Wall clock time and date at job start Sat Apr 11 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46564 * 2 1 4 4 C 1.53046 * 109.45790 * 119.95325 * 2 1 3 5 5 C 1.53190 * 109.31281 * 181.38303 * 4 2 1 6 6 N 1.46928 * 108.77704 * 305.36707 * 5 4 2 7 7 C 1.36932 * 120.62742 * 233.62919 * 6 5 4 8 8 H 1.08007 * 119.99621 * 152.61036 * 7 6 5 9 9 C 1.38811 * 120.00415 * 332.60771 * 7 6 5 10 10 N 1.31620 * 119.99933 * 159.36253 * 9 7 6 11 11 Si 1.86798 * 120.00113 * 339.35772 * 9 7 6 12 12 H 1.48496 * 109.46899 * 92.90191 * 11 9 7 13 13 H 1.48496 * 109.47202 * 212.90397 * 11 9 7 14 14 H 1.48503 * 109.46761 * 332.90616 * 11 9 7 15 15 C 1.46922 * 118.73740 * 53.61118 * 6 5 4 16 16 C 1.53038 * 109.46214 * 240.01916 * 2 1 3 17 17 H 1.09005 * 109.49605 * 58.66731 * 16 2 1 18 18 N 1.46502 * 109.50251 * 298.60268 * 16 2 1 19 19 C 1.34770 * 120.00317 * 154.99679 * 18 16 2 20 20 O 1.21579 * 119.99785 * 0.02562 * 19 18 16 21 21 C 1.47691 * 120.00340 * 180.02562 * 19 18 16 22 22 C 1.39672 * 120.15618 * 359.97438 * 21 19 18 23 23 C 1.37855 * 119.90056 * 180.02562 * 22 21 19 24 24 C 1.38448 * 120.23231 * 0.02562 * 23 22 21 25 25 C 1.38303 * 120.32507 * 0.02562 * 24 23 22 26 26 Cl 1.73600 * 119.95382 * 179.97438 * 25 24 23 27 27 C 1.38435 * 120.09305 * 359.67404 * 25 24 23 28 28 F 1.35098 * 120.11944 * 180.29954 * 27 25 24 29 29 H 1.08992 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47257 * 299.98213 * 1 2 3 31 31 H 1.09003 * 109.46683 * 59.97662 * 1 2 3 32 32 H 1.08997 * 109.49680 * 301.33981 * 4 2 1 33 33 H 1.09009 * 109.49428 * 61.43429 * 4 2 1 34 34 H 1.09003 * 109.58642 * 185.58109 * 5 4 2 35 35 H 1.09000 * 109.70404 * 65.22646 * 5 4 2 36 36 H 0.97000 * 119.99782 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.58454 * 186.60636 * 15 6 5 38 38 H 1.08993 * 109.58866 * 66.17447 * 15 6 5 39 39 H 0.96998 * 119.99661 * 335.00061 * 18 16 2 40 40 H 1.08000 * 120.05416 * 359.97438 * 22 21 19 41 41 H 1.08007 * 119.88561 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.84202 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7205 1.2503 5 6 3.5713 -0.6884 1.2645 6 7 4.0678 -1.2489 0.0004 7 6 4.9756 -2.2741 0.0007 8 1 5.0116 -2.9637 -0.8298 9 6 5.8496 -2.4270 1.0682 10 7 6.4257 -3.5902 1.2857 11 14 6.2083 -0.9817 2.1960 12 1 5.2790 -1.0148 3.3537 13 1 7.6086 -1.0691 2.6825 14 1 6.0224 0.2877 1.4482 15 6 3.5714 -0.6889 -1.2640 16 6 2.0399 -0.7210 -1.2499 17 1 1.6573 -0.2212 -2.1398 18 7 1.5795 -2.1118 -1.2342 19 6 1.4509 -2.7921 -2.3905 20 8 1.7175 -2.2519 -3.4465 21 6 0.9863 -4.1939 -2.3748 22 6 0.6797 -4.8180 -1.1634 23 6 0.2469 -6.1268 -1.1548 24 6 0.1155 -6.8254 -2.3429 25 6 0.4176 -6.2171 -3.5477 26 17 0.2501 -7.1023 -5.0317 27 6 0.8473 -4.9014 -3.5725 28 9 1.1367 -4.3048 -4.7495 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8901 31 1 -0.3633 0.5142 -0.8898 32 1 1.6571 -0.2203 2.1399 33 1 1.6977 -1.7555 1.2387 34 1 3.9415 -1.2842 2.0988 35 1 3.9164 0.3403 1.3686 36 1 7.0362 -3.6971 2.0318 37 1 3.9417 -1.2850 -2.0980 38 1 3.9143 0.3405 -1.3672 39 1 1.3671 -2.5428 -0.3917 40 1 0.7822 -4.2763 -0.2347 41 1 0.0102 -6.6093 -0.2179 42 1 -0.2236 -7.8506 -2.3288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968158366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:42 Heat of formation + Delta-G solvation = -55.001985 kcal Electronic energy + Delta-G solvation = -28215.956709 eV Core-core repulsion = 24136.192056 eV Total energy + Delta-G solvation = -4079.764653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.07928 -41.49545 -40.04256 -39.00333 -37.61184 -36.11466 -34.39501 -33.37057 -32.59408 -31.56673 -30.84426 -29.09908 -25.98799 -25.20154 -24.30867 -23.68808 -22.94128 -21.99135 -20.44089 -19.47634 -18.73105 -18.25345 -17.81335 -17.20259 -17.06001 -16.74088 -16.63162 -16.06868 -15.72069 -15.55089 -15.25476 -15.17372 -14.90199 -14.84095 -14.43264 -14.22395 -14.07389 -13.82880 -13.60820 -13.40306 -13.10030 -12.95260 -12.71179 -12.62686 -12.60221 -12.33879 -12.20398 -12.18445 -11.84167 -11.55984 -11.38822 -11.15636 -11.02636 -10.71800 -10.28847 -10.00253 -9.85997 -8.86034 -8.14029 -5.45890 -0.50099 -0.16635 0.82685 1.30371 1.44863 1.52941 1.67267 2.11523 2.42685 2.51266 2.89748 3.09788 3.31697 3.43547 3.66635 3.76115 3.81766 3.90596 4.01529 4.06705 4.28771 4.33169 4.53939 4.55948 4.67167 4.70355 4.71415 4.77501 4.87266 4.94819 4.96407 4.99699 5.04207 5.10260 5.14471 5.21507 5.38708 5.46174 5.50416 5.58723 5.87899 6.13100 6.49751 6.93652 7.15836 7.64011 8.03168 9.06003 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.003761 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.565746 B = 7443.262784 C = 8295.140612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.091 0.909 4 C -0.121 4.121 5 C 0.115 3.885 6 N -0.610 5.610 7 C -0.240 4.240 8 H 0.036 0.964 9 C -0.031 4.031 10 N -0.956 5.956 11 Si 0.950 3.050 12 H -0.265 1.265 13 H -0.318 1.318 14 H -0.265 1.265 15 C 0.135 3.865 16 C 0.141 3.859 17 H 0.084 0.916 18 N -0.683 5.683 19 C 0.551 3.449 20 O -0.576 6.576 21 C -0.178 4.178 22 C -0.048 4.048 23 C -0.107 4.107 24 C -0.047 4.047 25 C -0.094 4.094 26 Cl -0.047 7.047 27 C 0.133 3.867 28 F -0.128 7.128 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.033 0.967 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.407 0.593 40 H 0.159 0.841 41 H 0.190 0.810 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.099 -2.280 -0.168 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.110 0.890 4 C -0.160 4.160 5 C -0.010 4.010 6 N -0.335 5.335 7 C -0.370 4.370 8 H 0.053 0.947 9 C -0.226 4.226 10 N -0.602 5.602 11 Si 0.779 3.221 12 H -0.191 1.191 13 H -0.247 1.247 14 H -0.190 1.190 15 C 0.009 3.991 16 C 0.035 3.965 17 H 0.102 0.898 18 N -0.334 5.334 19 C 0.339 3.661 20 O -0.457 6.457 21 C -0.182 4.182 22 C -0.067 4.067 23 C -0.125 4.125 24 C -0.065 4.065 25 C -0.122 4.122 26 Cl -0.018 7.018 27 C 0.111 3.889 28 F -0.106 7.106 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.246 0.754 40 H 0.176 0.824 41 H 0.207 0.793 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -19.811 -1.989 -0.997 19.935 hybrid contribution 1.251 0.253 -0.035 1.276 sum -18.560 -1.737 -1.032 18.670 Atomic orbital electron populations 1.21770 0.92780 1.02286 1.02591 1.21303 0.97158 0.99612 0.92417 0.89030 1.22008 0.94596 1.00960 0.98436 1.21500 0.95037 0.96511 0.87911 1.44331 1.48441 1.39653 1.01061 1.18646 1.10529 1.02431 1.05381 0.94665 1.25858 0.97550 0.98758 1.00410 1.69971 1.34153 1.24114 1.32004 0.85884 0.75515 0.81430 0.79279 1.19118 1.24740 1.19018 1.21391 0.93343 0.96703 0.87697 1.21468 0.93937 0.81338 0.99792 0.89772 1.45667 1.65734 1.13830 1.08152 1.18241 0.77653 0.85962 0.84273 1.90783 1.52455 1.70496 1.31997 1.20094 1.08851 0.95258 0.93988 1.21680 0.92931 0.96177 0.95899 1.21641 0.98109 0.92902 0.99862 1.21656 0.94345 1.01975 0.88560 1.21092 1.08949 0.91070 0.91079 1.98385 1.96294 1.74132 1.32944 1.17770 0.99226 0.90658 0.81225 1.91552 1.90392 1.83795 1.44865 0.92573 0.90533 0.92625 0.88805 0.91853 0.92841 0.94900 0.93034 0.95055 0.93887 0.75403 0.82378 0.79318 0.79912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.05 71.98 0.65 -1.78 16 2 C -0.09 -2.04 2.48 -10.77 -0.03 -2.07 16 3 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.12 -3.17 5.20 30.67 0.16 -3.01 16 5 C 0.11 4.30 4.21 86.36 0.36 4.66 16 6 N -0.61 -27.33 2.69 -699.10 -1.88 -29.20 16 7 C -0.24 -13.42 10.03 84.03 0.84 -12.57 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 9 C -0.03 -1.77 5.23 84.86 0.44 -1.32 16 10 N -0.96 -58.95 13.97 21.65 0.30 -58.65 16 11 Si 0.95 45.12 24.34 68.60 1.67 46.79 16 12 H -0.27 -11.44 6.62 99.48 0.66 -10.78 16 13 H -0.32 -15.72 7.11 99.48 0.71 -15.02 16 14 H -0.27 -12.20 6.64 99.48 0.66 -11.54 16 15 C 0.13 5.43 6.12 86.36 0.53 5.95 16 16 C 0.14 4.40 2.24 45.07 0.10 4.50 16 17 H 0.08 2.68 7.58 -2.38 -0.02 2.67 16 18 N -0.68 -21.16 4.20 -445.17 -1.87 -23.03 16 19 C 0.55 19.79 7.74 86.74 0.67 20.46 16 20 O -0.58 -25.23 15.00 -3.97 -0.06 -25.29 16 21 C -0.18 -5.35 5.88 -20.06 -0.12 -5.47 16 22 C -0.05 -1.02 9.54 22.53 0.21 -0.80 16 23 C -0.11 -1.58 10.03 22.23 0.22 -1.36 16 24 C -0.05 -0.75 9.82 22.34 0.22 -0.53 16 25 C -0.09 -2.25 6.32 22.33 0.14 -2.11 16 26 Cl -0.05 -1.06 28.61 -2.72 -0.08 -1.13 16 27 C 0.13 4.14 7.26 22.69 0.16 4.30 16 28 F -0.13 -4.78 15.12 44.97 0.68 -4.10 16 29 H 0.06 0.97 7.54 -2.39 -0.02 0.95 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.63 6.40 -2.38 -0.02 1.61 16 34 H 0.05 2.23 4.50 -2.39 -0.01 2.22 16 35 H 0.03 1.21 7.07 -2.39 -0.02 1.19 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.03 1.47 7.93 -2.39 -0.02 1.45 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 10.88 4.67 -92.71 -0.43 10.45 16 40 H 0.16 2.73 6.40 -2.91 -0.02 2.72 16 41 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 42 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -76.65 350.71 3.88 -72.77 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.54 Total: 13.02 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 4.58 Total: 8.84 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -3.45 Total: -110.89 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.06 Total: -25.29 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.68 Total: -4.10 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.13 kcal Total: -76.65 3.88 -72.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968158366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.767 kcal (2) G-P(sol) polarization free energy of solvation -76.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds