Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.49375 * 2 1 4 4 C 1.53188 * 109.49839 * 239.93819 * 2 1 3 5 5 N 1.46924 * 108.89264 * 185.30564 * 4 2 1 6 6 C 1.36939 * 120.63265 * 233.67938 * 5 4 2 7 7 H 1.07993 * 119.99973 * 152.76346 * 6 5 4 8 8 C 1.38812 * 119.99822 * 332.75993 * 6 5 4 9 9 N 1.31617 * 120.00065 * 159.74792 * 8 6 5 10 10 Si 1.86805 * 120.00375 * 339.74713 * 8 6 5 11 11 H 1.48498 * 109.47053 * 94.90781 * 10 8 6 12 12 H 1.48493 * 109.47215 * 214.91103 * 10 8 6 13 13 H 1.48501 * 109.46758 * 334.91167 * 10 8 6 14 14 C 1.47201 * 118.55575 * 53.54076 * 5 4 2 15 15 C 1.53191 * 108.85509 * 306.47735 * 14 5 4 16 16 C 1.53039 * 109.52632 * 120.07777 * 2 1 3 17 17 H 1.09002 * 109.45494 * 61.33103 * 16 2 1 18 18 N 1.46497 * 109.46156 * 301.35850 * 16 2 1 19 19 C 1.34775 * 119.99851 * 155.00102 * 18 16 2 20 20 O 1.21582 * 120.00271 * 359.97438 * 19 18 16 21 21 C 1.47619 * 120.00015 * 180.02562 * 19 18 16 22 22 C 1.39891 * 120.18090 * 89.71977 * 21 19 18 23 23 F 1.35098 * 120.10040 * 0.02562 * 22 21 19 24 24 C 1.38244 * 119.79105 * 179.72539 * 22 21 19 25 25 C 1.38287 * 120.15459 * 0.54901 * 24 22 21 26 26 C 1.38350 * 120.36395 * 359.72875 * 25 24 22 27 27 C 1.38081 * 120.20046 * 359.97438 * 26 25 24 28 28 Cl 1.73599 * 120.07579 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46908 * 300.06069 * 1 2 3 31 31 H 1.09000 * 109.46859 * 60.06498 * 1 2 3 32 32 H 1.09005 * 109.58687 * 305.16835 * 4 2 1 33 33 H 1.09005 * 109.58607 * 65.44923 * 4 2 1 34 34 H 0.97001 * 120.00289 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.53588 * 186.67267 * 14 5 4 36 36 H 1.09006 * 109.55928 * 66.29330 * 14 5 4 37 37 H 1.08999 * 109.49917 * 294.70007 * 15 14 5 38 38 H 1.09002 * 109.52625 * 174.61633 * 15 14 5 39 39 H 0.97002 * 120.00033 * 334.99973 * 18 16 2 40 40 H 1.07996 * 119.92287 * 180.29916 * 24 22 21 41 41 H 1.08003 * 119.81810 * 179.74185 * 25 24 22 42 42 H 1.07998 * 119.90060 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7234 -1.2498 5 7 3.5049 -0.8278 -1.1737 6 6 4.2910 -0.3760 -2.1999 7 1 5.2990 -0.0428 -2.0016 8 6 3.7922 -0.3462 -3.4949 9 7 4.3535 0.4288 -4.3987 10 14 2.3244 -1.4060 -3.9553 11 1 1.0790 -0.6064 -3.8337 12 1 2.4746 -1.8786 -5.3550 13 1 2.2528 -2.5755 -3.0429 14 6 4.1061 -1.4253 0.0298 15 6 3.5716 -0.6941 1.2653 16 6 2.0416 -0.7229 1.2482 17 1 1.6982 -1.7573 1.2349 18 7 1.5273 -0.0532 2.4453 19 6 1.4000 -0.7386 3.5987 20 8 1.7115 -1.9129 3.6456 21 6 0.8812 -0.0640 4.8048 22 6 -0.4930 -0.0497 5.0665 23 9 -1.3510 -0.6542 4.2160 24 6 -0.9695 0.5796 6.2014 25 6 -0.0926 1.2031 7.0701 26 6 1.2671 1.1979 6.8145 27 6 1.7598 0.5686 5.6886 28 17 3.4666 0.5635 5.3714 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8895 31 1 -0.3633 0.5128 -0.8906 32 1 1.6058 -1.7214 -1.2983 33 1 1.7611 -0.1588 -2.1391 34 1 4.0047 0.4500 -5.3036 35 1 5.1903 -1.3227 -0.0149 36 1 3.8388 -2.4806 0.0858 37 1 3.9161 0.3400 1.2535 38 1 3.9347 -1.1882 2.1665 39 1 1.2784 0.8836 2.4078 40 1 -2.0295 0.5877 6.4081 41 1 -0.4712 1.6967 7.9530 42 1 1.9452 1.6869 7.4982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944307621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -60.368261 kcal Electronic energy + Delta-G solvation = -27789.656521 eV Core-core repulsion = 23709.659169 eV Total energy + Delta-G solvation = -4079.997352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.16998 -41.48779 -40.07865 -39.09134 -37.61659 -36.30532 -34.23955 -33.65999 -32.72568 -31.63985 -31.42870 -27.73557 -27.10029 -25.29249 -24.09302 -23.88679 -22.49181 -21.78326 -21.28813 -19.44842 -18.83301 -18.32684 -17.94483 -17.79192 -17.03816 -16.68357 -16.37328 -16.09330 -15.95719 -15.70711 -15.29628 -15.11836 -14.93310 -14.78844 -14.55706 -14.36450 -14.33751 -14.11852 -13.49641 -13.27374 -13.21742 -13.04238 -12.74539 -12.60577 -12.49535 -12.38892 -12.20989 -12.10420 -12.00401 -11.78889 -11.55314 -11.40164 -11.19673 -10.72478 -10.18902 -10.16420 -9.88486 -9.00152 -8.18146 -5.50867 -0.32664 -0.13441 0.85076 1.27280 1.29826 1.40475 1.48927 1.93281 2.27526 2.39182 2.98390 3.01704 3.25910 3.40532 3.59584 3.73041 3.78257 3.89229 3.98287 4.10328 4.21237 4.26174 4.39320 4.47904 4.53923 4.62186 4.64023 4.72174 4.82023 4.84582 4.90642 4.94370 4.99349 5.01505 5.11385 5.14049 5.23358 5.32707 5.41504 5.56460 5.83656 6.10543 6.32993 6.86718 6.98630 7.57828 7.99124 9.01554 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.003278 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.601261 B = 8539.054904 C = 9390.113056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.079 0.921 4 C 0.131 3.869 5 N -0.619 5.619 6 C -0.248 4.248 7 H 0.055 0.945 8 C -0.031 4.031 9 N -0.955 5.955 10 Si 0.940 3.060 11 H -0.270 1.270 12 H -0.310 1.310 13 H -0.265 1.265 14 C 0.148 3.852 15 C -0.127 4.127 16 C 0.167 3.833 17 H 0.069 0.931 18 N -0.695 5.695 19 C 0.566 3.434 20 O -0.563 6.563 21 C -0.178 4.178 22 C 0.123 3.877 23 F -0.138 7.138 24 C -0.139 4.139 25 C -0.043 4.043 26 C -0.114 4.114 27 C 0.004 3.996 28 Cl -0.056 7.056 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.412 0.588 40 H 0.177 0.823 41 H 0.194 0.806 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 5.297 28.228 31.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.097 0.903 4 C 0.006 3.994 5 N -0.343 5.343 6 C -0.377 4.377 7 H 0.072 0.928 8 C -0.226 4.226 9 N -0.601 5.601 10 Si 0.769 3.231 11 H -0.196 1.196 12 H -0.239 1.239 13 H -0.189 1.189 14 C 0.022 3.978 15 C -0.167 4.167 16 C 0.063 3.937 17 H 0.087 0.913 18 N -0.345 5.345 19 C 0.351 3.649 20 O -0.442 6.442 21 C -0.182 4.182 22 C 0.103 3.897 23 F -0.117 7.117 24 C -0.158 4.158 25 C -0.061 4.061 26 C -0.132 4.132 27 C -0.024 4.024 28 Cl -0.026 7.026 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.248 0.752 40 H 0.195 0.805 41 H 0.211 0.789 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.329 4.471 28.018 31.347 hybrid contribution -0.110 -0.427 -1.414 1.482 sum -13.439 4.044 26.603 30.078 Atomic orbital electron populations 1.21764 0.93081 1.02212 1.02699 1.21794 0.96822 1.00229 0.93636 0.90250 1.21407 0.83615 0.97529 0.96892 1.44563 1.01456 1.70585 1.17685 1.18856 0.97807 1.34672 0.86404 0.92761 1.25844 1.01267 0.99853 0.95615 1.69946 1.45502 1.40051 1.04569 0.85998 0.80346 0.80827 0.75898 1.19617 1.23936 1.18918 1.21051 0.97191 0.94569 0.84977 1.22191 0.95145 1.01375 0.97995 1.20766 0.93312 0.96546 0.83116 0.91273 1.45995 1.64506 1.14902 1.09078 1.18221 0.77274 0.86010 0.83404 1.90806 1.51053 1.17289 1.85033 1.19760 0.93559 1.06318 0.98603 1.17816 0.84597 0.96519 0.90804 1.91543 1.69038 1.81200 1.69884 1.21646 1.03867 0.98252 0.92018 1.21680 0.90748 0.94462 0.99170 1.21539 0.97705 0.98894 0.95059 1.20922 0.85080 0.99769 0.96604 1.98437 1.11638 1.97154 1.95417 0.92900 0.90789 0.91898 0.95262 0.92401 0.92860 0.92053 0.95246 0.91710 0.91693 0.75188 0.80538 0.78870 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.03 71.98 0.65 -3.13 16 2 C -0.10 -3.45 2.46 -10.72 -0.03 -3.48 16 3 H 0.08 2.65 8.14 -2.38 -0.02 2.64 16 4 C 0.13 5.58 3.47 86.36 0.30 5.88 16 5 N -0.62 -29.70 2.79 -698.40 -1.95 -31.64 16 6 C -0.25 -14.21 10.06 84.03 0.85 -13.36 16 7 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 8 C -0.03 -1.81 5.24 84.86 0.44 -1.37 16 9 N -0.95 -60.14 13.97 21.65 0.30 -59.84 16 10 Si 0.94 46.92 24.35 68.60 1.67 48.60 16 11 H -0.27 -12.52 6.70 99.48 0.67 -11.85 16 12 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 13 H -0.26 -12.87 6.46 99.48 0.64 -12.23 16 14 C 0.15 6.07 6.52 86.31 0.56 6.64 16 15 C -0.13 -4.43 5.65 30.67 0.17 -4.26 16 16 C 0.17 5.41 1.88 45.02 0.08 5.50 16 17 H 0.07 2.52 7.58 -2.39 -0.02 2.50 16 18 N -0.70 -18.71 4.37 -445.50 -1.94 -20.65 16 19 C 0.57 16.59 5.92 86.72 0.51 17.10 16 20 O -0.56 -21.25 16.77 -3.97 -0.07 -21.31 16 21 C -0.18 -3.97 5.64 -20.03 -0.11 -4.08 16 22 C 0.12 2.28 7.29 22.67 0.17 2.44 16 23 F -0.14 -3.15 16.83 44.97 0.76 -2.39 16 24 C -0.14 -1.30 10.01 22.28 0.22 -1.07 16 25 C -0.04 -0.22 10.03 22.31 0.22 0.01 16 26 C -0.11 -1.07 9.81 22.26 0.22 -0.85 16 27 C 0.00 0.07 6.35 22.60 0.14 0.21 16 28 Cl -0.06 -1.19 28.04 -2.72 -0.08 -1.26 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.65 7.37 -2.38 -0.02 1.63 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.25 6.98 -2.38 -0.02 1.23 16 33 H 0.06 2.68 4.49 -2.38 -0.01 2.67 16 34 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 35 H 0.06 2.54 7.94 -2.39 -0.02 2.52 16 36 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.41 8.98 8.29 -92.71 -0.77 8.21 16 40 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 41 H 0.19 -0.71 8.06 -2.91 -0.02 -0.73 16 42 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -75.80 358.77 3.29 -72.51 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.18 Total: 9.81 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 4.41 Total: 6.18 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -3.59 Total: -112.13 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.07 Total: -21.31 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.76 Total: -2.39 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.67 Total: 48.60 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -75.80 3.29 -72.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944307621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.145 kcal (2) G-P(sol) polarization free energy of solvation -75.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds