Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00214 * 2 1 4 4 H 1.07997 * 120.00048 * 159.55018 * 3 2 1 5 5 C 1.38810 * 119.99577 * 339.27200 * 3 2 1 6 6 N 1.31621 * 120.00624 * 345.40056 * 5 3 2 7 7 Si 1.86803 * 119.99690 * 165.39965 * 5 3 2 8 8 H 1.48506 * 109.47016 * 94.71872 * 7 5 3 9 9 H 1.48502 * 109.47380 * 214.71401 * 7 5 3 10 10 H 1.48496 * 109.47212 * 334.71970 * 7 5 3 11 11 C 1.46499 * 119.99739 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88781 * 180.69974 * 11 2 1 13 13 C 1.55155 * 111.00212 * 304.57558 * 11 2 1 14 14 C 1.54327 * 102.94289 * 153.58001 * 13 11 2 15 15 N 1.47017 * 107.26842 * 337.80559 * 14 13 11 16 16 C 1.34780 * 125.64544 * 178.90264 * 15 14 13 17 17 O 1.21284 * 119.99688 * 180.02562 * 16 15 14 18 18 C 1.50695 * 120.00324 * 0.02562 * 16 15 14 19 19 C 1.50697 * 109.47513 * 180.02562 * 18 16 15 20 20 C 1.38238 * 120.01072 * 99.99684 * 19 18 16 21 21 C 1.38213 * 120.05079 * 180.02562 * 20 19 18 22 22 C 1.38261 * 120.06509 * 0.02562 * 21 20 19 23 23 C 1.38282 * 120.00857 * 359.97438 * 22 21 20 24 24 Cl 1.73603 * 120.02485 * 179.97438 * 23 22 21 25 25 C 1.38404 * 120.00435 * 279.72788 * 19 18 16 26 26 F 1.35103 * 120.02953 * 359.97270 * 25 19 18 27 27 C 1.47467 * 108.72383 * 358.97856 * 15 14 13 28 28 H 1.08992 * 109.47273 * 84.84055 * 1 2 3 29 29 H 1.08998 * 109.47021 * 204.84363 * 1 2 3 30 30 H 1.09003 * 109.46676 * 324.83923 * 1 2 3 31 31 H 0.96996 * 120.00230 * 179.97438 * 6 5 3 32 32 H 1.09006 * 110.72742 * 271.94202 * 13 11 2 33 33 H 1.09005 * 110.72445 * 35.21872 * 13 11 2 34 34 H 1.09001 * 109.88410 * 97.22685 * 14 13 11 35 35 H 1.09004 * 109.87865 * 218.23823 * 14 13 11 36 36 H 1.09004 * 109.46938 * 300.00350 * 18 16 15 37 37 H 1.08997 * 109.47282 * 60.00090 * 18 16 15 38 38 H 1.08001 * 119.96862 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.97013 * 180.02562 * 21 20 19 40 40 H 1.07994 * 119.99892 * 179.97438 * 22 21 20 41 41 H 1.09003 * 110.34738 * 265.24960 * 27 15 14 42 42 H 1.08995 * 110.40652 * 142.91747 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1787 1.2153 0.3268 5 6 1.5231 2.3491 -0.4255 6 7 0.3897 2.2804 -1.0911 7 14 2.2883 4.0120 -0.0533 8 1 3.1125 4.4475 -1.2094 9 1 1.2141 5.0076 0.1917 10 1 3.1468 3.9029 1.1534 11 6 2.1975 -1.2688 -0.0006 12 1 3.2737 -1.0962 0.0119 13 6 1.7636 -2.1618 1.1917 14 6 2.0557 -3.5880 0.6795 15 7 2.0774 -3.5283 -0.7893 16 6 2.3216 -4.5659 -1.6141 17 8 2.3146 -4.4002 -2.8155 18 6 2.6034 -5.9319 -1.0435 19 6 2.8418 -6.9066 -2.1678 20 6 4.1326 -7.2568 -2.5173 21 6 4.3523 -8.1503 -3.5487 22 6 3.2815 -8.6950 -4.2330 23 6 1.9892 -8.3466 -3.8856 24 17 0.6444 -9.0298 -4.7450 25 6 1.7682 -7.4558 -2.8471 26 9 0.5061 -7.1188 -2.5024 27 6 1.7897 -2.1449 -1.2112 28 1 -0.3633 0.0924 -1.0234 29 1 -0.3633 -0.9325 0.4318 30 1 -0.3633 0.8402 0.5918 31 1 -0.0484 3.0933 -1.3881 32 1 2.3601 -1.9403 2.0768 33 1 0.7010 -2.0372 1.4004 34 1 3.0235 -3.9245 1.0512 35 1 1.2731 -4.2693 1.0135 36 1 3.4889 -5.8853 -0.4096 37 1 1.7497 -6.2616 -0.4514 38 1 4.9701 -6.8311 -1.9845 39 1 5.3613 -8.4232 -3.8204 40 1 3.4544 -9.3927 -5.0390 41 1 0.7272 -2.0268 -1.4241 42 1 2.3841 -1.8830 -2.0864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972422167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -29.289156 kcal Electronic energy + Delta-G solvation = -26899.310986 eV Core-core repulsion = 22820.661324 eV Total energy + Delta-G solvation = -4078.649661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.11162 -40.11634 -39.16195 -37.45304 -36.77395 -34.83174 -33.16563 -31.66028 -30.70923 -29.82268 -28.69439 -27.21191 -26.07405 -23.74740 -23.12105 -22.42983 -22.08245 -19.35671 -19.09018 -17.90789 -17.16504 -17.08396 -16.95033 -16.40225 -15.87456 -15.81478 -15.03266 -14.83264 -14.78269 -14.16459 -13.79395 -13.59017 -13.42615 -13.28832 -13.20205 -12.89092 -12.67087 -12.42089 -12.31703 -12.03978 -11.84004 -11.72561 -11.69755 -11.50582 -11.18273 -10.94180 -10.80999 -10.54473 -10.46891 -10.29994 -9.92888 -9.85225 -9.74475 -9.10934 -8.94057 -8.61940 -8.34432 -6.86077 -5.78596 -3.24031 0.68708 0.75457 1.73797 2.77323 2.98745 3.32792 3.35736 3.42631 3.44341 3.83861 4.16818 4.43337 4.44183 4.65359 4.71147 4.77959 4.94782 4.96353 5.15502 5.24547 5.28001 5.36646 5.46195 5.54514 5.60484 5.65856 5.77665 5.80980 5.86249 5.96851 5.97901 6.27319 6.36068 6.37371 6.50162 6.60420 6.76158 6.84284 7.32150 7.67347 7.76039 7.76733 8.29994 8.34411 9.15884 9.78792 10.26433 11.26104 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.002290 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.613500 B =12221.880324 C =12444.879446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.904 5.904 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.289 1.289 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.102 3.898 15 N -0.613 5.613 16 C 0.526 3.474 17 O -0.537 6.537 18 C -0.099 4.099 19 C -0.086 4.086 20 C -0.076 4.076 21 C -0.118 4.118 22 C -0.086 4.086 23 C -0.074 4.074 24 Cl -0.053 7.053 25 C 0.128 3.872 26 F -0.123 7.123 27 C 0.087 3.913 28 H 0.031 0.969 29 H 0.003 0.997 30 H 0.045 0.955 31 H 0.254 0.746 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.067 0.933 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -24.169 0.680 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.215 1.215 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.021 4.021 15 N -0.347 5.347 16 C 0.313 3.687 17 O -0.415 6.415 18 C -0.139 4.139 19 C -0.087 4.087 20 C -0.094 4.094 21 C -0.136 4.136 22 C -0.104 4.104 23 C -0.101 4.101 24 Cl -0.024 7.024 25 C 0.108 3.892 26 F -0.101 7.101 27 C -0.037 4.037 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.086 0.914 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.987 -23.987 -0.133 24.724 hybrid contribution -0.145 0.941 0.062 0.955 sum 5.842 -23.046 -0.071 23.775 Atomic orbital electron populations 1.20831 0.82325 0.95698 0.99691 1.43894 1.01961 0.99866 1.84784 1.19225 0.97225 0.84737 1.37858 0.91104 1.25014 0.97810 0.98562 0.98143 1.70091 1.18721 1.27054 1.38929 0.86220 0.78222 0.83860 0.78089 1.21449 1.21548 1.20430 1.21444 0.96358 0.85788 0.90169 0.90417 1.23208 1.02970 0.92832 1.00382 1.22052 1.00687 0.99326 0.80045 1.48529 1.69225 1.09880 1.07084 1.19923 0.77412 0.84947 0.86408 1.90734 1.51857 1.84342 1.14530 1.20603 1.05245 0.91458 0.96583 1.19362 0.92433 0.98384 0.98530 1.21039 0.95479 0.96185 0.96695 1.21122 0.99156 0.97441 0.95884 1.20965 0.89566 0.99901 1.00013 1.20953 0.90703 1.01191 0.97300 1.98386 1.44877 1.83450 1.75671 1.17191 0.79891 0.96716 0.95407 1.91544 1.36807 1.90794 1.90939 1.23152 1.01283 0.78736 1.00567 0.95027 0.97887 0.93623 0.93605 0.90488 0.90346 0.91797 0.91993 0.87183 0.87585 0.84312 0.84253 0.84045 0.91428 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.78 7.72 59.85 0.46 4.24 16 2 N -0.58 -14.05 2.96 -171.04 -0.51 -14.55 16 3 C -0.26 -6.95 9.63 -15.06 -0.15 -7.09 16 4 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 5 C 0.00 0.10 5.07 -17.43 -0.09 0.01 16 6 N -0.90 -26.00 10.67 55.49 0.59 -25.41 16 7 Si 0.91 21.44 29.58 -169.99 -5.03 16.42 16 8 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 C 0.17 3.35 3.54 -65.79 -0.23 3.12 16 12 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 13 C -0.15 -2.31 6.48 -24.90 -0.16 -2.47 16 14 C 0.10 1.26 6.49 -3.07 -0.02 1.24 16 15 N -0.61 -9.65 3.33 -170.49 -0.57 -10.21 16 16 C 0.53 8.28 7.84 -10.99 -0.09 8.20 16 17 O -0.54 -10.76 16.21 5.55 0.09 -10.67 16 18 C -0.10 -1.07 4.75 -29.04 -0.14 -1.21 16 19 C -0.09 -0.98 4.43 -104.56 -0.46 -1.44 16 20 C -0.08 -0.68 9.67 -39.59 -0.38 -1.06 16 21 C -0.12 -0.91 10.04 -39.58 -0.40 -1.31 16 22 C -0.09 -0.75 9.83 -39.56 -0.39 -1.14 16 23 C -0.07 -0.84 6.33 -39.43 -0.25 -1.09 16 24 Cl -0.05 -0.59 28.62 -51.86 -1.48 -2.07 16 25 C 0.13 1.65 7.11 -39.39 -0.28 1.37 16 26 F -0.12 -1.78 16.23 2.25 0.04 -1.75 16 27 C 0.09 1.67 6.49 -2.51 -0.02 1.66 16 28 H 0.03 0.83 7.39 -51.93 -0.38 0.45 16 29 H 0.00 0.06 6.17 -51.93 -0.32 -0.26 16 30 H 0.05 1.17 7.23 -51.93 -0.38 0.79 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 0.84 8.00 -51.93 -0.42 0.42 16 37 H 0.11 1.01 7.94 -51.93 -0.41 0.60 16 38 H 0.14 0.90 8.04 -52.49 -0.42 0.48 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.07 1.42 7.20 -51.93 -0.37 1.05 16 42 H 0.07 1.54 8.04 -51.93 -0.42 1.13 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -32.61 365.12 -9.47 -42.07 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.51 Total: -2.36 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.59 Total: 3.03 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.48 Total: -50.17 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.61 -9.47 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972422167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.785 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds