Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46564 * 2 1 4 4 C 1.53046 * 109.45790 * 119.95325 * 2 1 3 5 5 C 1.53190 * 109.31281 * 181.38303 * 4 2 1 6 6 N 1.46928 * 108.77704 * 305.36707 * 5 4 2 7 7 C 1.36932 * 120.62742 * 233.62919 * 6 5 4 8 8 H 1.08007 * 119.99621 * 152.61036 * 7 6 5 9 9 C 1.38811 * 120.00415 * 332.60771 * 7 6 5 10 10 N 1.31620 * 119.99933 * 159.36253 * 9 7 6 11 11 Si 1.86798 * 120.00113 * 339.35772 * 9 7 6 12 12 H 1.48496 * 109.46899 * 92.90191 * 11 9 7 13 13 H 1.48496 * 109.47202 * 212.90397 * 11 9 7 14 14 H 1.48503 * 109.46761 * 332.90616 * 11 9 7 15 15 C 1.46922 * 118.73740 * 53.61118 * 6 5 4 16 16 C 1.53038 * 109.46214 * 240.01916 * 2 1 3 17 17 H 1.09005 * 109.49605 * 58.66731 * 16 2 1 18 18 N 1.46502 * 109.50251 * 298.60268 * 16 2 1 19 19 C 1.34770 * 120.00317 * 154.99679 * 18 16 2 20 20 O 1.21579 * 119.99785 * 0.02562 * 19 18 16 21 21 C 1.47691 * 120.00340 * 180.02562 * 19 18 16 22 22 C 1.39672 * 120.15618 * 359.97438 * 21 19 18 23 23 C 1.37855 * 119.90056 * 180.02562 * 22 21 19 24 24 C 1.38448 * 120.23231 * 0.02562 * 23 22 21 25 25 C 1.38303 * 120.32507 * 0.02562 * 24 23 22 26 26 Cl 1.73600 * 119.95382 * 179.97438 * 25 24 23 27 27 C 1.38435 * 120.09305 * 359.67404 * 25 24 23 28 28 F 1.35098 * 120.11944 * 180.29954 * 27 25 24 29 29 H 1.08992 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47257 * 299.98213 * 1 2 3 31 31 H 1.09003 * 109.46683 * 59.97662 * 1 2 3 32 32 H 1.08997 * 109.49680 * 301.33981 * 4 2 1 33 33 H 1.09009 * 109.49428 * 61.43429 * 4 2 1 34 34 H 1.09003 * 109.58642 * 185.58109 * 5 4 2 35 35 H 1.09000 * 109.70404 * 65.22646 * 5 4 2 36 36 H 0.97000 * 119.99782 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.58454 * 186.60636 * 15 6 5 38 38 H 1.08993 * 109.58866 * 66.17447 * 15 6 5 39 39 H 0.96998 * 119.99661 * 335.00061 * 18 16 2 40 40 H 1.08000 * 120.05416 * 359.97438 * 22 21 19 41 41 H 1.08007 * 119.88561 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.84202 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7205 1.2503 5 6 3.5713 -0.6884 1.2645 6 7 4.0678 -1.2489 0.0004 7 6 4.9756 -2.2741 0.0007 8 1 5.0116 -2.9637 -0.8298 9 6 5.8496 -2.4270 1.0682 10 7 6.4257 -3.5902 1.2857 11 14 6.2083 -0.9817 2.1960 12 1 5.2790 -1.0148 3.3537 13 1 7.6086 -1.0691 2.6825 14 1 6.0224 0.2877 1.4482 15 6 3.5714 -0.6889 -1.2640 16 6 2.0399 -0.7210 -1.2499 17 1 1.6573 -0.2212 -2.1398 18 7 1.5795 -2.1118 -1.2342 19 6 1.4509 -2.7921 -2.3905 20 8 1.7175 -2.2519 -3.4465 21 6 0.9863 -4.1939 -2.3748 22 6 0.6797 -4.8180 -1.1634 23 6 0.2469 -6.1268 -1.1548 24 6 0.1155 -6.8254 -2.3429 25 6 0.4176 -6.2171 -3.5477 26 17 0.2501 -7.1023 -5.0317 27 6 0.8473 -4.9014 -3.5725 28 9 1.1367 -4.3048 -4.7495 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8901 31 1 -0.3633 0.5142 -0.8898 32 1 1.6571 -0.2203 2.1399 33 1 1.6977 -1.7555 1.2387 34 1 3.9415 -1.2842 2.0988 35 1 3.9164 0.3403 1.3686 36 1 7.0362 -3.6971 2.0318 37 1 3.9417 -1.2850 -2.0980 38 1 3.9143 0.3405 -1.3672 39 1 1.3671 -2.5428 -0.3917 40 1 0.7822 -4.2763 -0.2347 41 1 0.0102 -6.6093 -0.2179 42 1 -0.2236 -7.8506 -2.3288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968158366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = -34.421874 kcal Electronic energy + Delta-G solvation = -28215.064289 eV Core-core repulsion = 24136.192056 eV Total energy + Delta-G solvation = -4078.872233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.89692 -40.23949 -38.94606 -37.66851 -36.66655 -34.46040 -33.04639 -31.56209 -31.39292 -30.63195 -29.51490 -27.63487 -24.63846 -23.78630 -23.06516 -22.56705 -21.37580 -20.83776 -18.98922 -18.38523 -17.29456 -16.78309 -16.66295 -15.88744 -15.69916 -15.36007 -15.25091 -14.81049 -14.67028 -14.15327 -13.79689 -13.77419 -13.49450 -13.43197 -13.36994 -13.07725 -12.61084 -12.49480 -12.34986 -12.01079 -11.78818 -11.74481 -11.60695 -11.52832 -11.28726 -11.25293 -10.73496 -10.65189 -10.27946 -9.96667 -9.75981 -9.68362 -9.46203 -9.25115 -8.92255 -8.87846 -8.48981 -6.98387 -5.97360 -3.33235 0.47842 0.77583 1.75709 2.76991 3.27169 3.31193 3.46207 3.48367 3.62289 3.89209 4.46382 4.49598 4.53531 4.72495 4.88331 4.91379 4.93632 5.06591 5.14056 5.21996 5.38989 5.57797 5.62885 5.67756 5.68954 5.78530 5.80354 5.92693 5.95537 6.01924 6.04696 6.16834 6.26825 6.32410 6.37584 6.48160 6.56539 6.65539 6.72055 6.90311 7.76161 7.93724 8.30560 8.44639 8.91859 9.69555 10.06086 11.18560 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.003761 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.565746 B = 7443.262784 C = 8295.140612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.122 3.878 6 N -0.602 5.602 7 C -0.255 4.255 8 H 0.083 0.917 9 C 0.024 3.976 10 N -0.908 5.908 11 Si 0.882 3.118 12 H -0.290 1.290 13 H -0.305 1.305 14 H -0.271 1.271 15 C 0.136 3.864 16 C 0.135 3.865 17 H 0.085 0.915 18 N -0.691 5.691 19 C 0.558 3.442 20 O -0.531 6.531 21 C -0.152 4.152 22 C -0.048 4.048 23 C -0.125 4.125 24 C -0.062 4.062 25 C -0.088 4.088 26 Cl -0.049 7.049 27 C 0.167 3.833 28 F -0.102 7.102 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.262 0.738 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.399 0.601 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.325 -2.643 -2.900 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.325 5.325 7 C -0.383 4.383 8 H 0.101 0.899 9 C -0.175 4.175 10 N -0.551 5.551 11 Si 0.713 3.287 12 H -0.218 1.218 13 H -0.233 1.233 14 H -0.196 1.196 15 C 0.009 3.991 16 C 0.029 3.971 17 H 0.103 0.897 18 N -0.343 5.343 19 C 0.344 3.656 20 O -0.409 6.409 21 C -0.156 4.156 22 C -0.067 4.067 23 C -0.143 4.143 24 C -0.081 4.081 25 C -0.116 4.116 26 Cl -0.020 7.020 27 C 0.146 3.854 28 F -0.080 7.080 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.236 0.764 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.980 -2.380 -3.753 17.552 hybrid contribution 0.398 0.462 0.889 1.078 sum -16.582 -1.918 -2.865 16.937 Atomic orbital electron populations 1.21839 0.95447 1.01595 1.01305 1.21332 0.95123 0.99916 0.95019 0.90065 1.22090 0.98663 0.99857 0.96307 1.21375 0.91493 0.97136 0.90323 1.44317 1.48830 1.40287 0.99079 1.18883 1.09711 1.02491 1.07224 0.89895 1.25272 0.97374 0.96598 0.98246 1.69835 1.32629 1.22009 1.30615 0.86969 0.76278 0.84968 0.80461 1.21773 1.23288 1.19632 1.21347 0.90498 0.97294 0.89974 1.21574 0.96984 0.80640 0.97899 0.89721 1.45726 1.66491 1.13928 1.08138 1.17736 0.78400 0.84861 0.84595 1.90822 1.50364 1.69248 1.30460 1.20136 1.06638 0.96294 0.92539 1.21395 0.93493 0.94970 0.96792 1.21127 1.00686 0.94193 0.98301 1.21139 0.96573 1.00572 0.89775 1.20895 1.08897 0.91959 0.89838 1.98388 1.96327 1.74576 1.32678 1.17361 0.97053 0.89216 0.81800 1.91630 1.89751 1.83113 1.43509 0.92910 0.92797 0.92895 0.92251 0.92227 0.90845 0.95606 0.92827 0.91206 0.94936 0.76445 0.83939 0.83641 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.05 37.16 0.34 -1.24 16 2 C -0.09 -1.28 2.48 -90.58 -0.22 -1.50 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.13 -1.95 5.20 -26.61 -0.14 -2.08 16 5 C 0.12 2.43 4.21 -3.71 -0.02 2.42 16 6 N -0.60 -13.44 2.69 -172.32 -0.46 -13.90 16 7 C -0.25 -6.88 10.03 -15.06 -0.15 -7.03 16 8 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 9 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 10 N -0.91 -27.16 13.97 55.49 0.78 -26.39 16 11 Si 0.88 21.76 24.34 -169.99 -4.14 17.62 16 12 H -0.29 -6.81 6.62 56.52 0.37 -6.43 16 13 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 14 H -0.27 -6.61 6.64 56.52 0.38 -6.23 16 15 C 0.14 2.67 6.12 -3.71 -0.02 2.65 16 16 C 0.13 2.15 2.24 -67.81 -0.15 2.00 16 17 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 18 N -0.69 -10.75 4.20 -54.68 -0.23 -10.98 16 19 C 0.56 9.61 7.74 -12.40 -0.10 9.51 16 20 O -0.53 -10.87 15.00 5.30 0.08 -10.79 16 21 C -0.15 -2.24 5.88 -104.92 -0.62 -2.86 16 22 C -0.05 -0.54 9.54 -39.19 -0.37 -0.92 16 23 C -0.12 -1.15 10.03 -39.64 -0.40 -1.54 16 24 C -0.06 -0.59 9.82 -39.48 -0.39 -0.98 16 25 C -0.09 -1.08 6.32 -39.48 -0.25 -1.33 16 26 Cl -0.05 -0.56 28.61 -51.86 -1.48 -2.05 16 27 C 0.17 2.51 7.26 -38.93 -0.28 2.23 16 28 F -0.10 -1.77 15.12 2.25 0.03 -1.74 16 29 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.87 6.40 -51.92 -0.33 0.54 16 34 H 0.07 1.62 4.50 -51.93 -0.23 1.39 16 35 H 0.03 0.52 7.07 -51.93 -0.37 0.15 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 1.54 7.93 -51.93 -0.41 1.12 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 5.58 4.67 -40.82 -0.19 5.39 16 40 H 0.14 1.40 6.40 -52.49 -0.34 1.07 16 41 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -32.39 350.71 -8.23 -40.63 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.23 Total: 2.41 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.86 Total: -0.10 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.08 Total: -51.26 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.03 Total: -1.74 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.62 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.39 -8.23 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968158366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.203 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds