Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.45435 * 2 1 4 4 C 1.53037 * 109.48833 * 119.94867 * 2 1 3 5 5 C 1.53188 * 109.34665 * 181.35365 * 4 2 1 6 6 N 1.46928 * 108.77271 * 305.38093 * 5 4 2 7 7 C 1.36940 * 120.62972 * 233.62723 * 6 5 4 8 8 H 1.07997 * 119.99554 * 27.66128 * 7 6 5 9 9 C 1.38808 * 119.99995 * 207.65639 * 7 6 5 10 10 N 1.31630 * 120.00093 * 17.37779 * 9 7 6 11 11 Si 1.86794 * 120.00229 * 197.37132 * 9 7 6 12 12 H 1.48498 * 109.47060 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47531 * 120.00300 * 11 9 7 14 14 H 1.48497 * 109.47567 * 240.00344 * 11 9 7 15 15 C 1.46925 * 118.73938 * 53.60197 * 6 5 4 16 16 C 1.53041 * 109.46250 * 240.03064 * 2 1 3 17 17 H 1.09006 * 109.49478 * 298.60235 * 16 2 1 18 18 N 1.46503 * 109.49677 * 58.66363 * 16 2 1 19 19 C 1.34773 * 120.00064 * 204.93791 * 18 16 2 20 20 O 1.21577 * 120.00006 * 0.02562 * 19 18 16 21 21 C 1.47630 * 119.99964 * 179.97438 * 19 18 16 22 22 C 1.39700 * 120.15632 * 0.02702 * 21 19 18 23 23 C 1.37792 * 119.89529 * 179.97438 * 22 21 19 24 24 C 1.38616 * 120.20175 * 359.74992 * 23 22 21 25 25 Cl 1.73602 * 119.84134 * 180.25362 * 24 23 22 26 26 C 1.38351 * 120.31407 * 0.50361 * 24 23 22 27 27 C 1.38253 * 120.10289 * 359.49737 * 26 24 23 28 28 F 1.35103 * 120.10332 * 180.27447 * 27 26 24 29 29 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47081 * 299.96978 * 1 2 3 31 31 H 1.08999 * 109.47279 * 59.96866 * 1 2 3 32 32 H 1.09001 * 109.47182 * 61.39329 * 4 2 1 33 33 H 1.09004 * 109.52175 * 301.34003 * 4 2 1 34 34 H 1.08995 * 109.59331 * 185.59602 * 5 4 2 35 35 H 1.09002 * 109.58444 * 65.16330 * 5 4 2 36 36 H 0.96996 * 119.99869 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.58651 * 186.60183 * 15 6 5 38 38 H 1.09002 * 109.58350 * 66.18675 * 15 6 5 39 39 H 0.97002 * 119.99870 * 24.93695 * 18 16 2 40 40 H 1.08004 * 120.04765 * 359.95099 * 22 21 19 41 41 H 1.08000 * 119.89868 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.94960 * 179.76300 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0405 -0.7202 1.2501 5 6 3.5720 -0.6888 1.2639 6 7 4.0679 -1.2496 -0.0003 7 6 4.9753 -2.2752 -0.0003 8 1 5.0080 -2.9672 0.8282 9 6 5.8530 -2.4254 -1.0652 10 7 6.0598 -1.4238 -1.8939 11 14 6.7409 -4.0486 -1.3220 12 1 6.3377 -5.0066 -0.2614 13 1 6.3827 -4.6038 -2.6520 14 1 8.2077 -3.8263 -1.2572 15 6 3.5713 -0.6894 -1.2646 16 6 2.0399 -0.7208 -1.2500 17 1 1.6973 -1.7556 -1.2385 18 7 1.5256 -0.0488 -2.4460 19 6 1.3984 -0.7320 -3.6007 20 8 1.7099 -1.9062 -3.6498 21 6 0.8796 -0.0550 -4.8056 22 6 0.5202 1.2940 -4.7528 23 6 0.0371 1.9207 -5.8808 24 6 -0.0885 1.2182 -7.0691 25 17 -0.6920 2.0188 -8.4864 26 6 0.2601 -0.1193 -7.1298 27 6 0.7462 -0.7609 -6.0057 28 9 1.0917 -2.0656 -6.0664 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 1.6979 -1.7549 1.2387 33 1 1.6583 -0.2203 2.1401 34 1 3.9423 -1.2848 2.0981 35 1 3.9154 0.3406 1.3667 36 1 6.6734 -1.5287 -2.6378 37 1 3.9412 -1.2857 -2.0987 38 1 3.9148 0.3399 -1.3680 39 1 1.2767 0.8879 -2.4067 40 1 0.6205 1.8446 -3.8290 41 1 -0.2412 2.9634 -5.8399 42 1 0.1563 -0.6620 -8.0577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967272381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -42.540424 kcal Electronic energy + Delta-G solvation = -27643.968700 eV Core-core repulsion = 23564.744420 eV Total energy + Delta-G solvation = -4079.224279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.94906 -40.14581 -38.85432 -37.54097 -36.75752 -34.41554 -33.24589 -31.59819 -30.95335 -30.85566 -28.75008 -27.35331 -24.47311 -23.98586 -23.20992 -22.10168 -21.07043 -20.26917 -19.52140 -18.26200 -17.28432 -16.92969 -16.71529 -15.83839 -15.64794 -15.36025 -14.93126 -14.78633 -14.26477 -13.97754 -13.75041 -13.62160 -13.56940 -13.48465 -13.35716 -13.05773 -12.65508 -12.44009 -12.03695 -11.91284 -11.68731 -11.63255 -11.57370 -11.42902 -10.90168 -10.70586 -10.66830 -10.45925 -10.14895 -10.01107 -9.90905 -9.57082 -9.47379 -9.40638 -9.02907 -8.57130 -8.42216 -6.65943 -5.75120 -3.18062 0.29755 0.74015 1.58033 2.67555 3.29434 3.44262 3.52307 3.53384 3.58797 3.93186 4.23785 4.51918 4.54112 4.63530 4.77754 5.04279 5.14055 5.22426 5.37533 5.43780 5.50290 5.57180 5.58780 5.67247 5.70576 5.88126 5.96450 6.00380 6.09094 6.21155 6.29094 6.36416 6.43759 6.49263 6.70137 6.73560 6.87874 6.95243 7.26927 7.71782 7.78527 7.86059 8.47003 8.51749 9.23447 9.87553 10.41771 11.32969 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.003340 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.551811 B = 8380.899643 C = 9813.531775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.291 1.291 15 C 0.166 3.834 16 C 0.124 3.876 17 H 0.084 0.916 18 N -0.710 5.710 19 C 0.550 3.450 20 O -0.511 6.511 21 C -0.157 4.157 22 C -0.047 4.047 23 C -0.130 4.130 24 C 0.010 3.990 25 Cl -0.055 7.055 26 C -0.159 4.159 27 C 0.173 3.827 28 F -0.104 7.104 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.017 0.983 39 H 0.390 0.610 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 10.427 -7.186 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.731 3.269 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.218 1.218 15 C 0.039 3.961 16 C 0.019 3.981 17 H 0.102 0.898 18 N -0.361 5.361 19 C 0.335 3.665 20 O -0.387 6.387 21 C -0.162 4.162 22 C -0.065 4.065 23 C -0.149 4.149 24 C -0.017 4.017 25 Cl -0.026 7.026 26 C -0.179 4.179 27 C 0.152 3.848 28 F -0.082 7.082 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.035 0.965 39 H 0.225 0.775 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.893 9.558 -7.447 19.985 hybrid contribution 0.382 -0.376 -0.464 0.709 sum -15.511 9.182 -7.911 19.685 Atomic orbital electron populations 1.21855 0.95974 1.01653 1.00701 1.21306 0.94570 0.99684 0.95554 0.91453 1.22071 0.98977 1.00084 0.95384 1.20965 0.90792 0.96484 0.90204 1.43964 1.48131 1.39815 0.99138 1.19178 1.09806 1.03178 1.06388 0.91543 1.25024 0.97160 0.97427 0.99625 1.70020 1.37471 1.29057 1.17707 0.86250 0.78866 0.83782 0.78033 1.20188 1.21387 1.21763 1.21105 0.86323 0.97529 0.91164 1.22067 0.98474 0.96451 0.81081 0.89771 1.45943 1.65818 1.13878 1.10436 1.17804 0.79177 0.86739 0.82785 1.90905 1.48384 1.15346 1.84048 1.20425 1.05837 0.95297 0.94613 1.21192 0.94281 0.92293 0.98782 1.21021 1.01912 1.01160 0.90780 1.20781 0.99389 0.92440 0.89089 1.98398 1.85941 1.79364 1.38893 1.20961 1.03688 0.94030 0.99186 1.17466 0.95445 0.79294 0.92582 1.91655 1.88494 1.31469 1.96601 0.92869 0.93056 0.93309 0.92070 0.92562 0.92567 0.96404 0.93702 0.88625 0.96467 0.77514 0.83587 0.83627 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.02 37.16 0.34 -1.44 16 2 C -0.09 -1.40 2.27 -90.58 -0.21 -1.61 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.06 5.36 -26.62 -0.14 -2.20 16 5 C 0.14 2.89 6.52 -3.71 -0.02 2.86 16 6 N -0.59 -14.77 2.99 -172.33 -0.52 -15.29 16 7 C -0.26 -7.18 9.58 -15.06 -0.14 -7.32 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 9 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 10 N -0.90 -26.87 11.19 55.49 0.62 -26.25 16 11 Si 0.90 22.69 29.59 -169.99 -5.03 17.67 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 C 0.17 3.98 4.89 -3.71 -0.02 3.97 16 16 C 0.12 2.34 2.06 -67.81 -0.14 2.20 16 17 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 18 N -0.71 -11.09 4.32 -54.70 -0.24 -11.33 16 19 C 0.55 9.71 7.73 -12.43 -0.10 9.61 16 20 O -0.51 -11.63 15.00 5.30 0.08 -11.55 16 21 C -0.16 -2.16 5.88 -104.91 -0.62 -2.77 16 22 C -0.05 -0.44 9.54 -39.20 -0.37 -0.82 16 23 C -0.13 -1.07 9.81 -39.60 -0.39 -1.46 16 24 C 0.01 0.09 6.32 -39.40 -0.25 -0.15 16 25 Cl -0.06 -0.45 28.95 -51.86 -1.50 -1.95 16 26 C -0.16 -1.69 9.79 -39.53 -0.39 -2.08 16 27 C 0.17 2.40 7.28 -38.96 -0.28 2.12 16 28 F -0.10 -1.77 15.55 2.25 0.04 -1.73 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.10 2.75 6.03 -51.93 -0.31 2.43 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.39 4.56 6.34 -40.82 -0.26 4.31 16 40 H 0.15 0.99 6.40 -52.48 -0.34 0.66 16 41 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -33.51 360.82 -9.38 -42.89 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.45 Total: 1.09 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.82 Total: 1.02 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.13 Total: -52.86 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.67 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.51 -9.38 -42.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967272381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.346 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds