Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.44879 * 2 1 4 4 C 1.53039 * 109.45777 * 240.03915 * 2 1 3 5 5 C 1.53186 * 109.31527 * 178.61295 * 4 2 1 6 6 N 1.46933 * 108.77664 * 54.63359 * 5 4 2 7 7 C 1.36932 * 120.62996 * 126.36737 * 6 5 4 8 8 H 1.07997 * 120.00574 * 331.83711 * 7 6 5 9 9 C 1.38817 * 119.99792 * 151.83243 * 7 6 5 10 10 N 1.31618 * 119.99841 * 343.08975 * 9 7 6 11 11 Si 1.86801 * 119.99777 * 163.08473 * 9 7 6 12 12 H 1.48500 * 109.46818 * 90.00467 * 11 9 7 13 13 H 1.48508 * 109.46877 * 210.00219 * 11 9 7 14 14 H 1.48495 * 109.47387 * 330.00367 * 11 9 7 15 15 C 1.46928 * 118.73575 * 306.39581 * 6 5 4 16 16 C 1.53039 * 109.46141 * 119.97070 * 2 1 3 17 17 H 1.09001 * 109.49772 * 301.37056 * 16 2 1 18 18 N 1.46503 * 109.49618 * 61.43396 * 16 2 1 19 19 C 1.34772 * 119.99709 * 204.72420 * 18 16 2 20 20 O 1.21564 * 120.00439 * 359.97438 * 19 18 16 21 21 C 1.47781 * 120.00166 * 179.97438 * 19 18 16 22 22 C 1.39613 * 120.14025 * 0.02562 * 21 19 18 23 23 C 1.38118 * 119.83544 * 180.02562 * 22 21 19 24 24 F 1.35099 * 119.93290 * 179.97438 * 23 22 21 25 25 C 1.38624 * 120.13197 * 359.97152 * 23 22 21 26 26 C 1.38233 * 120.29289 * 0.02562 * 25 23 22 27 27 C 1.38155 * 120.15951 * 359.76577 * 26 25 23 28 28 Cl 1.73601 * 120.06909 * 180.25678 * 27 26 25 29 29 H 1.09000 * 109.46910 * 300.02839 * 1 2 3 30 30 H 1.08995 * 109.47545 * 60.02957 * 1 2 3 31 31 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.49784 * 298.56729 * 4 2 1 33 33 H 1.09002 * 109.49677 * 58.65877 * 4 2 1 34 34 H 1.09003 * 109.59426 * 174.42230 * 5 4 2 35 35 H 1.09000 * 109.58780 * 294.70466 * 5 4 2 36 36 H 0.96997 * 119.99742 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.58351 * 293.81822 * 15 6 5 38 38 H 1.08998 * 109.58196 * 173.39420 * 15 6 5 39 39 H 0.96998 * 120.00575 * 24.99870 * 18 16 2 40 40 H 1.07998 * 120.08044 * 359.97431 * 22 21 19 41 41 H 1.08002 * 119.85229 * 180.02562 * 25 23 22 42 42 H 1.07999 * 119.92644 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5712 -0.6885 -1.2645 6 7 4.0679 -1.2488 -0.0002 7 6 4.9757 -2.2740 -0.0004 8 1 5.0030 -2.9710 -0.8248 9 6 5.8609 -2.4173 1.0592 10 7 6.0661 -1.4137 1.8857 11 14 6.7609 -4.0345 1.3122 12 1 8.0452 -4.0080 0.5671 13 1 7.0321 -4.2290 2.7593 14 1 5.9210 -5.1521 0.8113 15 6 3.5714 -0.6887 1.2641 16 6 2.0399 -0.7208 1.2500 17 1 1.6567 -0.2212 2.1398 18 7 1.5801 -2.1118 1.2340 19 6 1.4569 -2.7940 2.3898 20 8 1.7277 -2.2554 3.4454 21 6 0.9926 -4.1969 2.3738 22 6 0.6813 -4.8186 1.1632 23 6 0.2475 -6.1298 1.1556 24 9 -0.0548 -6.7332 -0.0147 25 6 0.1216 -6.8280 2.3466 26 6 0.4284 -6.2178 3.5484 27 6 0.8676 -4.9081 3.5696 28 17 1.2586 -4.1461 5.0796 29 1 -0.3633 0.5143 0.8897 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3634 -1.0277 0.0005 32 1 1.6977 -1.7555 -1.2385 33 1 1.6570 -0.2205 -2.1399 34 1 3.9416 -1.2844 -2.0987 35 1 3.9141 0.3408 -1.3701 36 1 6.6844 -1.5139 2.6263 37 1 3.9143 0.3408 1.3672 38 1 3.9418 -1.2847 2.0981 39 1 1.3682 -2.5430 0.3914 40 1 0.7788 -4.2753 0.2349 41 1 -0.2177 -7.8533 2.3354 42 1 0.3278 -6.7671 4.4727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968353737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -50.900459 kcal Electronic energy + Delta-G solvation = -28530.284638 eV Core-core repulsion = 24450.697840 eV Total energy + Delta-G solvation = -4079.586798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.02062 -41.46109 -39.96968 -38.68058 -37.37730 -35.92812 -34.45492 -32.96702 -32.56103 -31.32126 -30.57103 -28.90625 -26.03607 -25.35751 -24.08495 -23.43914 -22.73905 -21.90618 -20.30658 -19.51906 -18.66273 -17.83073 -17.67552 -17.21576 -16.83098 -16.76413 -16.44082 -15.90602 -15.71481 -15.57520 -15.14374 -14.85713 -14.76466 -14.70736 -14.47785 -14.09978 -13.93581 -13.61339 -13.52715 -13.13514 -13.01039 -12.74603 -12.65335 -12.59648 -12.49313 -12.30952 -12.27289 -12.17406 -11.93320 -11.56078 -11.27499 -11.05954 -10.60893 -10.49898 -10.38990 -9.94504 -9.68423 -8.62913 -7.85999 -5.30411 -0.50450 -0.14351 1.09647 1.38422 1.41898 1.48806 1.73586 2.19187 2.47900 2.55941 2.99496 3.30093 3.45418 3.55562 3.70122 3.88071 3.91225 3.99295 4.03303 4.13817 4.31006 4.52874 4.54021 4.67788 4.71876 4.73102 4.82521 4.84946 4.91054 4.96307 4.97968 5.10088 5.17825 5.25090 5.27474 5.47220 5.51445 5.52037 5.60851 5.72722 5.73957 6.39904 6.62170 7.15384 7.30499 7.88859 8.39440 9.18693 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.005414 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.544671 B = 5170.766796 C = 5968.090607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.248 4.248 8 H 0.069 0.931 9 C -0.048 4.048 10 N -0.932 5.932 11 Si 0.948 3.052 12 H -0.282 1.282 13 H -0.302 1.302 14 H -0.268 1.268 15 C 0.171 3.829 16 C 0.139 3.861 17 H 0.067 0.933 18 N -0.683 5.683 19 C 0.542 3.458 20 O -0.554 6.554 21 C -0.113 4.113 22 C -0.110 4.110 23 C 0.094 3.906 24 F -0.131 7.131 25 C -0.103 4.103 26 C -0.084 4.084 27 C -0.018 4.018 28 Cl -0.045 7.045 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.013 0.987 36 H 0.244 0.756 37 H -0.003 1.003 38 H 0.050 0.950 39 H 0.403 0.597 40 H 0.155 0.845 41 H 0.187 0.813 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.832 -8.430 -2.774 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.322 5.322 7 C -0.378 4.378 8 H 0.086 0.914 9 C -0.244 4.244 10 N -0.578 5.578 11 Si 0.777 3.223 12 H -0.209 1.209 13 H -0.229 1.229 14 H -0.193 1.193 15 C 0.044 3.956 16 C 0.033 3.967 17 H 0.085 0.915 18 N -0.334 5.334 19 C 0.329 3.671 20 O -0.433 6.433 21 C -0.117 4.117 22 C -0.130 4.130 23 C 0.074 3.926 24 F -0.110 7.110 25 C -0.121 4.121 26 C -0.102 4.102 27 C -0.047 4.047 28 Cl -0.016 7.016 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.068 0.932 39 H 0.241 0.759 40 H 0.173 0.827 41 H 0.205 0.795 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -17.501 -7.959 -1.853 19.315 hybrid contribution 1.277 -0.505 0.135 1.380 sum -16.224 -8.463 -1.718 18.379 Atomic orbital electron populations 1.21760 0.93049 1.02106 1.02308 1.21279 0.96866 0.99198 0.93340 0.90442 1.21964 0.95617 1.00349 0.97568 1.21149 0.93700 0.95931 0.88218 1.44157 1.48084 1.39383 1.00614 1.19379 1.09085 1.03370 1.05991 0.91362 1.25672 0.98739 0.99589 1.00400 1.70160 1.38362 1.30707 1.18565 0.85559 0.79061 0.81435 0.76241 1.20857 1.22938 1.19290 1.20884 0.90039 0.95034 0.89673 1.21501 0.95210 0.81245 0.98780 0.91503 1.45640 1.65928 1.13620 1.08196 1.18329 0.78232 0.86102 0.84459 1.90835 1.51006 1.70149 1.31336 1.19661 1.04101 0.94705 0.93233 1.21332 0.99015 0.94624 0.97994 1.17612 1.01416 0.91127 0.82419 1.91545 1.90701 1.82983 1.45737 1.21647 0.98877 1.02449 0.89161 1.21247 0.97226 0.91125 1.00605 1.21368 1.01180 0.94770 0.87335 1.98418 1.92004 1.81952 1.29221 0.93114 0.90533 0.92585 0.92094 0.89028 0.92503 0.96900 0.94672 0.98525 0.93168 0.75913 0.82746 0.79539 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.05 71.98 0.65 -2.28 16 2 C -0.09 -2.50 2.48 -10.77 -0.03 -2.53 16 3 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.12 -3.21 5.20 30.67 0.16 -3.05 16 5 C 0.14 5.11 6.52 86.36 0.56 5.67 16 6 N -0.60 -28.83 2.91 -699.08 -2.03 -30.87 16 7 C -0.25 -13.38 9.58 84.04 0.81 -12.58 16 8 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 9 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 10 N -0.93 -57.60 11.20 21.65 0.24 -57.36 16 11 Si 0.95 46.57 29.59 68.60 2.03 48.60 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 13 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 15 C 0.17 8.40 4.90 86.36 0.42 8.82 16 16 C 0.14 5.20 2.24 45.07 0.10 5.31 16 17 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 18 N -0.68 -23.67 4.20 -445.09 -1.87 -25.54 16 19 C 0.54 20.64 7.73 86.77 0.67 21.31 16 20 O -0.55 -25.07 13.63 -3.92 -0.05 -25.12 16 21 C -0.11 -3.50 5.88 -20.07 -0.12 -3.62 16 22 C -0.11 -2.74 9.52 22.57 0.21 -2.52 16 23 C 0.09 1.95 7.29 22.33 0.16 2.11 16 24 F -0.13 -2.71 17.26 44.97 0.78 -1.93 16 25 C -0.10 -1.66 10.02 22.36 0.22 -1.44 16 26 C -0.08 -1.60 9.81 22.25 0.22 -1.38 16 27 C -0.02 -0.52 6.35 22.60 0.14 -0.38 16 28 Cl -0.05 -1.47 26.02 -2.72 -0.07 -1.55 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.17 7.54 -2.39 -0.02 1.15 16 32 H 0.06 1.61 6.40 -2.39 -0.02 1.59 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 2.09 7.93 -2.39 -0.02 2.07 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.24 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.05 2.97 6.06 -2.39 -0.01 2.96 16 39 H 0.40 11.98 4.67 -92.71 -0.43 11.55 16 40 H 0.15 3.42 6.40 -2.91 -0.02 3.40 16 41 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 42 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -72.38 355.36 4.26 -68.13 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.63 Total: 14.52 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 4.61 Total: 11.10 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -3.66 Total: -113.76 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.55 kcal Total: -72.38 4.26 -68.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968353737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.229 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds