Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 119.99929 * 2 1 4 4 H 1.08010 * 120.00029 * 160.57289 * 3 2 1 5 5 C 1.38810 * 120.00209 * 340.29980 * 3 2 1 6 6 N 1.31618 * 119.99547 * 347.08693 * 5 3 2 7 7 Si 1.86799 * 120.00238 * 167.09517 * 5 3 2 8 8 H 1.48497 * 109.47041 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47458 * 119.99917 * 7 5 3 10 10 H 1.48508 * 109.46841 * 239.99819 * 7 5 3 11 11 C 1.46502 * 119.99736 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.63637 * 179.30079 * 11 2 1 13 13 C 1.55163 * 110.71906 * 56.16330 * 11 2 1 14 14 C 1.54906 * 101.58101 * 206.13047 * 13 11 2 15 15 N 1.47431 * 104.83378 * 37.00867 * 14 13 11 16 16 C 1.34768 * 125.65091 * 155.90696 * 15 14 13 17 17 O 1.21286 * 120.00060 * 179.97438 * 16 15 14 18 18 C 1.50704 * 120.00097 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.47380 * 180.02562 * 18 16 15 20 20 C 1.38261 * 119.97833 * 89.99424 * 19 18 16 21 21 C 1.38216 * 120.05803 * 179.97438 * 20 19 18 22 22 C 1.38320 * 120.01362 * 0.04861 * 21 20 19 23 23 Cl 1.73602 * 120.02148 * 179.97438 * 22 21 20 24 24 C 1.38538 * 119.95257 * 359.97260 * 22 21 20 25 25 F 1.35098 * 120.03208 * 180.02562 * 24 22 21 26 26 C 1.38198 * 119.96887 * 269.72171 * 19 18 16 27 27 C 1.47322 * 108.73320 * 335.71167 * 15 14 13 28 28 H 1.08993 * 109.46950 * 84.81740 * 1 2 3 29 29 H 1.09005 * 109.47249 * 204.82019 * 1 2 3 30 30 H 1.09004 * 109.47190 * 324.81634 * 1 2 3 31 31 H 0.97007 * 120.00060 * 179.97438 * 6 5 3 32 32 H 1.08998 * 111.00405 * 324.20536 * 13 11 2 33 33 H 1.08999 * 111.00094 * 88.05511 * 13 11 2 34 34 H 1.08997 * 110.37183 * 155.84600 * 14 13 11 35 35 H 1.08999 * 110.36894 * 278.06059 * 14 13 11 36 36 H 1.09009 * 109.46782 * 300.00125 * 18 16 15 37 37 H 1.08996 * 109.46819 * 59.99881 * 18 16 15 38 38 H 1.08003 * 119.96976 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.99058 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.00765 * 0.02562 * 26 19 18 41 41 H 1.08996 * 110.06593 * 241.87183 * 27 15 14 42 42 H 1.09004 * 109.84793 * 120.60758 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1836 1.2125 0.3111 5 6 1.5166 2.3528 -0.4052 6 7 0.3568 2.2913 -1.0244 7 14 2.3107 4.0104 -0.0720 8 1 3.6018 3.8079 0.6330 9 1 2.5534 4.7108 -1.3588 10 1 1.4078 4.8304 0.7753 11 6 2.1974 -1.2688 0.0006 12 1 3.2729 -1.0915 -0.0120 13 6 1.7720 -2.1487 -1.2045 14 6 2.0755 -3.5717 -0.6730 15 7 1.7185 -3.5247 0.7567 16 6 1.3780 -4.5844 1.5165 17 8 1.1026 -4.4277 2.6873 18 6 1.3395 -5.9642 0.9116 19 6 0.9325 -6.9630 1.9640 20 6 -0.4043 -7.2605 2.1540 21 6 -0.7794 -8.1767 3.1184 22 6 0.1827 -8.7964 3.8954 23 17 -0.2882 -9.9468 5.1073 24 6 1.5223 -8.4984 3.7058 25 9 2.4633 -9.1031 4.4634 26 6 1.8963 -7.5852 2.7347 27 6 1.7999 -2.1283 1.2190 28 1 -0.3633 0.0928 -1.0234 29 1 -0.3634 -0.9328 0.4314 30 1 -0.3634 0.8399 0.5922 31 1 -0.0859 3.1068 -1.3073 32 1 0.7100 -2.0302 -1.4192 33 1 2.3745 -1.9236 -2.0845 34 1 1.4639 -4.3093 -1.1926 35 1 3.1335 -3.8043 -0.7940 36 1 0.6176 -5.9828 0.0950 37 1 2.3274 -6.2209 0.5292 38 1 -1.1561 -6.7764 1.5482 39 1 -1.8239 -8.4085 3.2657 40 1 2.9405 -7.3553 2.5829 41 1 2.5549 -2.0363 1.9998 42 1 0.8300 -1.8070 1.5986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972421296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -30.228067 kcal Electronic energy + Delta-G solvation = -26476.205206 eV Core-core repulsion = 22397.514830 eV Total energy + Delta-G solvation = -4078.690375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.21143 -40.27619 -39.18679 -37.49237 -36.82279 -34.85948 -33.01017 -31.65805 -31.02664 -29.85729 -28.66568 -27.18891 -26.09711 -23.77855 -23.32888 -22.39834 -22.06596 -19.41370 -19.13229 -17.74023 -17.15982 -17.07131 -16.99052 -16.70092 -16.01285 -15.95006 -15.27559 -14.89827 -14.47998 -14.18188 -14.02320 -13.64975 -13.54042 -13.33906 -13.23846 -12.90598 -12.58114 -12.49396 -12.38384 -12.03187 -11.81972 -11.72390 -11.65956 -11.45416 -11.23837 -11.00405 -10.83876 -10.64475 -10.49802 -10.28511 -9.95386 -9.90941 -9.79143 -9.28873 -8.89937 -8.62718 -8.42143 -6.90822 -5.80665 -3.25456 0.60263 0.78017 1.69129 2.69347 2.91311 3.30061 3.33789 3.41750 3.43271 3.74285 4.19220 4.31737 4.42341 4.59129 4.70448 4.80731 4.94001 4.99794 5.11045 5.22189 5.26246 5.33141 5.47380 5.48752 5.51560 5.60781 5.67684 5.72669 5.83361 5.93120 6.04918 6.23819 6.31871 6.35298 6.47176 6.57502 6.74157 6.79961 7.34153 7.63527 7.69572 7.74853 8.24245 8.29701 9.14238 9.76798 10.23655 11.24321 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027875 B = 0.001990 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.235381 B =14069.914905 C =14125.015986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.588 5.588 3 C -0.258 4.258 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.151 4.151 14 C 0.098 3.902 15 N -0.612 5.612 16 C 0.524 3.476 17 O -0.538 6.538 18 C -0.102 4.102 19 C -0.027 4.027 20 C -0.102 4.102 21 C -0.080 4.080 22 C -0.077 4.077 23 Cl -0.055 7.055 24 C 0.111 3.889 25 F -0.128 7.128 26 C -0.128 4.128 27 C 0.087 3.913 28 H 0.031 0.969 29 H -0.001 1.001 30 H 0.047 0.953 31 H 0.253 0.747 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.061 0.939 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 -23.330 2.251 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.309 5.309 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.192 4.192 14 C -0.026 4.026 15 N -0.346 5.346 16 C 0.312 3.688 17 O -0.416 6.416 18 C -0.142 4.142 19 C -0.027 4.027 20 C -0.121 4.121 21 C -0.099 4.099 22 C -0.104 4.104 23 Cl -0.026 7.026 24 C 0.091 3.909 25 F -0.106 7.106 26 C -0.147 4.147 27 C -0.037 4.037 28 H 0.049 0.951 29 H 0.018 0.982 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.079 0.921 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.159 -23.236 3.011 23.431 hybrid contribution 0.461 0.774 0.302 0.950 sum 0.302 -22.463 3.313 22.708 Atomic orbital electron populations 1.20810 0.82249 0.95650 0.99551 1.43916 1.02003 0.99908 1.85023 1.19291 0.96523 0.84731 1.38217 0.91019 1.24975 0.97558 0.98469 0.98628 1.70100 1.17018 1.26704 1.41349 0.86149 0.78621 0.84027 0.77510 1.20284 1.21720 1.21568 1.21293 0.96391 0.86006 0.90127 0.90322 1.23378 1.02912 0.92631 1.00236 1.22398 0.99836 0.99552 0.80765 1.48599 1.66922 1.07824 1.11273 1.19960 0.77583 0.85084 0.86184 1.90743 1.49063 1.85581 1.16188 1.20714 1.04957 0.90995 0.97507 1.19256 0.92974 0.94774 0.95727 1.21061 0.95685 0.97131 0.98176 1.20932 0.99204 0.95538 0.94200 1.20981 0.92810 0.99217 0.97402 1.98383 1.92069 1.58049 1.54111 1.17305 0.84362 0.96061 0.93199 1.91538 1.63590 1.81511 1.74005 1.20959 1.01320 0.96845 0.95599 1.22860 1.02299 0.79184 0.99366 0.95074 0.98208 0.93464 0.93715 0.90539 0.90284 0.91251 0.91472 0.87295 0.87501 0.84287 0.83842 0.83862 0.92060 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 7.54 59.85 0.45 4.27 16 2 N -0.59 -13.85 2.94 -171.38 -0.50 -14.36 16 3 C -0.26 -6.76 9.65 -15.06 -0.15 -6.91 16 4 H 0.07 1.83 7.82 -52.48 -0.41 1.42 16 5 C 0.00 0.05 5.11 -17.43 -0.09 -0.04 16 6 N -0.91 -25.51 10.51 55.49 0.58 -24.93 16 7 Si 0.91 21.26 29.57 -169.99 -5.03 16.23 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 C 0.17 3.20 3.43 -66.09 -0.23 2.97 16 12 H 0.08 1.44 7.91 -51.93 -0.41 1.03 16 13 C -0.15 -2.29 6.64 -24.58 -0.16 -2.45 16 14 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16 15 N -0.61 -8.72 3.33 -170.28 -0.57 -9.29 16 16 C 0.52 7.31 7.84 -10.99 -0.09 7.22 16 17 O -0.54 -9.78 16.36 5.55 0.09 -9.69 16 18 C -0.10 -0.91 4.84 -29.03 -0.14 -1.05 16 19 C -0.03 -0.26 4.37 -104.63 -0.46 -0.72 16 20 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 21 C -0.08 -0.72 9.83 -39.56 -0.39 -1.11 16 22 C -0.08 -0.80 6.33 -39.44 -0.25 -1.05 16 23 Cl -0.06 -0.55 28.62 -51.86 -1.48 -2.03 16 24 C 0.11 1.24 7.28 -39.39 -0.29 0.95 16 25 F -0.13 -1.52 16.84 2.25 0.04 -1.48 16 26 C -0.13 -1.32 9.68 -39.52 -0.38 -1.70 16 27 C 0.09 1.52 6.41 -2.90 -0.02 1.50 16 28 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 29 H 0.00 -0.01 6.45 -51.93 -0.34 -0.35 16 30 H 0.05 1.23 7.11 -51.93 -0.37 0.86 16 31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.08 1.28 7.19 -51.93 -0.37 0.90 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.60 7.48 -51.93 -0.39 0.22 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 0.73 7.79 -51.92 -0.40 0.32 16 37 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.45 6.30 -51.93 -0.33 1.13 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -31.41 365.30 -9.44 -40.85 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.50 Total: -2.48 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.58 Total: 1.66 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.49 Total: -48.57 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.41 -9.44 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972421296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.623 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds