Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.49375 * 2 1 4 4 C 1.53188 * 109.49839 * 239.93819 * 2 1 3 5 5 N 1.46924 * 108.89264 * 185.30564 * 4 2 1 6 6 C 1.36939 * 120.63265 * 233.67938 * 5 4 2 7 7 H 1.07993 * 119.99973 * 152.76346 * 6 5 4 8 8 C 1.38812 * 119.99822 * 332.75993 * 6 5 4 9 9 N 1.31617 * 120.00065 * 159.74792 * 8 6 5 10 10 Si 1.86805 * 120.00375 * 339.74713 * 8 6 5 11 11 H 1.48498 * 109.47053 * 94.90781 * 10 8 6 12 12 H 1.48493 * 109.47215 * 214.91103 * 10 8 6 13 13 H 1.48501 * 109.46758 * 334.91167 * 10 8 6 14 14 C 1.47201 * 118.55575 * 53.54076 * 5 4 2 15 15 C 1.53191 * 108.85509 * 306.47735 * 14 5 4 16 16 C 1.53039 * 109.52632 * 120.07777 * 2 1 3 17 17 H 1.09002 * 109.45494 * 61.33103 * 16 2 1 18 18 N 1.46497 * 109.46156 * 301.35850 * 16 2 1 19 19 C 1.34775 * 119.99851 * 155.00102 * 18 16 2 20 20 O 1.21582 * 120.00271 * 359.97438 * 19 18 16 21 21 C 1.47619 * 120.00015 * 180.02562 * 19 18 16 22 22 C 1.39891 * 120.18090 * 89.71977 * 21 19 18 23 23 F 1.35098 * 120.10040 * 0.02562 * 22 21 19 24 24 C 1.38244 * 119.79105 * 179.72539 * 22 21 19 25 25 C 1.38287 * 120.15459 * 0.54901 * 24 22 21 26 26 C 1.38350 * 120.36395 * 359.72875 * 25 24 22 27 27 C 1.38081 * 120.20046 * 359.97438 * 26 25 24 28 28 Cl 1.73599 * 120.07579 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46908 * 300.06069 * 1 2 3 31 31 H 1.09000 * 109.46859 * 60.06498 * 1 2 3 32 32 H 1.09005 * 109.58687 * 305.16835 * 4 2 1 33 33 H 1.09005 * 109.58607 * 65.44923 * 4 2 1 34 34 H 0.97001 * 120.00289 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.53588 * 186.67267 * 14 5 4 36 36 H 1.09006 * 109.55928 * 66.29330 * 14 5 4 37 37 H 1.08999 * 109.49917 * 294.70007 * 15 14 5 38 38 H 1.09002 * 109.52625 * 174.61633 * 15 14 5 39 39 H 0.97002 * 120.00033 * 334.99973 * 18 16 2 40 40 H 1.07996 * 119.92287 * 180.29916 * 24 22 21 41 41 H 1.08003 * 119.81810 * 179.74185 * 25 24 22 42 42 H 1.07998 * 119.90060 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7234 -1.2498 5 7 3.5049 -0.8278 -1.1737 6 6 4.2910 -0.3760 -2.1999 7 1 5.2990 -0.0428 -2.0016 8 6 3.7922 -0.3462 -3.4949 9 7 4.3535 0.4288 -4.3987 10 14 2.3244 -1.4060 -3.9553 11 1 1.0790 -0.6064 -3.8337 12 1 2.4746 -1.8786 -5.3550 13 1 2.2528 -2.5755 -3.0429 14 6 4.1061 -1.4253 0.0298 15 6 3.5716 -0.6941 1.2653 16 6 2.0416 -0.7229 1.2482 17 1 1.6982 -1.7573 1.2349 18 7 1.5273 -0.0532 2.4453 19 6 1.4000 -0.7386 3.5987 20 8 1.7115 -1.9129 3.6456 21 6 0.8812 -0.0640 4.8048 22 6 -0.4930 -0.0497 5.0665 23 9 -1.3510 -0.6542 4.2160 24 6 -0.9695 0.5796 6.2014 25 6 -0.0926 1.2031 7.0701 26 6 1.2671 1.1979 6.8145 27 6 1.7598 0.5686 5.6886 28 17 3.4666 0.5635 5.3714 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8895 31 1 -0.3633 0.5128 -0.8906 32 1 1.6058 -1.7214 -1.2983 33 1 1.7611 -0.1588 -2.1391 34 1 4.0047 0.4500 -5.3036 35 1 5.1903 -1.3227 -0.0149 36 1 3.8388 -2.4806 0.0858 37 1 3.9161 0.3400 1.2535 38 1 3.9347 -1.1882 2.1665 39 1 1.2784 0.8836 2.4078 40 1 -2.0295 0.5877 6.4081 41 1 -0.4712 1.6967 7.9530 42 1 1.9452 1.6869 7.4982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944307621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -38.970822 kcal Electronic energy + Delta-G solvation = -27788.728659 eV Core-core repulsion = 23709.659169 eV Total energy + Delta-G solvation = -4079.069490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.38972 -40.40021 -39.09451 -37.75053 -36.87842 -34.70393 -32.67506 -32.01241 -31.63963 -31.01230 -29.93092 -26.28336 -25.48600 -24.09555 -23.31475 -22.56695 -20.90646 -20.68475 -19.76428 -18.44568 -17.66447 -17.21597 -16.76286 -16.49220 -15.92003 -15.69324 -15.23704 -14.97724 -14.57851 -14.30222 -14.06187 -13.97115 -13.65007 -13.59639 -13.26817 -13.19581 -12.69475 -12.57502 -12.37256 -12.13810 -11.90700 -11.82053 -11.64373 -11.46517 -11.41654 -10.91042 -10.67759 -10.51017 -10.31872 -10.20233 -9.94090 -9.70974 -9.49349 -9.45363 -9.25883 -8.86944 -8.63966 -6.99322 -5.94944 -3.30887 0.31694 0.46039 1.56567 2.41123 2.77820 3.07092 3.31617 3.49323 3.52473 3.65206 4.16441 4.36687 4.42094 4.52700 4.58708 4.82548 4.91345 5.00996 5.24050 5.28433 5.33745 5.39173 5.43880 5.45937 5.60820 5.69646 5.88231 5.89405 6.02857 6.08574 6.10634 6.12990 6.27747 6.37257 6.40090 6.59615 6.63433 6.68893 6.71415 6.92463 7.46045 7.95005 8.10506 8.32591 8.93055 9.71508 10.09297 11.20974 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.003278 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.601261 B = 8539.054904 C = 9390.113056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 H 0.079 0.921 4 C 0.136 3.864 5 N -0.606 5.606 6 C -0.258 4.258 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.909 5.909 10 Si 0.880 3.120 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.268 1.268 14 C 0.151 3.849 15 C -0.141 4.141 16 C 0.157 3.843 17 H 0.085 0.915 18 N -0.705 5.705 19 C 0.563 3.437 20 O -0.518 6.518 21 C -0.152 4.152 22 C 0.144 3.856 23 F -0.121 7.121 24 C -0.152 4.152 25 C -0.065 4.065 26 C -0.123 4.123 27 C 0.018 3.982 28 Cl -0.035 7.035 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.399 0.601 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 4.244 24.873 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.097 0.903 4 C 0.010 3.990 5 N -0.330 5.330 6 C -0.386 4.386 7 H 0.104 0.896 8 C -0.176 4.176 9 N -0.552 5.552 10 Si 0.710 3.290 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.193 1.193 14 C 0.024 3.976 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.103 0.897 18 N -0.355 5.355 19 C 0.346 3.654 20 O -0.393 6.393 21 C -0.157 4.157 22 C 0.124 3.876 23 F -0.100 7.100 24 C -0.171 4.171 25 C -0.083 4.083 26 C -0.142 4.142 27 C -0.010 4.010 28 Cl -0.005 7.005 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.233 0.767 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.502 3.396 24.616 26.977 hybrid contribution -1.013 -0.145 -0.534 1.155 sum -11.515 3.251 24.081 26.890 Atomic orbital electron populations 1.21798 0.95522 1.01759 1.01234 1.21994 0.94901 1.01076 0.95640 0.90276 1.21370 0.84997 0.97269 0.95385 1.44464 1.00592 1.70102 1.17799 1.18924 0.98518 1.36034 0.85154 0.89605 1.25271 0.98007 0.98666 0.95626 1.69828 1.43090 1.38110 1.04151 0.86986 0.82641 0.82436 0.76932 1.21631 1.23132 1.19332 1.20948 0.97360 0.94202 0.85075 1.22385 0.94280 1.01935 0.99532 1.21100 0.94202 0.97175 0.82161 0.89671 1.46209 1.64945 1.14413 1.09913 1.17749 0.78481 0.86553 0.82618 1.90840 1.49101 1.15207 1.84189 1.19966 0.92403 1.04150 0.99160 1.17486 0.85363 0.95201 0.89540 1.91589 1.68727 1.80593 1.69059 1.21235 1.02038 1.00068 0.93727 1.21118 0.91934 0.96488 0.98767 1.21123 0.96339 1.00384 0.96318 1.20744 0.86293 0.98472 0.95464 1.98446 1.09942 1.96980 1.95175 0.92828 0.93187 0.92403 0.95376 0.90604 0.92775 0.91527 0.95589 0.91688 0.92083 0.76723 0.83411 0.83485 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.03 37.16 0.34 -1.78 16 2 C -0.12 -1.97 2.46 -90.50 -0.22 -2.19 16 3 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 4 C 0.14 2.94 3.47 -3.71 -0.01 2.92 16 5 N -0.61 -14.38 2.79 -172.10 -0.48 -14.86 16 6 C -0.26 -7.19 10.06 -15.06 -0.15 -7.34 16 7 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 8 C 0.02 0.67 5.24 -17.43 -0.09 0.57 16 9 N -0.91 -27.81 13.97 55.49 0.78 -27.03 16 10 Si 0.88 22.38 24.35 -169.99 -4.14 18.24 16 11 H -0.29 -7.03 6.70 56.52 0.38 -6.65 16 12 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 13 H -0.27 -6.74 6.46 56.52 0.36 -6.38 16 14 C 0.15 3.05 6.52 -3.56 -0.02 3.03 16 15 C -0.14 -2.46 5.65 -26.61 -0.15 -2.61 16 16 C 0.16 2.58 1.88 -67.89 -0.13 2.45 16 17 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 18 N -0.71 -9.79 4.37 -54.78 -0.24 -10.03 16 19 C 0.56 8.37 5.92 -12.43 -0.07 8.29 16 20 O -0.52 -9.64 16.77 5.29 0.09 -9.55 16 21 C -0.15 -1.80 5.64 -104.88 -0.59 -2.39 16 22 C 0.14 1.50 7.29 -38.96 -0.28 1.21 16 23 F -0.12 -1.46 16.83 2.25 0.04 -1.42 16 24 C -0.15 -1.03 10.01 -39.56 -0.40 -1.43 16 25 C -0.06 -0.34 10.03 -39.52 -0.40 -0.74 16 26 C -0.12 -0.83 9.81 -39.60 -0.39 -1.22 16 27 C 0.02 0.18 6.35 -39.07 -0.25 -0.07 16 28 Cl -0.03 -0.39 28.04 -51.86 -1.45 -1.84 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.62 7.37 -51.93 -0.38 0.24 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.62 6.98 -51.93 -0.36 0.25 16 33 H 0.08 1.78 4.49 -51.93 -0.23 1.55 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 1.34 7.94 -51.93 -0.41 0.93 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.40 4.64 8.29 -40.82 -0.34 4.30 16 40 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 42 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -33.18 358.77 -8.37 -41.55 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.54 Total: 0.82 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.82 Total: -1.27 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.06 Total: -51.93 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.24 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.45 Total: -1.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.18 -8.37 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944307621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.578 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds