Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08001 * 119.99843 * 152.31122 * 6 5 4 8 8 C 1.38806 * 120.00009 * 332.30151 * 6 5 4 9 9 N 1.31616 * 120.00310 * 342.50379 * 8 6 5 10 10 Si 1.86803 * 120.00066 * 162.77785 * 8 6 5 11 11 H 1.48498 * 109.47141 * 89.99944 * 10 8 6 12 12 H 1.48497 * 109.47309 * 210.00396 * 10 8 6 13 13 H 1.48503 * 109.46936 * 330.00322 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09004 * 109.45585 * 58.65410 * 16 15 14 18 18 N 1.46501 * 109.46066 * 178.61495 * 16 15 14 19 19 C 1.34773 * 119.99886 * 274.99890 * 18 16 15 20 20 O 1.21563 * 120.00317 * 359.97438 * 19 18 16 21 21 C 1.47779 * 120.00192 * 180.02562 * 19 18 16 22 22 C 1.39636 * 120.13785 * 359.72261 * 21 19 18 23 23 C 1.37895 * 119.90966 * 179.72104 * 22 21 19 24 24 C 1.38402 * 120.21170 * 0.53482 * 23 22 21 25 25 C 1.38466 * 120.28773 * 359.76410 * 24 23 22 26 26 F 1.35102 * 119.95520 * 179.97438 * 25 24 23 27 27 C 1.38378 * 120.08014 * 359.95531 * 25 24 23 28 28 Cl 1.73605 * 120.10526 * 179.97438 * 27 25 24 29 29 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 30 30 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 31 31 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 33 33 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 34 34 H 0.96999 * 120.00787 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.58258 * 66.43251 * 14 5 4 36 36 H 1.09006 * 109.58702 * 186.71184 * 14 5 4 37 37 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 38 38 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 39 39 H 0.96998 * 119.99880 * 95.00332 * 18 16 15 40 40 H 1.07999 * 120.04764 * 0.02562 * 22 21 19 41 41 H 1.08006 * 119.89613 * 180.27440 * 23 22 21 42 42 H 1.08002 * 119.85623 * 179.74033 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0434 -1.9928 8 6 3.7997 -0.3542 -3.4908 9 7 2.7352 -1.0624 -3.8034 10 14 4.6502 0.6784 -4.7946 11 1 5.6904 -0.1373 -5.4713 12 1 3.6513 1.1349 -5.7940 13 1 5.2853 1.8585 -4.1548 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6968 -1.7569 1.2359 18 7 1.5265 -0.0521 2.4454 19 6 1.3972 -0.7374 3.5986 20 8 1.7068 -1.9120 3.6458 21 6 0.8779 -0.0612 4.8057 22 6 0.5257 1.2891 4.7561 23 6 0.0362 1.9139 5.8837 24 6 -0.0969 1.2098 7.0678 25 6 0.2556 -0.1279 7.1281 26 9 0.1233 -0.8087 8.2876 27 6 0.7426 -0.7683 6.0023 28 17 1.1853 -2.4453 6.0774 29 1 -0.3633 0.5129 0.8905 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7646 -0.1502 -2.1344 33 1 1.6021 -1.7153 -1.2969 34 1 2.3898 -1.0448 -4.7096 35 1 3.8375 -2.4818 0.0876 36 1 5.1898 -1.3268 -0.0144 37 1 3.9334 -1.1890 2.1675 38 1 3.9164 0.3392 1.2543 39 1 1.2790 0.8850 2.4076 40 1 0.6320 1.8422 3.8346 41 1 -0.2402 2.9573 5.8440 42 1 -0.4769 1.7059 7.9486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942979475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -52.701191 kcal Electronic energy + Delta-G solvation = -27296.446722 eV Core-core repulsion = 23216.781839 eV Total energy + Delta-G solvation = -4079.664883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.07477 -41.47643 -39.89747 -38.78877 -37.53194 -36.16074 -34.12059 -33.51483 -32.41427 -31.61329 -30.82950 -27.54649 -27.06133 -25.33470 -23.91882 -23.55089 -22.50631 -21.62007 -20.99638 -19.46963 -18.67854 -17.90260 -17.54292 -17.21608 -16.96987 -16.94331 -16.60387 -16.02538 -15.60726 -15.49751 -15.30413 -15.09815 -14.69803 -14.62059 -14.48805 -14.17629 -13.84108 -13.49174 -13.20330 -13.17717 -12.92378 -12.85692 -12.78952 -12.57825 -12.52417 -12.47243 -12.21781 -12.01853 -11.82628 -11.71510 -11.52150 -11.22188 -10.64427 -10.55126 -10.24474 -9.92188 -9.82338 -8.70563 -7.87016 -5.32196 -0.49281 -0.12901 0.99114 1.48888 1.50156 1.60148 1.72055 2.00345 2.52627 2.54017 2.99346 3.28173 3.45940 3.64712 3.69415 3.76672 3.83232 4.04228 4.09609 4.22901 4.34171 4.35896 4.58577 4.61030 4.70596 4.75042 4.80793 4.86614 4.95483 5.00732 5.02310 5.09027 5.13228 5.16814 5.31400 5.36725 5.51984 5.52485 5.58677 5.66809 5.75259 6.39226 6.54637 7.15149 7.21043 7.84706 8.37430 9.19936 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.002600 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.258982 B =10767.217632 C =11222.789007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.079 0.921 4 C 0.188 3.812 5 N -0.610 5.610 6 C -0.264 4.264 7 H 0.067 0.933 8 C -0.049 4.049 9 N -0.934 5.934 10 Si 0.968 3.032 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.268 1.268 14 C 0.144 3.856 15 C -0.125 4.125 16 C 0.172 3.828 17 H 0.056 0.944 18 N -0.698 5.698 19 C 0.546 3.454 20 O -0.554 6.554 21 C -0.117 4.117 22 C -0.075 4.075 23 C -0.076 4.076 24 C -0.105 4.105 25 C 0.081 3.919 26 F -0.135 7.135 27 C -0.053 4.053 28 Cl -0.044 7.044 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.064 0.936 33 H -0.012 1.012 34 H 0.251 0.749 35 H 0.003 0.997 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.413 0.587 40 H 0.171 0.829 41 H 0.192 0.808 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 11.581 22.360 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 H 0.097 0.903 4 C 0.062 3.938 5 N -0.333 5.333 6 C -0.394 4.394 7 H 0.085 0.915 8 C -0.244 4.244 9 N -0.580 5.580 10 Si 0.795 3.205 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.192 1.192 14 C 0.018 3.982 15 C -0.165 4.165 16 C 0.067 3.933 17 H 0.074 0.926 18 N -0.350 5.350 19 C 0.333 3.667 20 O -0.432 6.432 21 C -0.121 4.121 22 C -0.094 4.094 23 C -0.093 4.093 24 C -0.124 4.124 25 C 0.061 3.939 26 F -0.113 7.113 27 C -0.082 4.082 28 Cl -0.015 7.015 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.006 0.994 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.251 0.749 40 H 0.189 0.811 41 H 0.210 0.790 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.933 10.533 22.268 26.203 hybrid contribution 0.506 -0.468 -0.870 1.110 sum -8.427 10.065 21.398 25.103 Atomic orbital electron populations 1.21688 0.93486 1.01434 1.02467 1.21821 0.96567 1.00121 0.94195 0.90259 1.20520 0.82397 0.95608 0.95285 1.44362 1.02366 1.69822 1.16720 1.19505 0.98016 1.35131 0.86740 0.91510 1.25785 0.99421 1.00313 0.98887 1.70192 1.27146 1.41720 1.18981 0.85284 0.77412 0.78987 0.78783 1.21569 1.21711 1.19234 1.20954 0.96829 0.93792 0.86614 1.22182 0.95432 1.01311 0.97570 1.20661 0.93075 0.96159 0.83416 0.92561 1.45847 1.65317 1.14922 1.08896 1.18402 0.78295 0.86323 0.83659 1.90878 1.50484 1.17074 1.84809 1.19668 1.04749 0.95829 0.91808 1.21814 0.95116 0.90810 1.01642 1.21607 0.95458 1.02497 0.89759 1.21811 0.98478 0.90009 1.02110 1.17617 1.03728 0.91998 0.80590 1.91533 1.93720 1.80167 1.45926 1.21343 1.03990 0.87968 0.94909 1.98427 1.90788 1.13922 1.98353 0.90244 0.92368 0.94170 0.91813 0.99368 0.94033 0.97856 0.92479 0.92286 0.91137 0.74878 0.81135 0.79037 0.80148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.03 71.98 0.65 -3.02 16 2 C -0.11 -3.59 2.44 -10.86 -0.03 -3.62 16 3 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 4 C 0.19 8.80 4.57 86.22 0.39 9.20 16 5 N -0.61 -30.51 3.00 -699.94 -2.10 -32.61 16 6 C -0.26 -14.36 9.59 84.03 0.81 -13.55 16 7 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 8 C -0.05 -2.68 4.91 84.86 0.42 -2.26 16 9 N -0.93 -54.67 11.20 21.65 0.24 -54.43 16 10 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 C 0.14 6.26 6.52 86.36 0.56 6.82 16 15 C -0.12 -4.38 5.65 30.67 0.17 -4.20 16 16 C 0.17 5.60 1.88 45.02 0.08 5.69 16 17 H 0.06 2.20 7.57 -2.39 -0.02 2.19 16 18 N -0.70 -16.86 4.31 -445.33 -1.92 -18.78 16 19 C 0.55 15.07 7.73 86.77 0.67 15.74 16 20 O -0.55 -20.21 13.63 -3.91 -0.05 -20.26 16 21 C -0.12 -2.42 5.88 -20.08 -0.12 -2.54 16 22 C -0.08 -0.80 9.54 22.53 0.21 -0.58 16 23 C -0.08 -0.43 10.03 22.23 0.22 -0.21 16 24 C -0.11 -0.96 10.02 22.36 0.22 -0.74 16 25 C 0.08 1.46 7.27 22.36 0.16 1.63 16 26 F -0.13 -2.78 16.83 44.97 0.76 -2.02 16 27 C -0.05 -1.25 6.36 22.64 0.14 -1.10 16 28 Cl -0.04 -1.30 25.68 -2.72 -0.07 -1.37 16 29 H 0.08 1.61 7.36 -2.39 -0.02 1.59 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 3.34 6.04 -2.39 -0.01 3.33 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 36 H 0.06 2.41 7.93 -2.38 -0.02 2.39 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.41 6.71 6.34 -92.71 -0.59 6.12 16 40 H 0.17 0.80 6.40 -2.91 -0.02 0.78 16 41 H 0.19 -0.52 8.06 -2.91 -0.02 -0.55 16 42 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -73.49 357.91 3.93 -69.55 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.47 Total: 6.68 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 4.58 Total: 7.24 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.78 Total: -105.82 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.76 Total: -2.02 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.07 Total: -1.37 kcal Total: -73.49 3.93 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942979475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.853 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds