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.010 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds