Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46316 * 2 1 4 4 C 1.53070 * 109.45760 * 119.81974 * 2 1 3 5 5 C 1.53188 * 109.30103 * 181.24374 * 4 2 1 6 6 N 1.46925 * 108.89010 * 305.57968 * 5 4 2 7 7 C 1.36943 * 120.62937 * 233.51110 * 6 5 4 8 8 H 1.07997 * 119.99795 * 27.68986 * 7 6 5 9 9 C 1.38810 * 119.99973 * 207.68455 * 7 6 5 10 10 N 1.31620 * 120.00304 * 17.36784 * 9 7 6 11 11 Si 1.86807 * 119.99906 * 197.36876 * 9 7 6 12 12 H 1.48498 * 109.46906 * 60.00365 * 11 9 7 13 13 H 1.48501 * 109.46786 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46618 * 300.00052 * 11 9 7 15 15 C 1.46932 * 118.74385 * 53.53567 * 6 5 4 16 16 C 1.53048 * 109.45969 * 240.03403 * 2 1 3 17 17 H 1.08993 * 109.52613 * 58.64183 * 16 2 1 18 18 N 1.46501 * 109.49238 * 298.56387 * 16 2 1 19 19 C 1.34772 * 119.99935 * 155.16523 * 18 16 2 20 20 O 1.21578 * 120.00093 * 359.97438 * 19 18 16 21 21 C 1.47646 * 120.00233 * 179.97438 * 19 18 16 22 22 C 1.39703 * 120.12671 * 359.97438 * 21 19 18 23 23 C 1.37774 * 119.88990 * 179.97438 * 22 21 19 24 24 C 1.38722 * 120.15968 * 0.02562 * 23 22 21 25 25 F 1.35098 * 119.87347 * 179.97438 * 24 23 22 26 26 C 1.38566 * 120.26202 * 359.97438 * 24 23 22 27 27 C 1.38038 * 120.10055 * 359.74298 * 26 24 23 28 28 Cl 1.73600 * 120.07668 * 180.25846 * 27 26 24 29 29 H 1.09000 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46588 * 299.97067 * 1 2 3 31 31 H 1.09003 * 109.47099 * 59.96649 * 1 2 3 32 32 H 1.09001 * 109.38737 * 61.36156 * 4 2 1 33 33 H 1.09004 * 109.61885 * 301.26119 * 4 2 1 34 34 H 1.09000 * 109.58937 * 185.71764 * 5 4 2 35 35 H 1.08996 * 109.58711 * 65.43284 * 5 4 2 36 36 H 0.96993 * 120.00122 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.58264 * 66.17347 * 15 6 5 38 38 H 1.08997 * 109.58616 * 186.60535 * 15 6 5 39 39 H 0.96998 * 119.99920 * 335.15714 * 18 16 2 40 40 H 1.07998 * 120.05587 * 359.95590 * 22 21 19 41 41 H 1.07995 * 119.92176 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.94816 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7177 1.2522 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2487 0.0000 7 6 4.9765 -2.2733 0.0000 8 1 5.0098 -2.9655 0.8284 9 6 5.8547 -2.4222 -1.0646 10 7 6.0604 -1.4204 -1.8932 11 14 6.7446 -4.0445 -1.3215 12 1 5.7497 -5.1283 -1.5229 13 1 7.6186 -3.9455 -2.5180 14 1 7.5734 -4.3487 -0.1275 15 6 3.5714 -0.6886 -1.2644 16 6 2.0399 -0.7208 -1.2502 17 1 1.6572 -0.2214 -2.1401 18 7 1.5801 -2.1117 -1.2342 19 6 1.4547 -2.7932 -2.3901 20 8 1.7226 -2.2537 -3.4461 21 6 0.9919 -4.1952 -2.3740 22 6 0.6838 -4.8181 -1.1621 23 6 0.2518 -6.1263 -1.1528 24 6 0.1228 -6.8261 -2.3436 25 9 -0.3007 -8.1089 -2.3277 26 6 0.4266 -6.2147 -3.5494 27 6 0.8548 -4.9025 -3.5717 28 17 1.2288 -4.1350 -5.0832 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5134 0.8903 31 1 -0.3633 0.5144 -0.8897 32 1 1.6958 -1.7519 1.2419 33 1 1.6594 -0.2161 2.1420 34 1 3.9418 -1.2843 2.0985 35 1 3.9164 0.3402 1.3684 36 1 6.6743 -1.5243 -2.6368 37 1 3.9143 0.3409 -1.3675 38 1 3.9417 -1.2846 -2.0984 39 1 1.3661 -2.5421 -0.3917 40 1 0.7843 -4.2751 -0.2340 41 1 0.0139 -6.6084 -0.2162 42 1 0.3240 -6.7641 -4.4734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968609130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -33.525275 kcal Electronic energy + Delta-G solvation = -28386.859507 eV Core-core repulsion = 24308.026154 eV Total energy + Delta-G solvation = -4078.833353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.19573 -40.13973 -38.70520 -37.22664 -36.31827 -34.16228 -32.95492 -31.34001 -31.00072 -30.78442 -28.95721 -27.30975 -24.29921 -23.78652 -23.20787 -22.13915 -21.11013 -20.62190 -18.75062 -18.28770 -17.52032 -16.81618 -16.54718 -15.90180 -15.23574 -15.05735 -14.94978 -14.59987 -14.30733 -14.04281 -13.81894 -13.68125 -13.57130 -13.31072 -13.17315 -12.92641 -12.63808 -12.53845 -11.95910 -11.62042 -11.55567 -11.38848 -11.34626 -11.16511 -10.93265 -10.90504 -10.71086 -10.53052 -10.24493 -9.92952 -9.69725 -9.51340 -9.20551 -9.14501 -8.85359 -8.45059 -8.34405 -6.65209 -5.76497 -3.19253 0.52478 0.85852 2.10040 2.85901 3.38622 3.45509 3.46608 3.54402 3.84198 3.95406 4.42297 4.50664 4.64247 4.82208 4.97959 5.17088 5.20555 5.24215 5.32680 5.41797 5.53122 5.57512 5.66371 5.84380 5.85444 5.88371 5.90809 5.98725 6.12276 6.27047 6.34185 6.41313 6.43221 6.52494 6.63458 6.72838 6.86224 6.97152 7.36448 7.67613 7.80813 8.03943 8.46996 8.72762 9.21937 9.86226 10.41560 11.31344 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.005093 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.382358 B = 5496.276777 C = 6487.627294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.256 4.256 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.160 3.840 16 C 0.127 3.873 17 H 0.078 0.922 18 N -0.691 5.691 19 C 0.551 3.449 20 O -0.518 6.518 21 C -0.125 4.125 22 C -0.044 4.044 23 C -0.158 4.158 24 C 0.128 3.872 25 F -0.132 7.132 26 C -0.160 4.160 27 C 0.038 3.962 28 Cl -0.016 7.016 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.255 0.745 37 H 0.025 0.975 38 H 0.098 0.902 39 H 0.392 0.608 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 -5.385 2.056 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.096 0.904 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.385 4.385 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.210 1.210 15 C 0.033 3.967 16 C 0.022 3.978 17 H 0.096 0.904 18 N -0.342 5.342 19 C 0.336 3.664 20 O -0.395 6.395 21 C -0.129 4.129 22 C -0.063 4.063 23 C -0.177 4.177 24 C 0.108 3.892 25 F -0.110 7.110 26 C -0.179 4.179 27 C 0.009 3.991 28 Cl 0.014 6.986 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.117 0.883 39 H 0.228 0.772 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.802 -4.924 1.015 15.632 hybrid contribution 0.477 -1.341 0.171 1.433 sum -14.325 -6.264 1.186 15.680 Atomic orbital electron populations 1.21850 0.95981 1.01303 1.01021 1.21326 0.94587 0.99983 0.95458 0.90362 1.22084 0.99295 0.99272 0.96132 1.20923 0.90649 0.96578 0.90316 1.43972 1.48248 1.39591 0.99114 1.19008 1.10161 1.03175 1.06168 0.91957 1.24979 0.97133 0.97076 0.99828 1.69978 1.37344 1.28960 1.17689 0.86492 0.79408 0.84282 0.77346 1.21065 1.21593 1.20965 1.21217 0.86612 0.97822 0.91033 1.21820 0.98981 0.80039 0.96982 0.90392 1.45721 1.66578 1.14125 1.07779 1.17755 0.78872 0.84940 0.84816 1.90858 1.49492 1.69095 1.30036 1.20084 1.04016 0.96450 0.92376 1.21172 0.94010 0.93831 0.97297 1.21135 1.03676 0.95239 0.97611 1.17637 0.98294 0.79265 0.94010 1.91528 1.87171 1.35009 1.97332 1.20935 1.04396 0.94205 0.98400 1.20718 0.97393 0.92191 0.88764 1.98437 1.91842 1.80667 1.27672 0.93125 0.93147 0.93038 0.92935 0.92714 0.92858 0.96456 0.93510 0.95681 0.88345 0.77203 0.83724 0.83603 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.05 37.16 0.34 -1.40 16 2 C -0.09 -1.39 2.47 -90.56 -0.22 -1.62 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.13 -1.90 5.21 -26.60 -0.14 -2.04 16 5 C 0.14 2.71 6.51 -3.71 -0.02 2.68 16 6 N -0.59 -13.72 2.92 -172.32 -0.50 -14.22 16 7 C -0.26 -6.74 9.59 -15.06 -0.14 -6.89 16 8 H 0.06 1.61 7.89 -52.49 -0.41 1.20 16 9 C 0.01 0.26 4.91 -17.43 -0.09 0.17 16 10 N -0.90 -26.23 11.19 55.49 0.62 -25.61 16 11 Si 0.89 22.04 29.59 -169.99 -5.03 17.01 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.16 3.71 4.91 -3.71 -0.02 3.69 16 16 C 0.13 2.31 2.24 -67.81 -0.15 2.16 16 17 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 18 N -0.69 -11.66 4.21 -54.69 -0.23 -11.89 16 19 C 0.55 10.10 7.73 -12.42 -0.10 10.01 16 20 O -0.52 -11.09 13.63 5.30 0.07 -11.02 16 21 C -0.13 -1.94 5.88 -104.94 -0.62 -2.55 16 22 C -0.04 -0.54 9.53 -39.20 -0.37 -0.91 16 23 C -0.16 -1.69 10.01 -39.57 -0.40 -2.09 16 24 C 0.13 1.49 7.31 -39.28 -0.29 1.21 16 25 F -0.13 -1.51 17.26 2.25 0.04 -1.47 16 26 C -0.16 -1.98 9.79 -39.53 -0.39 -2.37 16 27 C 0.04 0.57 6.35 -39.08 -0.25 0.32 16 28 Cl -0.02 -0.26 26.02 -51.86 -1.35 -1.61 16 29 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.75 6.41 -51.93 -0.33 0.41 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 2.72 6.04 -51.93 -0.31 2.41 16 39 H 0.39 5.77 4.67 -40.82 -0.19 5.58 16 40 H 0.15 1.47 6.40 -52.49 -0.34 1.13 16 41 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -30.87 355.34 -9.18 -40.05 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.30 Total: 3.02 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.86 Total: 0.37 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.11 Total: -51.71 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.35 Total: -1.61 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.87 -9.18 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968609130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.524 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds