Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45041 * 2 1 4 4 C 1.53034 * 109.46334 * 119.96878 * 2 1 3 5 5 C 1.53189 * 109.31409 * 181.38700 * 4 2 1 6 6 N 1.46925 * 108.77782 * 305.36092 * 5 4 2 7 7 C 1.36933 * 120.63486 * 233.63462 * 6 5 4 8 8 H 1.08000 * 119.99953 * 152.61972 * 7 6 5 9 9 C 1.38809 * 120.00014 * 332.61611 * 7 6 5 10 10 N 1.31617 * 120.00421 * 159.34362 * 9 7 6 11 11 Si 1.86804 * 119.99978 * 339.35055 * 9 7 6 12 12 H 1.48497 * 109.47380 * 92.95975 * 11 9 7 13 13 H 1.48499 * 109.47041 * 212.96217 * 11 9 7 14 14 H 1.48504 * 109.46977 * 332.95790 * 11 9 7 15 15 C 1.46936 * 118.73570 * 53.60775 * 6 5 4 16 16 C 1.53042 * 109.45714 * 240.03648 * 2 1 3 17 17 H 1.08997 * 109.50126 * 298.59239 * 16 2 1 18 18 N 1.46499 * 109.50158 * 58.66210 * 16 2 1 19 19 C 1.34766 * 120.00441 * 204.99975 * 18 16 2 20 20 O 1.21581 * 119.99858 * 359.97438 * 19 18 16 21 21 C 1.47694 * 120.00311 * 179.97438 * 19 18 16 22 22 C 1.39670 * 120.16054 * 359.97438 * 21 19 18 23 23 C 1.37854 * 119.90275 * 180.02562 * 22 21 19 24 24 C 1.38451 * 120.22808 * 0.03009 * 23 22 21 25 25 C 1.38294 * 120.33038 * 359.66731 * 24 23 22 26 26 Cl 1.73600 * 119.95929 * 180.33042 * 25 24 23 27 27 C 1.38443 * 120.08998 * 0.61129 * 25 24 23 28 28 F 1.35095 * 120.11531 * 179.69770 * 27 25 24 29 29 H 1.09008 * 109.47176 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47363 * 299.96120 * 1 2 3 31 31 H 1.09000 * 109.47317 * 59.96688 * 1 2 3 32 32 H 1.09003 * 109.49653 * 301.33818 * 4 2 1 33 33 H 1.09004 * 109.49943 * 61.43151 * 4 2 1 34 34 H 1.08997 * 109.58952 * 65.15158 * 5 4 2 35 35 H 1.08999 * 109.58978 * 185.43393 * 5 4 2 36 36 H 0.96995 * 120.00342 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.58812 * 186.60825 * 15 6 5 38 38 H 1.08997 * 109.58221 * 66.17985 * 15 6 5 39 39 H 0.97006 * 119.99467 * 24.99408 * 18 16 2 40 40 H 1.08001 * 120.04821 * 0.02562 * 22 21 19 41 41 H 1.07995 * 119.88421 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.83147 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6885 1.2641 6 7 4.0679 -1.2488 -0.0001 7 6 4.9757 -2.2739 -0.0002 8 1 5.0119 -2.9632 -0.8308 9 6 5.8497 -2.4271 1.0673 10 7 6.4255 -3.5905 1.2847 11 14 6.2083 -0.9822 2.1956 12 1 5.2799 -1.0162 3.3540 13 1 7.6090 -1.0690 2.6811 14 1 6.0213 0.2876 1.4485 15 6 3.5713 -0.6885 -1.2644 16 6 2.0397 -0.7207 -1.2502 17 1 1.6973 -1.7554 -1.2387 18 7 1.5255 -0.0487 -2.4460 19 6 1.3969 -0.7321 -3.6004 20 8 1.7083 -1.9063 -3.6495 21 6 0.8779 -0.0547 -4.8058 22 6 0.5188 1.2940 -4.7531 23 6 0.0344 1.9209 -5.8813 24 6 -0.0979 1.2179 -7.0667 25 6 0.2607 -0.1161 -7.1313 26 17 0.0988 -0.9860 -8.6249 27 6 0.7432 -0.7605 -6.0050 28 9 1.0879 -2.0653 -6.0660 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5132 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 1.6572 -0.2208 2.1398 33 1 1.6978 -1.7557 1.2382 34 1 3.9143 0.3409 1.3673 35 1 3.9417 -1.2824 2.0997 36 1 7.0359 -3.6976 2.0309 37 1 3.9416 -1.2844 -2.0986 38 1 3.9142 0.3410 -1.3674 39 1 1.2773 0.8883 -2.4068 40 1 0.6204 1.8450 -3.8297 41 1 -0.2436 2.9636 -5.8400 42 1 -0.4785 1.7153 -7.9466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968158364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -34.692136 kcal Electronic energy + Delta-G solvation = -27483.056478 eV Core-core repulsion = 23404.172526 eV Total energy + Delta-G solvation = -4078.883952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.09295 -40.37330 -39.04286 -37.80212 -36.86773 -34.74173 -33.27940 -31.76125 -31.40899 -30.88916 -29.26536 -27.65943 -24.84294 -23.84642 -23.22921 -22.50159 -21.32978 -20.55799 -19.83862 -18.42916 -17.37707 -17.09490 -16.74300 -16.09096 -15.86743 -15.61260 -15.13903 -15.07127 -14.83784 -14.12919 -13.95537 -13.80625 -13.59938 -13.51916 -13.31067 -13.27600 -12.76377 -12.65935 -12.22517 -12.17107 -12.02046 -11.92359 -11.70148 -11.44033 -11.32773 -10.98410 -10.91415 -10.69189 -10.15598 -10.01990 -9.86056 -9.70491 -9.50013 -9.44780 -9.15386 -9.04413 -8.53240 -6.97615 -5.91702 -3.28689 0.21235 0.51487 1.55688 2.52141 3.04253 3.31501 3.35209 3.48340 3.50955 3.65391 4.20394 4.24885 4.43823 4.54090 4.61398 4.87392 4.95172 5.03271 5.10190 5.19768 5.33307 5.37321 5.43446 5.51240 5.66485 5.70129 5.77294 5.78999 5.89200 5.98986 6.07726 6.11150 6.22151 6.31816 6.45061 6.45551 6.58078 6.63518 6.73744 6.91624 7.51264 7.97719 8.22762 8.37079 8.96391 9.73861 10.08941 11.24241 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.002863 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.975119 B = 9777.777514 C =10607.348159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.122 3.878 6 N -0.600 5.600 7 C -0.259 4.259 8 H 0.087 0.913 9 C 0.024 3.976 10 N -0.907 5.907 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.144 3.856 16 C 0.132 3.868 17 H 0.094 0.906 18 N -0.713 5.713 19 C 0.552 3.448 20 O -0.510 6.510 21 C -0.155 4.155 22 C -0.055 4.055 23 C -0.127 4.127 24 C -0.061 4.061 25 C -0.088 4.088 26 Cl -0.044 7.044 27 C 0.169 3.831 28 F -0.098 7.098 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.393 0.607 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.754 15.712 -14.009 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.387 4.387 8 H 0.105 0.895 9 C -0.175 4.175 10 N -0.550 5.550 11 Si 0.714 3.286 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.196 1.196 15 C 0.016 3.984 16 C 0.027 3.973 17 H 0.112 0.888 18 N -0.364 5.364 19 C 0.337 3.663 20 O -0.386 6.386 21 C -0.159 4.159 22 C -0.074 4.074 23 C -0.145 4.145 24 C -0.080 4.080 25 C -0.115 4.115 26 Cl -0.015 7.015 27 C 0.148 3.852 28 F -0.076 7.076 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.228 0.772 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.365 14.576 -14.071 26.683 hybrid contribution 0.216 0.967 0.544 1.131 sum -17.149 15.543 -13.527 26.808 Atomic orbital electron populations 1.21847 0.95467 1.01976 1.00902 1.21306 0.95083 0.99577 0.95115 0.91279 1.22076 0.98319 1.00738 0.95482 1.21404 0.91708 0.96984 0.90294 1.44279 1.48653 1.40476 0.98993 1.18956 1.09617 1.02617 1.07553 0.89542 1.25265 0.97430 0.96666 0.98140 1.69842 1.32597 1.21958 1.30584 0.86950 0.76301 0.84849 0.80547 1.21618 1.23182 1.19643 1.21224 0.90196 0.96842 0.90096 1.21802 0.96476 0.97457 0.81602 0.88844 1.45940 1.66127 1.14090 1.10262 1.17823 0.79058 0.86657 0.82748 1.90923 1.48355 1.15185 1.84089 1.20189 1.06593 0.95276 0.93851 1.21361 0.94352 0.92185 0.99480 1.21119 1.00727 1.00953 0.91717 1.21165 0.96418 0.90971 0.99452 1.20955 1.07944 0.94508 0.88121 1.98405 1.96362 1.76174 1.30521 1.17419 0.96210 0.79575 0.92020 1.91666 1.88349 1.31090 1.96514 0.92593 0.92770 0.93229 0.92154 0.91304 0.95661 0.90695 0.92763 0.91315 0.95944 0.77173 0.83957 0.83662 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.02 37.16 0.34 -1.28 16 2 C -0.09 -1.28 2.27 -90.58 -0.21 -1.48 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -2.10 5.36 -26.62 -0.14 -2.25 16 5 C 0.12 2.58 4.20 -3.71 -0.02 2.56 16 6 N -0.60 -14.39 2.77 -172.32 -0.48 -14.86 16 7 C -0.26 -7.44 10.04 -15.06 -0.15 -7.59 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 10 N -0.91 -28.30 13.97 55.49 0.78 -27.52 16 11 Si 0.88 22.37 24.35 -169.99 -4.14 18.23 16 12 H -0.29 -6.98 6.62 56.52 0.37 -6.60 16 13 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 14 H -0.27 -6.70 6.64 56.52 0.38 -6.33 16 15 C 0.14 2.91 6.09 -3.70 -0.02 2.89 16 16 C 0.13 2.16 2.07 -67.81 -0.14 2.02 16 17 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 18 N -0.71 -9.15 4.32 -54.68 -0.24 -9.39 16 19 C 0.55 8.28 7.74 -12.40 -0.10 8.19 16 20 O -0.51 -10.23 15.00 5.29 0.08 -10.15 16 21 C -0.15 -1.79 5.88 -104.92 -0.62 -2.41 16 22 C -0.05 -0.40 9.54 -39.19 -0.37 -0.77 16 23 C -0.13 -0.69 10.03 -39.64 -0.40 -1.09 16 24 C -0.06 -0.40 9.82 -39.48 -0.39 -0.79 16 25 C -0.09 -0.86 6.32 -39.49 -0.25 -1.11 16 26 Cl -0.04 -0.42 28.61 -51.86 -1.48 -1.91 16 27 C 0.17 2.14 7.26 -38.92 -0.28 1.85 16 28 F -0.10 -1.56 15.12 2.25 0.03 -1.53 16 29 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.46 7.36 -51.93 -0.38 0.08 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.52 7.08 -51.93 -0.37 0.16 16 35 H 0.08 1.76 4.50 -51.93 -0.23 1.53 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.39 3.53 6.34 -40.82 -0.26 3.27 16 40 H 0.14 0.63 6.40 -52.49 -0.34 0.30 16 41 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 42 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -34.76 353.86 -8.33 -43.08 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.38 Total: -0.65 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.84 Total: -0.64 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.06 Total: -51.77 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.53 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.76 -8.33 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968158364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.393 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds