Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36943 * 120.00014 * 2 1 4 4 H 1.07998 * 120.00209 * 201.71912 * 3 2 1 5 5 C 1.38814 * 119.99990 * 21.72182 * 3 2 1 6 6 N 1.31625 * 119.99932 * 13.66725 * 5 3 2 7 7 Si 1.86797 * 120.00201 * 193.66244 * 5 3 2 8 8 H 1.48507 * 109.46837 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46909 * 119.99859 * 7 5 3 10 10 H 1.48495 * 109.47389 * 240.00084 * 7 5 3 11 11 C 1.46493 * 120.00007 * 180.02562 * 2 1 3 12 12 H 1.09003 * 110.64632 * 176.85572 * 11 2 1 13 13 C 1.55166 * 110.87118 * 53.60976 * 11 2 1 14 14 C 1.55132 * 101.48471 * 205.89754 * 13 11 2 15 15 N 1.47423 * 104.72106 * 37.29393 * 14 13 11 16 16 C 1.34785 * 125.64633 * 155.81486 * 15 14 13 17 17 O 1.21284 * 119.99744 * 179.69137 * 16 15 14 18 18 C 1.50700 * 119.99831 * 359.69507 * 16 15 14 19 19 C 1.50703 * 109.46867 * 179.97438 * 18 16 15 20 20 C 1.38234 * 120.00641 * 264.97660 * 19 18 16 21 21 C 1.38214 * 120.05121 * 180.02562 * 20 19 18 22 22 C 1.38255 * 120.06143 * 0.02562 * 21 20 19 23 23 C 1.38284 * 120.01227 * 359.70262 * 22 21 20 24 24 Cl 1.73596 * 120.02683 * 180.29770 * 23 22 21 25 25 C 1.38403 * 120.00715 * 84.99925 * 19 18 16 26 26 F 1.35107 * 120.02843 * 359.95181 * 25 19 18 27 27 C 1.47023 * 108.70547 * 335.55066 * 15 14 13 28 28 H 1.09000 * 109.46639 * 274.45910 * 1 2 3 29 29 H 1.09006 * 109.47103 * 34.45446 * 1 2 3 30 30 H 1.08995 * 109.46939 * 154.45353 * 1 2 3 31 31 H 0.96999 * 119.99873 * 179.97438 * 6 5 3 32 32 H 1.08995 * 111.00107 * 324.13968 * 13 11 2 33 33 H 1.09000 * 111.00156 * 87.95637 * 13 11 2 34 34 H 1.08998 * 110.49570 * 278.45482 * 14 13 11 35 35 H 1.08995 * 110.34262 * 156.05795 * 14 13 11 36 36 H 1.08999 * 109.46887 * 60.00057 * 18 16 15 37 37 H 1.09000 * 109.46715 * 299.99556 * 18 16 15 38 38 H 1.08001 * 119.97351 * 0.04829 * 20 19 18 39 39 H 1.08005 * 119.97359 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.99481 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.87926 * 120.70101 * 27 15 14 42 42 H 1.08993 * 109.88296 * 241.86547 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1722 1.2192 -0.3461 5 6 1.5296 2.3454 0.4449 6 7 0.3967 2.2718 1.1110 7 14 2.3028 4.0102 0.0985 8 1 3.5643 3.8214 -0.6620 9 1 1.3624 4.8360 -0.7009 10 1 2.5962 4.6966 1.3822 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0922 -0.0564 13 6 1.7290 -2.1770 -1.1681 14 6 2.0621 -3.5875 -0.6149 15 7 1.7543 -3.5076 0.8246 16 6 1.4461 -4.5504 1.6210 17 8 1.2154 -4.3674 2.7976 18 6 1.3882 -5.9437 1.0496 19 6 1.0259 -6.9191 2.1397 20 6 2.0206 -7.5958 2.8205 21 6 1.6892 -8.4909 3.8201 22 6 0.3625 -8.7115 4.1404 23 6 -0.6344 -8.0318 3.4648 24 17 -2.3000 -8.3028 3.8720 25 6 -0.3029 -7.1379 2.4591 26 9 -1.2758 -6.4766 1.7945 27 6 1.8456 -2.1030 1.2491 28 1 -0.3632 0.0799 1.0246 29 1 -0.3634 0.8474 -0.5814 30 1 -0.3633 -0.9272 -0.4432 31 1 -0.0364 3.0820 1.4223 32 1 0.6592 -2.0654 -1.3447 33 1 2.2964 -1.9705 -2.0756 34 1 3.1169 -3.8170 -0.7651 35 1 1.4370 -4.3402 -1.0952 36 1 2.3615 -6.2072 0.6355 37 1 0.6357 -5.9823 0.2620 38 1 3.0574 -7.4245 2.5714 39 1 2.4674 -9.0193 4.3510 40 1 0.1048 -9.4116 4.9214 41 1 0.8886 -1.7757 1.6557 42 1 2.6272 -1.9928 2.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972422166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -28.579355 kcal Electronic energy + Delta-G solvation = -26984.602852 eV Core-core repulsion = 22905.983970 eV Total energy + Delta-G solvation = -4078.618882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.10628 -40.10701 -39.15072 -37.44325 -36.76175 -34.80522 -33.15388 -31.64370 -30.70038 -29.78708 -28.69868 -27.20615 -26.04677 -23.72935 -23.10946 -22.42789 -22.11551 -19.34212 -19.05600 -17.90790 -17.15190 -17.04932 -16.95909 -16.39990 -15.87023 -15.77049 -15.02872 -14.90129 -14.78724 -14.15019 -13.77818 -13.58173 -13.43494 -13.31015 -13.21019 -12.91221 -12.58255 -12.42763 -12.16913 -11.97071 -11.80380 -11.71881 -11.68333 -11.52380 -11.17103 -10.94816 -10.82562 -10.57958 -10.46090 -10.28032 -9.90946 -9.83859 -9.74195 -9.09706 -8.93323 -8.59456 -8.32570 -6.84798 -5.77645 -3.24442 0.69775 0.76175 1.74874 2.79084 3.00002 3.33908 3.36510 3.42925 3.44781 3.84615 4.17542 4.44255 4.44757 4.65575 4.71939 4.78410 4.94847 4.97389 5.16307 5.23602 5.28759 5.38471 5.48336 5.55193 5.58594 5.66500 5.77568 5.82001 5.86694 5.97168 5.98021 6.31500 6.34910 6.38293 6.50822 6.65250 6.82097 6.85053 7.33482 7.70141 7.77079 7.78006 8.31539 8.36397 9.16699 9.79438 10.27805 11.26922 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.002391 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.302620 B =11708.326697 C =12194.872129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.099 3.901 15 N -0.612 5.612 16 C 0.525 3.475 17 O -0.537 6.537 18 C -0.099 4.099 19 C -0.085 4.085 20 C -0.074 4.074 21 C -0.117 4.117 22 C -0.086 4.086 23 C -0.074 4.074 24 Cl -0.052 7.052 25 C 0.126 3.874 26 F -0.122 7.122 27 C 0.087 3.913 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.002 0.998 31 H 0.253 0.747 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.072 0.928 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 -24.760 -0.370 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.024 4.024 15 N -0.346 5.346 16 C 0.312 3.688 17 O -0.414 6.414 18 C -0.139 4.139 19 C -0.086 4.086 20 C -0.093 4.093 21 C -0.136 4.136 22 C -0.105 4.105 23 C -0.101 4.101 24 Cl -0.023 7.023 25 C 0.106 3.894 26 F -0.101 7.101 27 C -0.038 4.038 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.091 0.909 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.037 -24.512 0.383 24.600 hybrid contribution -0.079 1.085 -0.120 1.095 sum 1.958 -23.427 0.263 23.510 Atomic orbital electron populations 1.20813 0.82369 0.95754 0.99533 1.43943 1.01942 0.99911 1.84800 1.19266 0.97862 0.84943 1.37005 0.91074 1.25050 0.97801 0.98637 0.98040 1.70100 1.18807 1.27098 1.38716 0.86157 0.78524 0.84106 0.77549 1.20265 1.21572 1.21693 1.21349 0.96365 0.85970 0.90082 0.90373 1.23385 1.02891 0.93164 0.99933 1.22400 1.00029 0.99271 0.80692 1.48557 1.68081 1.07912 1.10075 1.19941 0.77444 0.85289 0.86125 1.90734 1.49430 1.85236 1.16030 1.20606 1.05023 0.91180 0.97113 1.19354 0.90968 0.98813 0.99490 1.21020 0.99176 0.94597 0.94471 1.21119 0.95712 0.98894 0.97855 1.20964 0.91520 0.98895 0.99073 1.20949 0.87420 1.01945 0.99806 1.98387 1.15544 1.95502 1.92907 1.17201 0.85487 0.93649 0.93081 1.91549 1.61305 1.78677 1.78545 1.22958 1.02347 0.78438 1.00017 0.95153 0.93587 0.97929 0.93640 0.90307 0.90349 0.91452 0.91307 0.87214 0.87574 0.84376 0.84268 0.84044 0.90917 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 7.82 59.85 0.47 4.35 16 2 N -0.59 -14.16 2.93 -171.39 -0.50 -14.66 16 3 C -0.26 -6.96 9.63 -15.06 -0.14 -7.11 16 4 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 5 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 6 N -0.90 -26.18 10.68 55.49 0.59 -25.59 16 7 Si 0.91 21.51 29.57 -169.99 -5.03 16.48 16 8 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.17 3.33 3.43 -66.10 -0.23 3.11 16 12 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 13 C -0.15 -2.32 6.61 -24.46 -0.16 -2.48 16 14 C 0.10 1.21 6.70 -2.41 -0.02 1.19 16 15 N -0.61 -9.69 3.33 -170.38 -0.57 -10.25 16 16 C 0.52 8.35 7.84 -10.98 -0.09 8.27 16 17 O -0.54 -10.88 16.36 5.55 0.09 -10.79 16 18 C -0.10 -1.09 4.61 -29.03 -0.13 -1.22 16 19 C -0.08 -0.98 4.38 -104.56 -0.46 -1.44 16 20 C -0.07 -0.68 9.68 -39.59 -0.38 -1.06 16 21 C -0.12 -0.93 10.04 -39.58 -0.40 -1.32 16 22 C -0.09 -0.76 9.83 -39.56 -0.39 -1.15 16 23 C -0.07 -0.85 6.33 -39.44 -0.25 -1.10 16 24 Cl -0.05 -0.59 28.62 -51.86 -1.48 -2.07 16 25 C 0.13 1.65 7.22 -39.39 -0.28 1.36 16 26 F -0.12 -1.80 16.14 2.25 0.04 -1.76 16 27 C 0.09 1.68 6.51 -3.07 -0.02 1.66 16 28 H 0.03 0.82 7.33 -51.93 -0.38 0.44 16 29 H 0.05 1.20 7.23 -51.93 -0.38 0.82 16 30 H 0.00 0.05 6.04 -51.93 -0.31 -0.26 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.08 1.29 6.07 -51.93 -0.32 0.97 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 36 H 0.11 0.83 8.05 -51.93 -0.42 0.41 16 37 H 0.11 1.05 7.50 -51.93 -0.39 0.66 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.07 1.66 7.12 -51.93 -0.37 1.29 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -32.95 364.12 -9.39 -42.34 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.44 Total: -2.25 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.57 Total: 3.07 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.48 Total: -50.51 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.95 -9.39 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972422166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.764 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds