Wall clock time and date at job start Sat Apr 11 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.45382 * 2 1 4 4 C 1.53041 * 109.48410 * 119.95264 * 2 1 3 5 5 C 1.53195 * 109.33767 * 181.35046 * 4 2 1 6 6 N 1.46928 * 108.77639 * 305.38257 * 5 4 2 7 7 C 1.36938 * 120.62788 * 233.62991 * 6 5 4 8 8 H 1.08003 * 119.99922 * 27.66512 * 7 6 5 9 9 C 1.38811 * 119.99934 * 207.65420 * 7 6 5 10 10 N 1.31613 * 120.00033 * 17.37777 * 9 7 6 11 11 Si 1.86797 * 120.00114 * 197.37137 * 9 7 6 12 12 H 1.48508 * 109.47264 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47139 * 120.00168 * 11 9 7 14 14 H 1.48497 * 109.47635 * 240.00409 * 11 9 7 15 15 C 1.46919 * 118.74093 * 53.60400 * 6 5 4 16 16 C 1.53039 * 109.45772 * 240.03328 * 2 1 3 17 17 H 1.09000 * 109.50198 * 298.60088 * 16 2 1 18 18 N 1.46500 * 109.49754 * 58.66613 * 16 2 1 19 19 C 1.34778 * 120.00187 * 204.93377 * 18 16 2 20 20 O 1.21578 * 120.00110 * 0.02562 * 19 18 16 21 21 C 1.47647 * 119.99924 * 179.97438 * 19 18 16 22 22 C 1.39698 * 120.13044 * 0.02562 * 21 19 18 23 23 C 1.37785 * 119.89330 * 179.97438 * 22 21 19 24 24 C 1.38723 * 120.15334 * 359.74444 * 23 22 21 25 25 F 1.35099 * 119.86706 * 180.27161 * 24 23 22 26 26 C 1.38563 * 120.26084 * 0.51476 * 24 23 22 27 27 C 1.38030 * 120.10950 * 359.48614 * 26 24 23 28 28 Cl 1.73601 * 120.08146 * 180.27727 * 27 26 24 29 29 H 1.09003 * 109.47775 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46843 * 299.96651 * 1 2 3 31 31 H 1.09002 * 109.47248 * 59.95775 * 1 2 3 32 32 H 1.08998 * 109.47267 * 61.39901 * 4 2 1 33 33 H 1.08997 * 109.52473 * 301.33306 * 4 2 1 34 34 H 1.09001 * 109.58813 * 185.59138 * 5 4 2 35 35 H 1.09001 * 109.58525 * 65.16565 * 5 4 2 36 36 H 0.96998 * 120.00172 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.58970 * 186.60747 * 15 6 5 38 38 H 1.09003 * 109.58542 * 66.18190 * 15 6 5 39 39 H 0.97000 * 120.00181 * 24.93348 * 18 16 2 40 40 H 1.07999 * 120.05594 * 359.95795 * 22 21 19 41 41 H 1.07998 * 119.92414 * 179.97438 * 23 22 21 42 42 H 1.08007 * 119.94711 * 179.76202 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0404 -0.7204 1.2501 5 6 3.5720 -0.6889 1.2638 6 7 4.0679 -1.2496 -0.0005 7 6 4.9752 -2.2752 -0.0006 8 1 5.0079 -2.9674 0.8278 9 6 5.8529 -2.4253 -1.0655 10 7 6.0596 -1.4239 -1.8941 11 14 6.7407 -4.0486 -1.3224 12 1 6.3375 -5.0067 -0.2618 13 1 6.3825 -4.6037 -2.6524 14 1 8.2075 -3.8264 -1.2576 15 6 3.5713 -0.6894 -1.2647 16 6 2.0397 -0.7208 -1.2501 17 1 1.6972 -1.7555 -1.2387 18 7 1.5255 -0.0487 -2.4459 19 6 1.3982 -0.7318 -3.6007 20 8 1.7097 -1.9060 -3.6500 21 6 0.8794 -0.0545 -4.8058 22 6 0.5201 1.2944 -4.7521 23 6 0.0370 1.9217 -5.8798 24 6 -0.0883 1.2183 -7.0689 25 9 -0.5575 1.8406 -8.1724 26 6 0.2611 -0.1212 -7.1279 27 6 0.7462 -0.7604 -6.0048 28 17 1.1905 -2.4369 -6.0815 29 1 -0.3635 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3634 0.5145 -0.8896 32 1 1.6978 -1.7550 1.2386 33 1 1.6583 -0.2205 2.1401 34 1 3.9423 -1.2849 2.0980 35 1 3.9154 0.3404 1.3666 36 1 6.6732 -1.5287 -2.6380 37 1 3.9410 -1.2856 -2.0989 38 1 3.9147 0.3400 -1.3681 39 1 1.2766 0.8880 -2.4066 40 1 0.6206 1.8446 -3.8283 41 1 -0.2413 2.9644 -5.8388 42 1 0.1578 -0.6650 -8.0554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968609129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:03 Heat of formation + Delta-G solvation = -54.768071 kcal Electronic energy + Delta-G solvation = -27660.346250 eV Core-core repulsion = 23580.591740 eV Total energy + Delta-G solvation = -4079.754510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.10826 -41.42419 -39.89779 -38.74036 -37.48497 -36.08560 -34.73179 -32.88249 -32.35069 -31.89545 -30.17506 -28.93760 -25.96748 -25.19366 -24.25748 -23.43200 -22.62384 -21.57360 -20.96810 -19.29234 -18.77175 -18.47599 -17.85412 -16.96488 -16.82512 -16.59760 -16.20253 -15.96550 -15.74129 -15.47647 -15.25224 -14.97164 -14.89517 -14.59184 -14.42933 -14.10924 -14.00957 -13.94221 -13.50751 -13.24885 -13.03160 -12.77270 -12.56417 -12.49616 -12.44008 -12.31167 -12.24220 -12.11064 -11.88302 -11.60473 -11.35937 -11.17034 -10.60636 -10.54854 -10.21369 -10.10078 -9.81671 -8.68265 -7.89605 -5.34248 -0.55640 -0.10135 0.99266 1.38712 1.43900 1.51631 1.68824 2.10910 2.48369 2.54044 2.99856 3.26972 3.46802 3.57627 3.80546 3.80936 3.88105 3.96874 4.03827 4.18969 4.23306 4.50981 4.58514 4.63203 4.70365 4.74722 4.76269 4.88966 4.93407 4.95694 5.01704 5.15037 5.21486 5.24282 5.32922 5.47046 5.49439 5.51896 5.55854 5.63207 5.82352 6.36593 6.61609 7.12527 7.31651 7.86362 8.34295 9.14982 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.003875 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.897930 B = 7224.964922 C = 8745.826905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.116 4.116 5 C 0.136 3.864 6 N -0.610 5.610 7 C -0.262 4.262 8 H 0.067 0.933 9 C -0.046 4.046 10 N -0.928 5.928 11 Si 0.955 3.045 12 H -0.264 1.264 13 H -0.300 1.300 14 H -0.285 1.285 15 C 0.178 3.822 16 C 0.143 3.857 17 H 0.050 0.950 18 N -0.698 5.698 19 C 0.542 3.458 20 O -0.556 6.556 21 C -0.151 4.151 22 C -0.034 4.034 23 C -0.140 4.140 24 C 0.135 3.865 25 F -0.127 7.127 26 C -0.158 4.158 27 C 0.020 3.980 28 Cl -0.045 7.045 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.023 0.977 36 H 0.246 0.754 37 H 0.043 0.957 38 H 0.001 0.999 39 H 0.411 0.589 40 H 0.178 0.822 41 H 0.187 0.813 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.970 11.491 -5.705 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.393 4.393 8 H 0.084 0.916 9 C -0.242 4.242 10 N -0.574 5.574 11 Si 0.784 3.216 12 H -0.188 1.188 13 H -0.228 1.228 14 H -0.212 1.212 15 C 0.051 3.949 16 C 0.037 3.963 17 H 0.068 0.932 18 N -0.351 5.351 19 C 0.329 3.671 20 O -0.434 6.434 21 C -0.155 4.155 22 C -0.052 4.052 23 C -0.158 4.158 24 C 0.115 3.885 25 F -0.105 7.105 26 C -0.178 4.178 27 C -0.008 4.008 28 Cl -0.016 7.016 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.019 0.981 39 H 0.249 0.751 40 H 0.195 0.805 41 H 0.204 0.796 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.609 10.514 -5.858 21.329 hybrid contribution 1.037 -0.963 -0.785 1.619 sum -16.572 9.551 -6.644 20.248 Atomic orbital electron populations 1.21776 0.92893 1.01612 1.02964 1.21274 0.96966 0.99486 0.92657 0.89896 1.21968 0.95601 1.00208 0.97766 1.21179 0.93662 0.96178 0.87902 1.44249 1.48157 1.39774 1.01163 1.19506 1.09708 1.03942 1.06101 0.91576 1.25691 0.98579 1.00032 0.99913 1.70155 1.38463 1.30641 1.18177 0.85380 0.78031 0.80822 0.77358 1.18776 1.22755 1.21200 1.20805 0.89852 0.95036 0.89176 1.21488 0.94666 0.95927 0.84223 0.93194 1.45710 1.65286 1.14760 1.09302 1.18465 0.78312 0.86468 0.83870 1.90904 1.50238 1.17583 1.84696 1.19931 1.06551 0.96152 0.92895 1.21474 0.92698 0.90641 1.00412 1.21535 1.01256 1.03045 0.89971 1.17766 0.96716 0.90030 0.83943 1.91558 1.85508 1.82098 1.51378 1.21061 1.03182 0.94389 0.99154 1.20893 0.98602 0.87186 0.94132 1.98442 1.90556 1.14263 1.98330 0.94097 0.90374 0.91487 0.93342 0.88546 0.92843 0.95907 0.94470 0.93840 0.98128 0.75090 0.80472 0.79616 0.81944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.02 71.98 0.65 -2.13 16 2 C -0.08 -2.36 2.27 -10.77 -0.02 -2.38 16 3 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.12 -3.53 5.36 30.67 0.16 -3.36 16 5 C 0.14 5.41 6.52 86.36 0.56 5.98 16 6 N -0.61 -31.28 2.99 -699.09 -2.09 -33.37 16 7 C -0.26 -15.10 9.58 84.03 0.81 -14.29 16 8 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 9 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 10 N -0.93 -57.86 11.19 21.65 0.24 -57.62 16 11 Si 0.96 48.15 29.59 68.60 2.03 50.18 16 12 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.30 -15.61 7.11 99.48 0.71 -14.91 16 14 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 15 C 0.18 8.81 4.89 86.36 0.42 9.23 16 16 C 0.14 5.36 2.06 45.07 0.09 5.45 16 17 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 18 N -0.70 -20.97 4.32 -445.22 -1.92 -22.89 16 19 C 0.54 18.81 7.73 86.73 0.67 19.48 16 20 O -0.56 -25.18 13.63 -3.96 -0.05 -25.24 16 21 C -0.15 -3.96 5.88 -20.07 -0.12 -4.07 16 22 C -0.03 -0.53 9.53 22.52 0.21 -0.32 16 23 C -0.14 -1.77 10.01 22.28 0.22 -1.55 16 24 C 0.14 2.26 7.31 22.46 0.16 2.42 16 25 F -0.13 -2.09 17.26 44.97 0.78 -1.32 16 26 C -0.16 -3.23 9.79 22.30 0.22 -3.01 16 27 C 0.02 0.54 6.35 22.59 0.14 0.68 16 28 Cl -0.05 -1.50 26.02 -2.72 -0.07 -1.57 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.14 7.36 -2.39 -0.02 1.13 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.04 2.61 6.03 -2.39 -0.01 2.60 16 38 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.41 8.43 6.33 -92.71 -0.59 7.85 16 40 H 0.18 1.59 6.40 -2.91 -0.02 1.57 16 41 H 0.19 0.99 8.06 -2.91 -0.02 0.96 16 42 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -78.02 358.47 3.98 -74.04 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.47 Total: 7.98 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.61 Total: 9.80 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -3.77 Total: -113.88 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.57 kcal Total: -78.02 3.98 -74.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968609129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.268 kcal (2) G-P(sol) polarization free energy of solvation -78.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds