Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.45965 * 2 1 4 4 C 1.53043 * 109.46033 * 240.03825 * 2 1 3 5 5 C 1.53193 * 109.30955 * 178.61284 * 4 2 1 6 6 N 1.46928 * 108.77570 * 54.63806 * 5 4 2 7 7 C 1.36930 * 120.63170 * 126.40960 * 6 5 4 8 8 H 1.08003 * 120.00201 * 331.80677 * 7 6 5 9 9 C 1.38823 * 120.00179 * 151.80992 * 7 6 5 10 10 N 1.31615 * 119.99516 * 343.08261 * 9 7 6 11 11 Si 1.86791 * 120.00135 * 163.08641 * 9 7 6 12 12 H 1.48502 * 109.47511 * 59.99951 * 11 9 7 13 13 H 1.48504 * 109.47018 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47277 * 299.99840 * 11 9 7 15 15 C 1.46936 * 118.73714 * 306.39006 * 6 5 4 16 16 C 1.53038 * 109.45646 * 119.97175 * 2 1 3 17 17 H 1.08999 * 109.50032 * 61.40676 * 16 2 1 18 18 N 1.46500 * 109.50022 * 301.33614 * 16 2 1 19 19 C 1.34773 * 120.00251 * 155.00275 * 18 16 2 20 20 O 1.21570 * 119.99919 * 359.97438 * 19 18 16 21 21 C 1.47635 * 120.00107 * 180.02562 * 19 18 16 22 22 C 1.39705 * 120.15212 * 359.71676 * 21 19 18 23 23 C 1.37789 * 119.88637 * 179.79347 * 22 21 19 24 24 C 1.38612 * 120.21135 * 0.48749 * 23 22 21 25 25 Cl 1.73600 * 119.84551 * 179.76389 * 24 23 22 26 26 C 1.38354 * 120.30689 * 359.75088 * 24 23 22 27 27 C 1.38255 * 120.10534 * 0.02562 * 26 24 23 28 28 F 1.35107 * 120.10102 * 179.97438 * 27 26 24 29 29 H 1.08992 * 109.47959 * 300.03088 * 1 2 3 30 30 H 1.09006 * 109.47266 * 60.03399 * 1 2 3 31 31 H 1.09006 * 109.47239 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.49732 * 298.56256 * 4 2 1 33 33 H 1.08994 * 109.49551 * 58.66524 * 4 2 1 34 34 H 1.09001 * 109.58810 * 294.84976 * 5 4 2 35 35 H 1.09006 * 109.70381 * 174.49056 * 5 4 2 36 36 H 0.96996 * 119.99964 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.58289 * 293.81977 * 15 6 5 38 38 H 1.09003 * 109.58271 * 173.39637 * 15 6 5 39 39 H 0.97005 * 119.99416 * 335.00396 * 18 16 2 40 40 H 1.07999 * 120.05143 * 0.02994 * 22 21 19 41 41 H 1.08005 * 119.89240 * 180.25613 * 23 22 21 42 42 H 1.07995 * 119.94611 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5714 -0.6884 -1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9764 -2.2733 -0.0001 8 1 5.0042 -2.9704 -0.8246 9 6 5.8617 -2.4161 1.0596 10 7 6.0661 -1.4123 1.8860 11 14 6.7627 -4.0326 1.3126 12 1 7.5865 -4.3330 0.1141 13 1 7.6430 -3.9274 2.5039 14 1 5.7756 -5.1223 1.5206 15 6 3.5713 -0.6886 1.2643 16 6 2.0397 -0.7209 1.2500 17 1 1.6973 -1.7556 1.2384 18 7 1.5255 -0.0489 2.4460 19 6 1.3970 -0.7326 3.6003 20 8 1.7074 -1.9069 3.6491 21 6 0.8782 -0.0555 4.8053 22 6 0.5250 1.2952 4.7542 23 6 0.0374 1.9205 5.8810 24 6 -0.0944 1.2163 7.0677 25 17 -0.7040 2.0152 8.4832 26 6 0.2575 -0.1203 7.1291 27 6 0.7438 -0.7618 6.0050 28 9 1.0879 -2.0669 6.0652 29 1 -0.3635 0.5142 0.8896 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 1.6979 -1.7555 -1.2384 33 1 1.6572 -0.2205 -2.1398 34 1 3.9143 0.3411 -1.3672 35 1 3.9438 -1.2828 -2.0986 36 1 6.6843 -1.5121 2.6267 37 1 3.9142 0.3409 1.3675 38 1 3.9416 -1.2847 2.0984 39 1 1.2774 0.8880 2.4069 40 1 0.6305 1.8472 3.8319 41 1 -0.2396 2.9637 5.8405 42 1 0.1520 -0.6635 8.0565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967272383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = -42.580753 kcal Electronic energy + Delta-G solvation = -27640.231425 eV Core-core repulsion = 23561.005397 eV Total energy + Delta-G solvation = -4079.226028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.94876 -40.14599 -38.85384 -37.53968 -36.75793 -34.41208 -33.24377 -31.59696 -30.95301 -30.85638 -28.74851 -27.34933 -24.47114 -23.98120 -23.20982 -22.09997 -21.06632 -20.26876 -19.52118 -18.26201 -17.28422 -16.92817 -16.71273 -15.83869 -15.64764 -15.35816 -14.92931 -14.78556 -14.26541 -13.97960 -13.75035 -13.62219 -13.57083 -13.48180 -13.35681 -13.05375 -12.65467 -12.43264 -12.03356 -11.91211 -11.68415 -11.63144 -11.57511 -11.42919 -10.89272 -10.69278 -10.65645 -10.46949 -10.18186 -10.01396 -9.91103 -9.57419 -9.46998 -9.40623 -9.02985 -8.57125 -8.41347 -6.65088 -5.74761 -3.18318 0.29749 0.74020 1.58017 2.67566 3.29516 3.44811 3.50810 3.53256 3.58771 3.93157 4.23813 4.51943 4.54338 4.63564 4.77732 5.04313 5.14256 5.22645 5.37760 5.43836 5.50506 5.57208 5.58959 5.67266 5.70612 5.88327 5.96665 6.00603 6.09296 6.21355 6.29098 6.36610 6.43991 6.49477 6.70363 6.73909 6.88053 6.95633 7.27082 7.71616 7.78500 7.85811 8.47428 8.51949 9.23777 9.87693 10.42370 11.33310 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.003335 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.286662 B = 8393.519830 C = 9823.203350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.258 4.258 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.899 5.899 11 Si 0.902 3.098 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.166 3.834 16 C 0.124 3.876 17 H 0.084 0.916 18 N -0.710 5.710 19 C 0.550 3.450 20 O -0.511 6.511 21 C -0.157 4.157 22 C -0.046 4.046 23 C -0.130 4.130 24 C 0.010 3.990 25 Cl -0.055 7.055 26 C -0.159 4.159 27 C 0.173 3.827 28 F -0.104 7.104 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.018 0.982 35 H 0.056 0.944 36 H 0.254 0.746 37 H 0.017 0.983 38 H 0.095 0.905 39 H 0.390 0.610 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 10.414 7.246 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.388 4.388 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.543 5.543 11 Si 0.732 3.268 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.208 1.208 15 C 0.039 3.961 16 C 0.019 3.981 17 H 0.102 0.898 18 N -0.361 5.361 19 C 0.335 3.665 20 O -0.387 6.387 21 C -0.162 4.162 22 C -0.065 4.065 23 C -0.149 4.149 24 C -0.017 4.017 25 Cl -0.026 7.026 26 C -0.179 4.179 27 C 0.152 3.848 28 F -0.082 7.082 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.113 0.887 39 H 0.225 0.775 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.846 9.554 7.516 19.972 hybrid contribution 0.384 -0.385 0.444 0.702 sum -15.462 9.169 7.960 19.660 Atomic orbital electron populations 1.21857 0.95980 1.01651 1.00699 1.21308 0.94567 0.99682 0.95556 0.91447 1.22069 0.98976 1.00076 0.95383 1.20967 0.90777 0.96491 0.90212 1.43940 1.48080 1.39858 0.99118 1.19094 1.09580 1.03176 1.06914 0.91660 1.25036 0.97090 0.97379 0.99634 1.69991 1.37259 1.29079 1.17936 0.86374 0.79228 0.83960 0.77238 1.20912 1.21610 1.20827 1.21101 0.86307 0.97513 0.91142 1.22071 0.98481 0.96454 0.81080 0.89765 1.45945 1.65822 1.13845 1.10459 1.17803 0.79172 0.86741 0.82787 1.90902 1.48422 1.15330 1.84037 1.20425 1.05863 0.95267 0.94618 1.21192 0.94290 0.92285 0.98775 1.21020 1.01865 1.01155 0.90832 1.20780 0.99344 0.92464 0.89117 1.98398 1.85722 1.79447 1.39026 1.20961 1.03653 0.94059 0.99189 1.17462 0.95475 0.79284 0.92567 1.91656 1.88540 1.31427 1.96601 0.93311 0.93059 0.92872 0.92064 0.92563 0.96432 0.92574 0.93589 0.96453 0.88702 0.77515 0.83584 0.83629 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.02 37.16 0.34 -1.44 16 2 C -0.09 -1.41 2.27 -90.58 -0.21 -1.61 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.13 -2.06 5.36 -26.61 -0.14 -2.20 16 5 C 0.14 2.89 6.52 -3.71 -0.02 2.87 16 6 N -0.59 -14.77 2.99 -172.30 -0.52 -15.29 16 7 C -0.26 -7.24 9.58 -15.06 -0.14 -7.39 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 9 C 0.01 0.23 4.92 -17.43 -0.09 0.14 16 10 N -0.90 -26.86 11.20 55.49 0.62 -26.24 16 11 Si 0.90 22.70 29.59 -169.99 -5.03 17.67 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 15 C 0.17 4.00 4.88 -3.70 -0.02 3.98 16 16 C 0.12 2.34 2.07 -67.81 -0.14 2.20 16 17 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 18 N -0.71 -11.09 4.32 -54.70 -0.24 -11.33 16 19 C 0.55 9.70 7.73 -12.43 -0.10 9.60 16 20 O -0.51 -11.62 15.00 5.30 0.08 -11.54 16 21 C -0.16 -2.15 5.88 -104.91 -0.62 -2.77 16 22 C -0.05 -0.44 9.54 -39.20 -0.37 -0.82 16 23 C -0.13 -1.07 9.81 -39.61 -0.39 -1.46 16 24 C 0.01 0.09 6.32 -39.40 -0.25 -0.16 16 25 Cl -0.06 -0.45 28.95 -51.86 -1.50 -1.95 16 26 C -0.16 -1.69 9.79 -39.53 -0.39 -2.08 16 27 C 0.17 2.40 7.28 -38.97 -0.28 2.12 16 28 F -0.10 -1.76 15.55 2.25 0.04 -1.73 16 29 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 36 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 2.72 6.06 -51.93 -0.31 2.41 16 39 H 0.39 4.56 6.34 -40.82 -0.26 4.31 16 40 H 0.15 0.99 6.40 -52.49 -0.34 0.66 16 41 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -33.44 360.85 -9.38 -42.82 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.45 Total: 1.15 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.82 Total: 0.99 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.13 Total: -52.86 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.44 -9.38 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967272383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.240 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds