Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.44997 * 2 1 4 4 C 1.53041 * 109.48615 * 119.94286 * 2 1 3 5 5 C 1.53193 * 109.34006 * 181.35631 * 4 2 1 6 6 N 1.46929 * 108.77326 * 305.38036 * 5 4 2 7 7 C 1.36938 * 120.62888 * 233.63263 * 6 5 4 8 8 H 1.08001 * 120.00077 * 27.66063 * 7 6 5 9 9 C 1.38813 * 120.00071 * 207.67004 * 7 6 5 10 10 N 1.31619 * 119.99951 * 17.35269 * 9 7 6 11 11 Si 1.86800 * 120.00157 * 197.36312 * 9 7 6 12 12 H 1.48497 * 109.47060 * 59.99311 * 11 9 7 13 13 H 1.48495 * 109.46818 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46525 * 299.99365 * 11 9 7 15 15 C 1.46919 * 118.73863 * 53.60909 * 6 5 4 16 16 C 1.53034 * 109.46373 * 240.02762 * 2 1 3 17 17 H 1.09003 * 109.49894 * 298.60085 * 16 2 1 18 18 N 1.46502 * 109.49532 * 58.65892 * 16 2 1 19 19 C 1.34776 * 120.00014 * 204.93480 * 18 16 2 20 20 O 1.21559 * 120.00223 * 0.02562 * 19 18 16 21 21 C 1.47780 * 119.99841 * 180.02562 * 19 18 16 22 22 C 1.39613 * 120.14418 * 359.72982 * 21 19 18 23 23 C 1.38123 * 119.83738 * 179.74180 * 22 21 19 24 24 F 1.35093 * 119.93288 * 180.23327 * 23 22 21 25 25 C 1.38626 * 120.12923 * 0.50692 * 23 22 21 26 26 C 1.38241 * 120.28960 * 359.76791 * 25 23 22 27 27 C 1.38153 * 120.16366 * 359.97438 * 26 25 23 28 28 Cl 1.73593 * 120.06699 * 179.97438 * 27 26 25 29 29 H 1.09007 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47335 * 299.96780 * 1 2 3 31 31 H 1.09002 * 109.47520 * 59.97233 * 1 2 3 32 32 H 1.09002 * 109.47328 * 61.40207 * 4 2 1 33 33 H 1.09006 * 109.49708 * 301.32253 * 4 2 1 34 34 H 1.09000 * 109.58586 * 185.59386 * 5 4 2 35 35 H 1.08997 * 109.58848 * 65.16976 * 5 4 2 36 36 H 0.96996 * 120.00257 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.58804 * 186.60530 * 15 6 5 38 38 H 1.09003 * 109.58908 * 66.17795 * 15 6 5 39 39 H 0.97005 * 119.99795 * 24.94442 * 18 16 2 40 40 H 1.07997 * 120.07912 * 359.97438 * 22 21 19 41 41 H 1.08000 * 119.85344 * 179.73952 * 25 23 22 42 42 H 1.08003 * 119.91392 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7201 1.2502 5 6 3.5720 -0.6886 1.2640 6 7 4.0679 -1.2495 -0.0003 7 6 4.9753 -2.2750 -0.0001 8 1 5.0080 -2.9671 0.8284 9 6 5.8532 -2.4251 -1.0649 10 7 6.0598 -1.4238 -1.8937 11 14 6.7413 -4.0484 -1.3215 12 1 5.7452 -5.1312 -1.5224 13 1 7.6143 -3.9510 -2.5188 14 1 7.5700 -4.3532 -0.1275 15 6 3.5714 -0.6894 -1.2645 16 6 2.0399 -0.7208 -1.2499 17 1 1.6973 -1.7556 -1.2384 18 7 1.5255 -0.0489 -2.4459 19 6 1.3983 -0.7323 -3.6006 20 8 1.7100 -1.9062 -3.6497 21 6 0.8800 -0.0543 -4.8071 22 6 0.5159 1.2924 -4.7527 23 6 0.0372 1.9212 -5.8855 24 9 -0.3112 3.2255 -5.8362 25 6 -0.0917 1.2150 -7.0714 26 6 0.2619 -0.1202 -7.1298 27 6 0.7470 -0.7596 -6.0054 28 17 1.1897 -2.4365 -6.0814 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5133 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 1.6980 -1.7549 1.2388 33 1 1.6582 -0.2196 2.1399 34 1 3.9422 -1.2845 2.0982 35 1 3.9154 0.3407 1.3667 36 1 6.6730 -1.5287 -2.6379 37 1 3.9412 -1.2857 -2.0986 38 1 3.9147 0.3400 -1.3680 39 1 1.2766 0.8878 -2.4066 40 1 0.6119 1.8421 -3.8280 41 1 -0.4704 1.7100 -7.9534 42 1 0.1586 -0.6646 -8.0568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968353734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -34.482009 kcal Electronic energy + Delta-G solvation = -27769.441054 eV Core-core repulsion = 23690.566214 eV Total energy + Delta-G solvation = -4078.874840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.22833 -40.22947 -38.70762 -37.36362 -36.35164 -34.39070 -33.24294 -31.79203 -30.93534 -30.44935 -28.77769 -27.34436 -24.62116 -23.99564 -23.07079 -22.05700 -21.05078 -20.27889 -19.53704 -18.23448 -17.05807 -16.80518 -16.74059 -16.09074 -15.96380 -15.37484 -14.92537 -14.61421 -14.44158 -13.87778 -13.76698 -13.73900 -13.56460 -13.37308 -13.16291 -12.86315 -12.65513 -12.40136 -12.01980 -11.89706 -11.63942 -11.58962 -11.33493 -11.09818 -10.88895 -10.68595 -10.62834 -10.45148 -10.17045 -9.93640 -9.86713 -9.54565 -9.49293 -9.24753 -8.83180 -8.52944 -8.40432 -6.64648 -5.73952 -3.16941 0.39616 0.68056 2.08798 2.72249 3.30975 3.44821 3.50710 3.53041 3.61766 3.82523 4.26220 4.37989 4.55908 4.74369 4.85404 5.13177 5.22456 5.24734 5.31274 5.39500 5.51253 5.52291 5.59828 5.63262 5.76277 5.90323 5.98904 6.02274 6.11081 6.23219 6.29325 6.38151 6.45521 6.51468 6.72318 6.75137 6.90489 6.96844 7.28968 7.73412 7.80952 7.87214 8.48613 8.54233 9.24640 9.88683 10.43218 11.34095 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011006 B = 0.004108 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.419260 B = 6813.790596 C = 8354.690732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.258 4.258 8 H 0.066 0.934 9 C 0.009 3.991 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.166 3.834 16 C 0.125 3.875 17 H 0.085 0.915 18 N -0.711 5.711 19 C 0.546 3.454 20 O -0.499 6.499 21 C -0.089 4.089 22 C -0.113 4.113 23 C 0.095 3.905 24 F -0.133 7.133 25 C -0.124 4.124 26 C -0.092 4.092 27 C -0.001 4.001 28 Cl -0.018 7.018 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.018 0.982 36 H 0.254 0.746 37 H 0.097 0.903 38 H 0.017 0.983 39 H 0.390 0.610 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.603 7.775 -7.756 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.387 4.387 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.542 5.542 11 Si 0.731 3.269 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.039 3.961 16 C 0.020 3.980 17 H 0.103 0.897 18 N -0.362 5.362 19 C 0.331 3.669 20 O -0.373 6.373 21 C -0.093 4.093 22 C -0.132 4.132 23 C 0.076 3.924 24 F -0.112 7.112 25 C -0.143 4.143 26 C -0.111 4.111 27 C -0.029 4.029 28 Cl 0.012 6.988 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.035 0.965 39 H 0.224 0.776 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.188 6.786 -7.898 18.415 hybrid contribution 0.329 -0.021 -0.254 0.416 sum -14.859 6.765 -8.152 18.249 Atomic orbital electron populations 1.21853 0.95990 1.01628 1.00691 1.21311 0.94567 0.99691 0.95610 0.91503 1.22070 0.98963 1.00058 0.95382 1.20962 0.90798 0.96463 0.90207 1.43944 1.48140 1.39777 0.99143 1.19100 1.09932 1.03260 1.06456 0.91655 1.25006 0.97099 0.97336 0.99619 1.69998 1.37465 1.29103 1.17676 0.86391 0.79193 0.84093 0.77240 1.20860 1.21629 1.20915 1.21108 0.86342 0.97504 0.91145 1.22053 0.98433 0.96427 0.81047 0.89706 1.45994 1.65818 1.13894 1.10514 1.17848 0.79476 0.86878 0.82735 1.90931 1.47759 1.14931 1.83709 1.19859 1.01555 0.93192 0.94690 1.21276 0.99386 0.93904 0.98671 1.17523 1.01152 0.78977 0.94798 1.91535 1.89736 1.32867 1.97056 1.21239 1.01271 0.94337 0.97462 1.20930 0.98357 0.93897 0.97890 1.21113 0.99443 0.88592 0.93794 1.98450 1.90317 1.11784 1.98256 0.92856 0.93093 0.93335 0.92067 0.92601 0.92602 0.96439 0.93593 0.88537 0.96541 0.77609 0.83528 0.83506 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.02 37.16 0.34 -1.49 16 2 C -0.09 -1.44 2.27 -90.58 -0.21 -1.65 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.12 -2.07 5.36 -26.61 -0.14 -2.21 16 5 C 0.14 2.91 6.52 -3.71 -0.02 2.89 16 6 N -0.59 -14.78 2.99 -172.32 -0.52 -15.30 16 7 C -0.26 -7.23 9.58 -15.06 -0.14 -7.37 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 9 C 0.01 0.25 4.91 -17.43 -0.09 0.16 16 10 N -0.90 -26.81 11.19 55.49 0.62 -26.18 16 11 Si 0.90 22.61 29.59 -169.99 -5.03 17.58 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.17 3.99 4.89 -3.72 -0.02 3.97 16 16 C 0.13 2.37 2.06 -67.81 -0.14 2.23 16 17 H 0.08 1.84 7.58 -51.93 -0.39 1.44 16 18 N -0.71 -11.26 4.32 -54.66 -0.24 -11.50 16 19 C 0.55 9.44 7.73 -12.36 -0.10 9.35 16 20 O -0.50 -10.63 13.63 5.31 0.07 -10.56 16 21 C -0.09 -1.22 5.88 -104.94 -0.62 -1.84 16 22 C -0.11 -1.23 9.52 -39.11 -0.37 -1.61 16 23 C 0.09 0.95 7.29 -39.48 -0.29 0.66 16 24 F -0.13 -1.35 17.26 2.25 0.04 -1.31 16 25 C -0.12 -1.05 10.02 -39.44 -0.40 -1.45 16 26 C -0.09 -0.88 9.81 -39.61 -0.39 -1.26 16 27 C 0.00 -0.01 6.35 -39.07 -0.25 -0.26 16 28 Cl -0.02 -0.27 26.02 -51.86 -1.35 -1.62 16 29 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.55 7.36 -51.93 -0.38 0.17 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.10 2.75 6.04 -51.93 -0.31 2.43 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.39 4.86 6.34 -40.82 -0.26 4.60 16 40 H 0.15 1.32 6.40 -52.49 -0.34 0.98 16 41 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -32.51 358.48 -9.28 -41.78 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.45 Total: 1.60 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.83 Total: 0.11 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.13 Total: -52.98 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.35 Total: -1.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.51 -9.28 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968353734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.300 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds