Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.45181 * 2 1 4 4 C 1.53038 * 109.46251 * 240.02991 * 2 1 3 5 5 C 1.53194 * 109.31614 * 178.61664 * 4 2 1 6 6 N 1.46919 * 108.77678 * 54.63283 * 5 4 2 7 7 C 1.36939 * 120.63217 * 126.36771 * 6 5 4 8 8 H 1.07996 * 119.99905 * 331.94182 * 7 6 5 9 9 C 1.38808 * 119.99773 * 152.21124 * 7 6 5 10 10 N 1.31616 * 120.00492 * 342.81736 * 9 7 6 11 11 Si 1.86802 * 119.99784 * 162.81823 * 9 7 6 12 12 H 1.48503 * 109.47256 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47450 * 119.99847 * 11 9 7 14 14 H 1.48501 * 109.47146 * 240.00062 * 11 9 7 15 15 C 1.46934 * 118.73899 * 306.64774 * 6 5 4 16 16 C 1.52760 * 109.00615 * 53.30702 * 15 6 5 17 17 H 1.09007 * 109.58635 * 185.53447 * 16 15 6 18 18 N 1.46497 * 109.35963 * 65.50297 * 16 15 6 19 19 C 1.34776 * 120.00611 * 85.15832 * 18 16 15 20 20 O 1.21588 * 119.99616 * 359.97438 * 19 18 16 21 21 C 1.47624 * 120.00322 * 179.97438 * 19 18 16 22 22 C 1.39692 * 120.15446 * 359.97438 * 21 19 18 23 23 C 1.37800 * 119.89081 * 179.97438 * 22 21 19 24 24 C 1.38606 * 120.20652 * 0.02562 * 23 22 21 25 25 Cl 1.73602 * 119.84754 * 179.97438 * 24 23 22 26 26 C 1.38351 * 120.31138 * 359.97438 * 24 23 22 27 27 C 1.38257 * 120.10628 * 359.70114 * 26 24 23 28 28 F 1.35100 * 120.10901 * 180.29304 * 27 26 24 29 29 H 1.09001 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47024 * 299.96821 * 1 2 3 31 31 H 1.08998 * 109.47051 * 59.96634 * 1 2 3 32 32 H 1.09001 * 109.49788 * 58.66152 * 4 2 1 33 33 H 1.09003 * 109.49746 * 298.56852 * 4 2 1 34 34 H 1.09007 * 109.58508 * 294.84892 * 5 4 2 35 35 H 1.08996 * 109.58682 * 174.42748 * 5 4 2 36 36 H 0.97003 * 120.00467 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.58525 * 173.14197 * 15 6 5 38 38 H 1.09002 * 109.58280 * 293.56809 * 15 6 5 39 39 H 0.97002 * 119.99956 * 265.15494 * 18 16 15 40 40 H 1.07998 * 120.05832 * 359.97438 * 22 21 19 41 41 H 1.08001 * 119.89621 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.94880 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6887 -1.2642 6 7 4.0679 -1.2488 0.0001 7 6 4.9757 -2.2740 0.0002 8 1 5.0042 -2.9701 -0.8250 9 6 5.8555 -2.4218 1.0636 10 7 6.0606 -1.4200 1.8922 11 14 6.7486 -4.0425 1.3186 12 1 6.3465 -5.0015 0.2584 13 1 8.2147 -3.8159 1.2515 14 1 6.3941 -4.5991 2.6490 15 6 3.5671 -0.6922 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6567 -0.2209 2.1399 18 7 1.5802 -2.1116 1.2344 19 6 1.4515 -2.7920 2.3907 20 8 1.7175 -2.2515 3.4469 21 6 0.9878 -4.1934 2.3749 22 6 0.6808 -4.8173 1.1633 23 6 0.2489 -6.1258 1.1548 24 6 0.1175 -6.8246 2.3446 25 17 -0.4280 -8.4725 2.3231 26 6 0.4192 -6.2150 3.5494 27 6 0.8601 -4.9048 3.5724 28 9 1.1603 -4.3113 4.7483 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6572 -0.2209 -2.1398 33 1 1.6978 -1.7557 -1.2382 34 1 3.9144 0.3409 -1.3673 35 1 3.9417 -1.2846 -2.0983 36 1 6.6752 -1.5233 2.6356 37 1 3.9346 -1.2906 2.0980 38 1 3.9097 0.3370 1.3715 39 1 1.3683 -2.5429 0.3918 40 1 0.7818 -4.2751 0.2348 41 1 0.0111 -6.6082 0.2182 42 1 0.3144 -6.7648 4.4730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967272384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -60.235742 kcal Electronic energy + Delta-G solvation = -28379.616456 eV Core-core repulsion = 24299.624850 eV Total energy + Delta-G solvation = -4079.991606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.07267 -41.43010 -40.01007 -38.90329 -37.53993 -35.94998 -34.47741 -32.91925 -32.43278 -31.74663 -30.52931 -28.90719 -25.99377 -25.24947 -24.18087 -23.51898 -22.74746 -21.92971 -20.33584 -19.43229 -18.71184 -18.35694 -17.76874 -17.00188 -16.88582 -16.54233 -16.46149 -15.95194 -15.76024 -15.63745 -15.16955 -14.83499 -14.74969 -14.62911 -14.58631 -14.27145 -14.10102 -13.60545 -13.53543 -13.16733 -12.98206 -12.79717 -12.71394 -12.63938 -12.49696 -12.40305 -12.19371 -12.11907 -11.93293 -11.54843 -11.31292 -11.05887 -10.99167 -10.55273 -10.25457 -10.07102 -9.81494 -8.64406 -7.86553 -5.31025 -0.61115 -0.08125 0.82424 1.38151 1.41866 1.49836 1.65188 2.14932 2.47602 2.51873 3.02306 3.30262 3.45256 3.58922 3.69422 3.80229 3.89227 3.93148 4.00683 4.14151 4.27078 4.53473 4.58269 4.68822 4.73198 4.78649 4.83968 4.87875 4.89858 4.94202 4.98632 5.10744 5.19875 5.26801 5.28149 5.43501 5.48613 5.52672 5.61068 5.69631 5.71893 6.39304 6.58195 7.14475 7.26064 7.88432 8.39091 9.18702 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.004563 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.534883 B = 6134.740886 C = 7299.730742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.244 4.244 8 H 0.075 0.925 9 C -0.052 4.052 10 N -0.935 5.935 11 Si 0.947 3.053 12 H -0.253 1.253 13 H -0.293 1.293 14 H -0.307 1.307 15 C 0.171 3.829 16 C 0.137 3.863 17 H 0.062 0.938 18 N -0.676 5.676 19 C 0.546 3.454 20 O -0.581 6.581 21 C -0.180 4.180 22 C -0.034 4.034 23 C -0.112 4.112 24 C 0.014 3.986 25 Cl -0.036 7.036 26 C -0.154 4.154 27 C 0.139 3.861 28 F -0.133 7.133 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.011 0.989 35 H 0.061 0.939 36 H 0.243 0.757 37 H 0.045 0.955 38 H -0.004 1.004 39 H 0.408 0.592 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.492 -9.254 -6.914 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.374 4.374 8 H 0.093 0.907 9 C -0.247 4.247 10 N -0.582 5.582 11 Si 0.776 3.224 12 H -0.176 1.176 13 H -0.220 1.220 14 H -0.235 1.235 15 C 0.044 3.956 16 C 0.031 3.969 17 H 0.080 0.920 18 N -0.327 5.327 19 C 0.333 3.667 20 O -0.462 6.462 21 C -0.184 4.184 22 C -0.053 4.053 23 C -0.131 4.131 24 C -0.014 4.014 25 Cl -0.007 7.007 26 C -0.174 4.174 27 C 0.118 3.882 28 F -0.111 7.111 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.029 0.971 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.014 0.986 39 H 0.247 0.753 40 H 0.188 0.812 41 H 0.201 0.799 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.226 -8.968 -6.072 21.201 hybrid contribution 1.341 -0.509 1.054 1.780 sum -16.885 -9.477 -5.018 20.003 Atomic orbital electron populations 1.21772 0.92908 1.02357 1.02266 1.21284 0.96975 0.99142 0.93240 0.90601 1.21975 0.95447 1.00654 0.97371 1.21176 0.93831 0.95922 0.88081 1.44180 1.47950 1.39596 1.00589 1.19484 1.08931 1.03307 1.05710 0.90689 1.25698 0.98927 0.99602 1.00466 1.70174 1.38726 1.30872 1.18403 0.85495 0.78088 0.81456 0.77326 1.17645 1.22024 1.23504 1.20765 0.90091 0.95022 0.89769 1.21450 0.95208 0.81339 0.98921 0.92006 1.45549 1.65559 1.13569 1.08034 1.18361 0.77771 0.86230 0.84340 1.90801 1.52403 1.70674 1.32371 1.20300 1.08291 0.94966 0.94859 1.21454 0.92903 0.94680 0.96277 1.21424 0.99691 0.93374 0.98586 1.20928 0.98761 0.87599 0.94086 1.98408 1.87510 1.15940 1.98835 1.21063 1.03365 0.92519 1.00425 1.17854 0.98052 0.91612 0.80641 1.91558 1.90223 1.84070 1.45252 0.92165 0.93466 0.90317 0.88790 0.91476 0.97066 0.92077 0.94805 0.93642 0.98649 0.75308 0.81207 0.79864 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.05 71.98 0.65 -2.13 16 2 C -0.09 -2.40 2.48 -10.77 -0.03 -2.43 16 3 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 4 C -0.12 -2.96 5.20 30.67 0.16 -2.80 16 5 C 0.13 4.89 6.52 86.36 0.56 5.45 16 6 N -0.60 -28.35 2.92 -699.92 -2.04 -30.39 16 7 C -0.24 -12.91 9.58 84.03 0.81 -12.10 16 8 H 0.08 3.76 7.88 -2.91 -0.02 3.74 16 9 C -0.05 -2.95 4.91 84.86 0.42 -2.54 16 10 N -0.94 -58.25 11.20 21.65 0.24 -58.00 16 11 Si 0.95 46.32 29.59 68.60 2.03 48.35 16 12 H -0.25 -11.20 7.11 99.48 0.71 -10.50 16 13 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 14 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 15 C 0.17 8.42 4.87 86.22 0.42 8.84 16 16 C 0.14 5.13 2.24 44.93 0.10 5.23 16 17 H 0.06 2.52 7.58 -2.38 -0.02 2.50 16 18 N -0.68 -22.91 4.20 -445.93 -1.87 -24.78 16 19 C 0.55 21.37 7.73 86.72 0.67 22.04 16 20 O -0.58 -28.66 15.00 -3.99 -0.06 -28.72 16 21 C -0.18 -5.59 5.88 -20.05 -0.12 -5.71 16 22 C -0.03 -0.72 9.54 22.52 0.21 -0.50 16 23 C -0.11 -1.83 9.81 22.25 0.22 -1.62 16 24 C 0.01 0.25 6.32 22.38 0.14 0.40 16 25 Cl -0.04 -0.56 28.95 -2.72 -0.08 -0.64 16 26 C -0.15 -3.56 9.79 22.30 0.22 -3.34 16 27 C 0.14 4.38 7.28 22.67 0.17 4.54 16 28 F -0.13 -5.10 15.55 44.97 0.70 -4.40 16 29 H 0.06 1.13 7.55 -2.39 -0.02 1.11 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.56 6.40 -2.39 -0.02 1.55 16 34 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 36 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.05 2.73 6.06 -2.38 -0.01 2.72 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.41 11.00 4.67 -92.71 -0.43 10.57 16 40 H 0.17 2.61 6.40 -2.91 -0.02 2.59 16 41 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -76.44 357.66 4.15 -72.30 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.63 Total: 12.96 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 4.60 Total: 13.34 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -3.67 Total: -113.18 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.06 Total: -28.72 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.70 Total: -4.40 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -76.44 4.15 -72.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967272384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.063 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds