Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00033 * 2 1 4 4 H 1.07999 * 119.99954 * 203.25686 * 3 2 1 5 5 C 1.38813 * 119.99963 * 23.26826 * 3 2 1 6 6 N 1.31622 * 119.99863 * 13.80991 * 5 3 2 7 7 Si 1.86800 * 119.99867 * 193.81407 * 5 3 2 8 8 H 1.48504 * 109.46939 * 90.00017 * 7 5 3 9 9 H 1.48505 * 109.46893 * 209.99586 * 7 5 3 10 10 H 1.48492 * 109.47256 * 329.99968 * 7 5 3 11 11 C 1.46506 * 119.99827 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.88342 * 183.88201 * 11 2 1 13 13 C 1.55156 * 111.03665 * 307.78067 * 11 2 1 14 14 C 1.54336 * 103.01848 * 153.39622 * 13 11 2 15 15 N 1.47017 * 107.26785 * 338.14255 * 14 13 11 16 16 C 1.34778 * 125.65265 * 178.85061 * 15 14 13 17 17 O 1.21273 * 120.00159 * 179.69471 * 16 15 14 18 18 C 1.50701 * 119.99449 * 359.69085 * 16 15 14 19 19 C 1.50699 * 109.46866 * 180.02562 * 18 16 15 20 20 C 1.38267 * 119.97132 * 269.72076 * 19 18 16 21 21 C 1.38215 * 120.06315 * 179.76519 * 20 19 18 22 22 C 1.38325 * 120.00941 * 0.51482 * 21 20 19 23 23 Cl 1.73598 * 120.02651 * 179.76521 * 22 21 20 24 24 C 1.38549 * 119.95279 * 359.73880 * 22 21 20 25 25 F 1.35101 * 120.03772 * 180.02562 * 24 22 21 26 26 C 1.38194 * 119.98267 * 89.99749 * 19 18 16 27 27 C 1.47430 * 108.70167 * 358.58524 * 15 14 13 28 28 H 1.09000 * 109.46785 * 275.15586 * 1 2 3 29 29 H 1.08996 * 109.46942 * 35.15368 * 1 2 3 30 30 H 1.09002 * 109.47045 * 155.15663 * 1 2 3 31 31 H 0.96996 * 119.99534 * 180.02562 * 6 5 3 32 32 H 1.08994 * 110.72440 * 271.95858 * 13 11 2 33 33 H 1.09003 * 110.71678 * 35.23072 * 13 11 2 34 34 H 1.09001 * 109.99123 * 218.66903 * 14 13 11 35 35 H 1.09001 * 109.77797 * 97.49949 * 14 13 11 36 36 H 1.09004 * 109.47107 * 300.00123 * 18 16 15 37 37 H 1.09000 * 109.47136 * 60.00058 * 18 16 15 38 38 H 1.07999 * 119.97243 * 0.02562 * 20 19 18 39 39 H 1.07998 * 119.99937 * 180.23506 * 21 20 19 40 40 H 1.08007 * 120.00058 * 0.02562 * 26 19 18 41 41 H 1.08996 * 110.36546 * 143.19597 * 27 15 14 42 42 H 1.09003 * 110.36360 * 265.51393 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3693 5 6 1.5403 2.3392 0.4749 6 7 0.4249 2.2562 1.1686 7 14 2.3033 4.0088 0.1293 8 1 1.7626 4.5459 -1.1453 9 1 1.9763 4.9415 1.2377 10 1 3.7774 3.8665 0.0207 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0973 0.0685 13 6 1.7076 -2.1952 1.1436 14 6 2.0204 -3.6075 0.6054 15 7 2.1185 -3.5051 -0.8579 16 6 2.4021 -4.5192 -1.6991 17 8 2.4519 -4.3198 -2.8943 18 6 2.6573 -5.9010 -1.1544 19 6 2.9493 -6.8438 -2.2932 20 6 1.9163 -7.5319 -2.9024 21 6 2.1813 -8.3934 -3.9502 22 6 3.4822 -8.5761 -4.3835 23 17 3.8163 -9.6627 -5.6955 24 6 4.5183 -7.8909 -3.7700 25 9 5.7895 -8.0676 -4.1921 26 6 4.2498 -7.0244 -2.7241 27 6 1.8489 -2.1106 -1.2533 28 1 -0.3633 0.0924 1.0235 29 1 -0.3633 0.8402 -0.5917 30 1 -0.3633 -0.9326 -0.4318 31 1 -0.0011 3.0621 1.5001 32 1 2.2603 -1.9989 2.0622 33 1 0.6361 -2.0762 1.3040 34 1 1.2193 -4.2953 0.8760 35 1 2.9672 -3.9577 1.0168 36 1 3.5118 -5.8728 -0.4782 37 1 1.7767 -6.2464 -0.6129 38 1 0.9008 -7.3929 -2.5621 39 1 1.3732 -8.9274 -4.4278 40 1 5.0568 -6.4902 -2.2445 41 1 2.4842 -1.8245 -2.0915 42 1 0.7977 -1.9866 -1.5133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972421297.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -49.554268 kcal Electronic energy + Delta-G solvation = -26413.853699 eV Core-core repulsion = 22334.325276 eV Total energy + Delta-G solvation = -4079.528422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.04576 -41.28344 -40.10468 -38.77155 -37.61694 -36.51990 -33.89792 -33.29761 -31.75706 -31.27891 -29.80421 -28.28898 -28.01631 -25.22933 -24.07620 -23.81345 -22.86041 -20.94084 -20.19979 -18.94620 -18.51581 -18.13430 -17.85758 -17.46388 -17.41036 -16.84048 -16.45665 -16.30109 -15.67815 -15.18996 -15.09489 -14.87313 -14.72199 -14.43694 -14.33055 -14.23425 -14.02288 -13.69532 -13.44831 -13.25680 -12.93536 -12.82148 -12.72483 -12.50843 -12.48903 -12.40079 -12.35569 -12.12296 -12.08036 -11.97842 -11.82844 -11.40391 -10.95585 -10.65248 -10.01531 -9.66188 -9.61549 -8.78261 -7.84453 -5.33472 -0.14640 0.06493 0.93870 1.46476 1.48784 1.56320 1.65848 1.94573 2.43986 2.52784 3.00169 3.27567 3.48029 3.57221 3.62762 3.69492 3.96891 4.04264 4.12885 4.16422 4.22849 4.37428 4.42427 4.49703 4.50282 4.66595 4.74851 4.79234 4.84474 4.92278 4.94057 5.01539 5.05410 5.23487 5.26332 5.33590 5.35282 5.46325 5.64268 5.65988 5.71787 6.31571 6.61974 7.13176 7.18341 7.84388 8.27645 9.17962 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025894 B = 0.002005 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.081686 B =13960.475897 C =14321.693392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.603 5.603 3 C -0.267 4.267 4 H 0.068 0.932 5 C -0.047 4.047 6 N -0.932 5.932 7 Si 0.965 3.035 8 H -0.290 1.290 9 H -0.293 1.293 10 H -0.269 1.269 11 C 0.164 3.836 12 H 0.071 0.929 13 C -0.143 4.143 14 C 0.108 3.892 15 N -0.613 5.613 16 C 0.523 3.477 17 O -0.588 6.588 18 C -0.090 4.090 19 C -0.037 4.037 20 C -0.101 4.101 21 C -0.081 4.081 22 C -0.088 4.088 23 Cl -0.057 7.057 24 C 0.087 3.913 25 F -0.139 7.139 26 C -0.135 4.135 27 C 0.098 3.902 28 H 0.014 0.986 29 H 0.009 0.991 30 H 0.030 0.970 31 H 0.249 0.751 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.152 0.848 41 H 0.048 0.952 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -25.566 -2.552 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.324 5.324 3 C -0.397 4.397 4 H 0.086 0.914 5 C -0.243 4.243 6 N -0.578 5.578 7 Si 0.794 3.206 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.194 1.194 11 C 0.055 3.945 12 H 0.089 0.911 13 C -0.183 4.183 14 C -0.014 4.014 15 N -0.347 5.347 16 C 0.313 3.687 17 O -0.468 6.468 18 C -0.129 4.129 19 C -0.038 4.038 20 C -0.119 4.119 21 C -0.100 4.100 22 C -0.115 4.115 23 Cl -0.029 7.029 24 C 0.067 3.933 25 F -0.118 7.118 26 C -0.154 4.154 27 C -0.028 4.028 28 H 0.032 0.968 29 H 0.028 0.972 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.170 0.830 41 H 0.066 0.934 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.197 -25.484 -3.274 25.892 hybrid contribution 0.528 1.429 -0.630 1.649 sum 3.725 -24.055 -3.905 24.653 Atomic orbital electron populations 1.20506 0.82638 0.95645 0.97955 1.43977 1.02058 1.00953 1.85416 1.19495 0.98713 0.86728 1.34765 0.91389 1.25721 0.98707 1.01630 0.98260 1.70202 1.21292 1.27701 1.38623 0.85296 0.78451 0.80099 0.76759 1.21689 1.21964 1.19390 1.21554 0.95704 0.84884 0.92348 0.91065 1.23058 1.02047 0.93969 0.99209 1.22259 1.03834 0.97571 0.77760 1.48559 1.68852 1.08339 1.08918 1.20849 0.75815 0.86619 0.85397 1.90727 1.53907 1.84835 1.17351 1.20774 1.07958 0.87492 0.96628 1.19474 0.92156 0.95473 0.96683 1.21418 1.00597 0.94987 0.94939 1.21237 0.94020 0.98278 0.96439 1.21202 0.95232 0.99429 0.95675 1.98377 1.95725 1.62203 1.46556 1.17586 0.78502 0.99952 0.97278 1.91504 1.36662 1.94300 1.89309 1.21176 0.99066 0.98490 0.96674 1.22579 0.99781 0.81462 0.98974 0.96786 0.97177 0.95115 0.94170 0.89854 0.91620 0.88285 0.88345 0.84574 0.83684 0.81881 0.81696 0.82994 0.93366 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.34 7.57 127.77 0.97 9.31 16 2 N -0.60 -28.64 2.96 -695.01 -2.06 -30.70 16 3 C -0.27 -14.23 9.60 84.03 0.81 -13.42 16 4 H 0.07 3.56 7.87 -2.91 -0.02 3.54 16 5 C -0.05 -2.59 5.08 84.86 0.43 -2.16 16 6 N -0.93 -53.40 10.77 21.65 0.23 -53.17 16 7 Si 0.97 44.34 29.58 68.60 2.03 46.37 16 8 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 C 0.16 6.04 3.53 46.38 0.16 6.21 16 12 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 13 C -0.14 -3.99 6.50 31.79 0.21 -3.78 16 14 C 0.11 1.97 6.49 86.73 0.56 2.53 16 15 N -0.61 -15.58 3.33 -811.78 -2.70 -18.28 16 16 C 0.52 12.86 7.84 87.66 0.69 13.55 16 17 O -0.59 -20.39 16.29 -3.01 -0.05 -20.44 16 18 C -0.09 -1.16 5.02 29.10 0.15 -1.01 16 19 C -0.04 -0.61 4.37 -19.87 -0.09 -0.70 16 20 C -0.10 -1.47 9.70 22.27 0.22 -1.26 16 21 C -0.08 -1.25 9.83 22.28 0.22 -1.04 16 22 C -0.09 -1.73 6.33 22.36 0.14 -1.59 16 23 Cl -0.06 -1.10 28.62 -2.72 -0.08 -1.18 16 24 C 0.09 1.88 7.28 22.39 0.16 2.04 16 25 F -0.14 -3.33 16.84 44.97 0.76 -2.57 16 26 C -0.14 -2.57 9.68 22.31 0.22 -2.35 16 27 C 0.10 3.35 6.47 86.85 0.56 3.91 16 28 H 0.01 0.71 7.33 -2.39 -0.02 0.69 16 29 H 0.01 0.50 7.38 -2.39 -0.02 0.48 16 30 H 0.03 1.23 6.38 -2.39 -0.02 1.22 16 31 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 33 H 0.07 2.00 7.00 -2.39 -0.02 1.99 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.14 1.05 8.08 -2.38 -0.02 1.03 16 37 H 0.15 0.89 8.08 -2.39 -0.02 0.87 16 38 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 42 H 0.05 2.00 6.43 -2.39 -0.02 1.98 16 Total: -1.00 -71.06 366.43 4.58 -66.48 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.04 Total: 3.23 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 5.40 Total: 10.25 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.52 Total: -102.14 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.76 Total: -2.57 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -71.06 4.58 -66.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972421297.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.928 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds