Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45041 * 2 1 4 4 C 1.53034 * 109.46334 * 119.96878 * 2 1 3 5 5 C 1.53189 * 109.31409 * 181.38700 * 4 2 1 6 6 N 1.46925 * 108.77782 * 305.36092 * 5 4 2 7 7 C 1.36933 * 120.63486 * 233.63462 * 6 5 4 8 8 H 1.08000 * 119.99953 * 152.61972 * 7 6 5 9 9 C 1.38809 * 120.00014 * 332.61611 * 7 6 5 10 10 N 1.31617 * 120.00421 * 159.34362 * 9 7 6 11 11 Si 1.86804 * 119.99978 * 339.35055 * 9 7 6 12 12 H 1.48497 * 109.47380 * 92.95975 * 11 9 7 13 13 H 1.48499 * 109.47041 * 212.96217 * 11 9 7 14 14 H 1.48504 * 109.46977 * 332.95790 * 11 9 7 15 15 C 1.46936 * 118.73570 * 53.60775 * 6 5 4 16 16 C 1.53042 * 109.45714 * 240.03648 * 2 1 3 17 17 H 1.08997 * 109.50126 * 298.59239 * 16 2 1 18 18 N 1.46499 * 109.50158 * 58.66210 * 16 2 1 19 19 C 1.34766 * 120.00441 * 204.99975 * 18 16 2 20 20 O 1.21581 * 119.99858 * 359.97438 * 19 18 16 21 21 C 1.47694 * 120.00311 * 179.97438 * 19 18 16 22 22 C 1.39670 * 120.16054 * 359.97438 * 21 19 18 23 23 C 1.37854 * 119.90275 * 180.02562 * 22 21 19 24 24 C 1.38451 * 120.22808 * 0.03009 * 23 22 21 25 25 C 1.38294 * 120.33038 * 359.66731 * 24 23 22 26 26 Cl 1.73600 * 119.95929 * 180.33042 * 25 24 23 27 27 C 1.38443 * 120.08998 * 0.61129 * 25 24 23 28 28 F 1.35095 * 120.11531 * 179.69770 * 27 25 24 29 29 H 1.09008 * 109.47176 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47363 * 299.96120 * 1 2 3 31 31 H 1.09000 * 109.47317 * 59.96688 * 1 2 3 32 32 H 1.09003 * 109.49653 * 301.33818 * 4 2 1 33 33 H 1.09004 * 109.49943 * 61.43151 * 4 2 1 34 34 H 1.08997 * 109.58952 * 65.15158 * 5 4 2 35 35 H 1.08999 * 109.58978 * 185.43393 * 5 4 2 36 36 H 0.96995 * 120.00342 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.58812 * 186.60825 * 15 6 5 38 38 H 1.08997 * 109.58221 * 66.17985 * 15 6 5 39 39 H 0.97006 * 119.99467 * 24.99408 * 18 16 2 40 40 H 1.08001 * 120.04821 * 0.02562 * 22 21 19 41 41 H 1.07995 * 119.88421 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.83147 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6885 1.2641 6 7 4.0679 -1.2488 -0.0001 7 6 4.9757 -2.2739 -0.0002 8 1 5.0119 -2.9632 -0.8308 9 6 5.8497 -2.4271 1.0673 10 7 6.4255 -3.5905 1.2847 11 14 6.2083 -0.9822 2.1956 12 1 5.2799 -1.0162 3.3540 13 1 7.6090 -1.0690 2.6811 14 1 6.0213 0.2876 1.4485 15 6 3.5713 -0.6885 -1.2644 16 6 2.0397 -0.7207 -1.2502 17 1 1.6973 -1.7554 -1.2387 18 7 1.5255 -0.0487 -2.4460 19 6 1.3969 -0.7321 -3.6004 20 8 1.7083 -1.9063 -3.6495 21 6 0.8779 -0.0547 -4.8058 22 6 0.5188 1.2940 -4.7531 23 6 0.0344 1.9209 -5.8813 24 6 -0.0979 1.2179 -7.0667 25 6 0.2607 -0.1161 -7.1313 26 17 0.0988 -0.9860 -8.6249 27 6 0.7432 -0.7605 -6.0050 28 9 1.0879 -2.0653 -6.0660 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5132 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 1.6572 -0.2208 2.1398 33 1 1.6978 -1.7557 1.2382 34 1 3.9143 0.3409 1.3673 35 1 3.9417 -1.2824 2.0997 36 1 7.0359 -3.6976 2.0309 37 1 3.9416 -1.2844 -2.0986 38 1 3.9142 0.3410 -1.3674 39 1 1.2773 0.8883 -2.4068 40 1 0.6204 1.8450 -3.8297 41 1 -0.2436 2.9636 -5.8400 42 1 -0.4785 1.7153 -7.9466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968158364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -59.136731 kcal Electronic energy + Delta-G solvation = -27484.116475 eV Core-core repulsion = 23404.172526 eV Total energy + Delta-G solvation = -4079.943949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.08843 -41.46980 -40.01384 -39.10200 -37.60882 -36.34488 -34.69133 -33.42953 -32.63570 -31.55433 -30.61104 -29.18421 -26.05819 -25.33000 -24.19604 -23.53371 -22.93090 -21.72764 -21.20309 -19.35527 -18.83236 -18.23700 -17.92656 -17.26194 -17.07866 -16.77621 -16.60097 -16.23438 -15.68727 -15.59188 -15.26946 -15.21936 -15.10202 -14.61997 -14.46097 -14.39494 -14.08011 -13.78214 -13.60457 -13.40723 -13.28957 -12.72019 -12.70175 -12.65811 -12.56361 -12.49496 -12.21387 -12.18841 -11.79138 -11.60754 -11.42546 -11.28946 -11.09747 -10.78561 -10.34697 -10.08538 -9.85310 -8.94925 -8.19202 -5.53766 -0.50915 -0.15410 0.85101 1.29319 1.41425 1.52187 1.64937 1.94410 2.40242 2.49256 2.90999 3.02815 3.27650 3.46838 3.66279 3.74631 3.79396 3.90938 3.99226 4.09271 4.29033 4.30901 4.40617 4.51815 4.57342 4.72516 4.76247 4.82655 4.84129 4.94095 4.98516 4.99256 5.04393 5.10424 5.13189 5.16309 5.31618 5.41748 5.53263 5.57129 5.82081 6.08429 6.45923 6.87788 7.15751 7.57866 7.94961 9.01446 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.002863 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.975119 B = 9777.777514 C =10607.348159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 H 0.101 0.899 4 C -0.122 4.122 5 C 0.113 3.887 6 N -0.617 5.617 7 C -0.259 4.259 8 H 0.030 0.970 9 C -0.039 4.039 10 N -0.961 5.961 11 Si 0.963 3.037 12 H -0.265 1.265 13 H -0.311 1.311 14 H -0.253 1.253 15 C 0.144 3.856 16 C 0.146 3.854 17 H 0.049 0.951 18 N -0.690 5.690 19 C 0.548 3.452 20 O -0.578 6.578 21 C -0.176 4.176 22 C -0.040 4.040 23 C -0.103 4.103 24 C -0.047 4.047 25 C -0.097 4.097 26 Cl -0.053 7.053 27 C 0.126 3.874 28 F -0.134 7.134 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.263 0.737 37 H 0.025 0.975 38 H 0.049 0.951 39 H 0.419 0.581 40 H 0.179 0.821 41 H 0.197 0.803 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.582 22.264 -13.346 33.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 H 0.120 0.880 4 C -0.161 4.161 5 C -0.011 4.011 6 N -0.342 5.342 7 C -0.388 4.388 8 H 0.048 0.952 9 C -0.233 4.233 10 N -0.607 5.607 11 Si 0.790 3.210 12 H -0.191 1.191 13 H -0.240 1.240 14 H -0.177 1.177 15 C 0.018 3.982 16 C 0.039 3.961 17 H 0.067 0.933 18 N -0.343 5.343 19 C 0.336 3.664 20 O -0.458 6.458 21 C -0.180 4.180 22 C -0.059 4.059 23 C -0.121 4.121 24 C -0.065 4.065 25 C -0.125 4.125 26 Cl -0.024 7.024 27 C 0.105 3.895 28 F -0.112 7.112 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.258 0.742 40 H 0.196 0.804 41 H 0.214 0.786 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -20.261 21.217 -13.420 32.261 hybrid contribution 1.042 -1.073 0.189 1.508 sum -19.218 20.144 -13.230 30.825 Atomic orbital electron populations 1.21799 0.92690 1.01583 1.03425 1.21284 0.97231 1.00017 0.91554 0.88035 1.22014 0.94859 1.00492 0.98745 1.21569 0.94847 0.97015 0.87654 1.44334 1.48371 1.39953 1.01495 1.18753 1.11084 1.03052 1.05952 0.95186 1.26045 0.97264 0.99469 1.00521 1.70010 1.34053 1.24502 1.32132 0.85680 0.75680 0.80852 0.78825 1.19109 1.24024 1.17686 1.21291 0.92922 0.96770 0.87264 1.21323 0.93609 0.96483 0.84647 0.93276 1.45594 1.65114 1.15015 1.08612 1.18477 0.77857 0.86031 0.84063 1.90897 1.51287 1.18381 1.85193 1.20003 1.09056 0.97184 0.91744 1.21805 0.92386 0.89853 1.01815 1.21708 0.97718 1.02744 0.89880 1.21705 0.94201 0.89217 1.01385 1.21154 1.08599 0.95722 0.86993 1.98398 1.96420 1.76845 1.30732 1.17955 0.98799 0.78780 0.93944 1.91567 1.89219 1.33643 1.96798 0.94561 0.90180 0.90752 0.88175 0.93756 0.93349 0.93268 0.92778 0.95672 0.93291 0.74155 0.80355 0.78593 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.02 71.98 0.65 -1.82 16 2 C -0.08 -1.99 2.27 -10.77 -0.02 -2.01 16 3 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.12 -3.74 5.36 30.67 0.16 -3.57 16 5 C 0.11 4.60 4.20 86.36 0.36 4.96 16 6 N -0.62 -30.31 2.77 -699.09 -1.94 -32.25 16 7 C -0.26 -15.87 10.04 84.03 0.84 -15.03 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 9 C -0.04 -2.36 5.23 84.86 0.44 -1.91 16 10 N -0.96 -63.37 13.97 21.65 0.30 -63.06 16 11 Si 0.96 46.86 24.35 68.60 1.67 48.53 16 12 H -0.27 -11.83 6.62 99.48 0.66 -11.17 16 13 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 14 H -0.25 -11.43 6.64 99.48 0.66 -10.77 16 15 C 0.14 5.99 6.09 86.36 0.53 6.51 16 16 C 0.15 4.76 2.07 45.07 0.09 4.86 16 17 H 0.05 2.06 7.58 -2.39 -0.02 2.05 16 18 N -0.69 -16.73 4.32 -445.18 -1.92 -18.65 16 19 C 0.55 16.98 7.74 86.74 0.67 17.65 16 20 O -0.58 -25.60 15.00 -3.97 -0.06 -25.66 16 21 C -0.18 -3.93 5.88 -20.06 -0.12 -4.05 16 22 C -0.04 -0.39 9.54 22.52 0.21 -0.18 16 23 C -0.10 -0.48 10.03 22.23 0.22 -0.26 16 24 C -0.05 -0.41 9.82 22.33 0.22 -0.19 16 25 C -0.10 -1.80 6.32 22.33 0.14 -1.66 16 26 Cl -0.05 -1.03 28.61 -2.72 -0.08 -1.11 16 27 C 0.13 3.31 7.26 22.70 0.16 3.47 16 28 F -0.13 -4.75 15.12 44.97 0.68 -4.07 16 29 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 0.98 7.36 -2.39 -0.02 0.96 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.05 1.77 7.08 -2.39 -0.02 1.76 16 35 H 0.05 2.25 4.50 -2.39 -0.01 2.23 16 36 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 37 H 0.02 1.23 7.93 -2.39 -0.02 1.21 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.42 5.62 6.34 -92.70 -0.59 5.03 16 40 H 0.18 0.36 6.40 -2.91 -0.02 0.35 16 41 H 0.20 -0.87 8.06 -2.91 -0.02 -0.89 16 42 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -89.70 353.86 3.61 -86.09 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 0.38 Total: 3.41 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.57 Total: 6.76 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -3.56 Total: -113.96 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.68 Total: -4.07 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.67 Total: 48.53 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -89.70 3.61 -86.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968158364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.954 kcal (2) G-P(sol) polarization free energy of solvation -89.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds