Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00214 * 2 1 4 4 H 1.07997 * 120.00048 * 159.55018 * 3 2 1 5 5 C 1.38810 * 119.99577 * 339.27200 * 3 2 1 6 6 N 1.31621 * 120.00624 * 345.40056 * 5 3 2 7 7 Si 1.86803 * 119.99690 * 165.39965 * 5 3 2 8 8 H 1.48506 * 109.47016 * 94.71872 * 7 5 3 9 9 H 1.48502 * 109.47380 * 214.71401 * 7 5 3 10 10 H 1.48496 * 109.47212 * 334.71970 * 7 5 3 11 11 C 1.46499 * 119.99739 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88781 * 180.69974 * 11 2 1 13 13 C 1.55155 * 111.00212 * 304.57558 * 11 2 1 14 14 C 1.54327 * 102.94289 * 153.58001 * 13 11 2 15 15 N 1.47017 * 107.26842 * 337.80559 * 14 13 11 16 16 C 1.34780 * 125.64544 * 178.90264 * 15 14 13 17 17 O 1.21284 * 119.99688 * 180.02562 * 16 15 14 18 18 C 1.50695 * 120.00324 * 0.02562 * 16 15 14 19 19 C 1.50697 * 109.47513 * 180.02562 * 18 16 15 20 20 C 1.38238 * 120.01072 * 99.99684 * 19 18 16 21 21 C 1.38213 * 120.05079 * 180.02562 * 20 19 18 22 22 C 1.38261 * 120.06509 * 0.02562 * 21 20 19 23 23 C 1.38282 * 120.00857 * 359.97438 * 22 21 20 24 24 Cl 1.73603 * 120.02485 * 179.97438 * 23 22 21 25 25 C 1.38404 * 120.00435 * 279.72788 * 19 18 16 26 26 F 1.35103 * 120.02953 * 359.97270 * 25 19 18 27 27 C 1.47467 * 108.72383 * 358.97856 * 15 14 13 28 28 H 1.08992 * 109.47273 * 84.84055 * 1 2 3 29 29 H 1.08998 * 109.47021 * 204.84363 * 1 2 3 30 30 H 1.09003 * 109.46676 * 324.83923 * 1 2 3 31 31 H 0.96996 * 120.00230 * 179.97438 * 6 5 3 32 32 H 1.09006 * 110.72742 * 271.94202 * 13 11 2 33 33 H 1.09005 * 110.72445 * 35.21872 * 13 11 2 34 34 H 1.09001 * 109.88410 * 97.22685 * 14 13 11 35 35 H 1.09004 * 109.87865 * 218.23823 * 14 13 11 36 36 H 1.09004 * 109.46938 * 300.00350 * 18 16 15 37 37 H 1.08997 * 109.47282 * 60.00090 * 18 16 15 38 38 H 1.08001 * 119.96862 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.97013 * 180.02562 * 21 20 19 40 40 H 1.07994 * 119.99892 * 179.97438 * 22 21 20 41 41 H 1.09003 * 110.34738 * 265.24960 * 27 15 14 42 42 H 1.08995 * 110.40652 * 142.91747 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1787 1.2153 0.3268 5 6 1.5231 2.3491 -0.4255 6 7 0.3897 2.2804 -1.0911 7 14 2.2883 4.0120 -0.0533 8 1 3.1125 4.4475 -1.2094 9 1 1.2141 5.0076 0.1917 10 1 3.1468 3.9029 1.1534 11 6 2.1975 -1.2688 -0.0006 12 1 3.2737 -1.0962 0.0119 13 6 1.7636 -2.1618 1.1917 14 6 2.0557 -3.5880 0.6795 15 7 2.0774 -3.5283 -0.7893 16 6 2.3216 -4.5659 -1.6141 17 8 2.3146 -4.4002 -2.8155 18 6 2.6034 -5.9319 -1.0435 19 6 2.8418 -6.9066 -2.1678 20 6 4.1326 -7.2568 -2.5173 21 6 4.3523 -8.1503 -3.5487 22 6 3.2815 -8.6950 -4.2330 23 6 1.9892 -8.3466 -3.8856 24 17 0.6444 -9.0298 -4.7450 25 6 1.7682 -7.4558 -2.8471 26 9 0.5061 -7.1188 -2.5024 27 6 1.7897 -2.1449 -1.2112 28 1 -0.3633 0.0924 -1.0234 29 1 -0.3633 -0.9325 0.4318 30 1 -0.3633 0.8402 0.5918 31 1 -0.0484 3.0933 -1.3881 32 1 2.3601 -1.9403 2.0768 33 1 0.7010 -2.0372 1.4004 34 1 3.0235 -3.9245 1.0512 35 1 1.2731 -4.2693 1.0135 36 1 3.4889 -5.8853 -0.4096 37 1 1.7497 -6.2616 -0.4514 38 1 4.9701 -6.8311 -1.9845 39 1 5.3613 -8.4232 -3.8204 40 1 3.4544 -9.3927 -5.0390 41 1 0.7272 -2.0268 -1.4241 42 1 2.3841 -1.8830 -2.0864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972422167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -48.240121 kcal Electronic energy + Delta-G solvation = -26900.132761 eV Core-core repulsion = 22820.661324 eV Total energy + Delta-G solvation = -4079.471437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.06126 -41.24860 -40.06684 -38.83627 -37.61011 -36.55606 -34.07510 -33.37348 -31.42822 -31.30060 -29.89280 -28.38101 -28.05628 -25.25770 -23.90910 -23.84260 -22.95638 -20.95721 -20.24272 -18.96650 -18.73416 -18.23553 -17.91546 -17.45040 -17.17949 -16.81233 -16.46590 -16.20761 -15.65091 -15.47199 -15.10649 -14.83934 -14.53974 -14.45774 -14.33306 -14.20008 -14.05732 -13.79900 -13.44868 -13.30706 -13.11862 -12.77351 -12.70737 -12.49588 -12.48220 -12.42712 -12.41158 -12.16080 -12.05271 -11.97717 -11.80273 -11.39471 -11.03139 -10.64619 -9.88003 -9.71547 -9.66395 -8.83554 -7.84720 -5.32391 -0.03765 0.00663 0.94688 1.47461 1.48155 1.58322 1.59301 1.93757 2.45849 2.52980 3.07188 3.27420 3.38061 3.53960 3.63726 3.79906 3.93656 4.00074 4.11348 4.17509 4.21234 4.28968 4.37034 4.46062 4.47958 4.65046 4.73017 4.78307 4.87660 4.90922 4.94442 5.03492 5.16671 5.19793 5.23437 5.28921 5.32497 5.43752 5.63243 5.70004 5.71008 6.29230 6.56805 7.10513 7.13265 7.83291 8.26643 9.18623 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.002290 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.613500 B =12221.880324 C =12444.879446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.265 4.265 4 H 0.079 0.921 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.290 1.290 9 H -0.295 1.295 10 H -0.264 1.264 11 C 0.166 3.834 12 H 0.078 0.922 13 C -0.141 4.141 14 C 0.104 3.896 15 N -0.614 5.614 16 C 0.520 3.480 17 O -0.590 6.590 18 C -0.087 4.087 19 C -0.104 4.104 20 C -0.075 4.075 21 C -0.108 4.108 22 C -0.085 4.085 23 C -0.093 4.093 24 Cl -0.063 7.063 25 C 0.092 3.908 26 F -0.143 7.143 27 C 0.097 3.903 28 H -0.005 1.005 29 H 0.036 0.964 30 H 0.020 0.980 31 H 0.248 0.752 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.121 0.879 38 H 0.169 0.831 39 H 0.178 0.822 40 H 0.165 0.835 41 H 0.040 0.960 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 -26.344 2.714 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.323 5.323 3 C -0.394 4.394 4 H 0.097 0.903 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.217 1.217 9 H -0.221 1.221 10 H -0.188 1.188 11 C 0.057 3.943 12 H 0.096 0.904 13 C -0.180 4.180 14 C -0.017 4.017 15 N -0.347 5.347 16 C 0.310 3.690 17 O -0.471 6.471 18 C -0.126 4.126 19 C -0.105 4.105 20 C -0.093 4.093 21 C -0.126 4.126 22 C -0.104 4.104 23 C -0.120 4.120 24 Cl -0.034 7.034 25 C 0.072 3.928 26 F -0.122 7.122 27 C -0.028 4.028 28 H 0.014 0.986 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.171 0.829 37 H 0.139 0.861 38 H 0.187 0.813 39 H 0.195 0.805 40 H 0.183 0.817 41 H 0.059 0.941 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.920 -26.218 1.953 27.763 hybrid contribution -0.969 1.516 -0.630 1.906 sum 7.952 -24.702 1.323 25.984 Atomic orbital electron populations 1.20498 0.82751 0.96204 0.97267 1.44092 1.02051 1.01049 1.85072 1.19629 0.97544 0.85867 1.36408 0.90341 1.25823 0.98581 1.02028 0.98673 1.70275 1.20369 1.27306 1.40727 0.85197 0.77221 0.79532 0.78109 1.21677 1.22148 1.18809 1.21632 0.95950 0.84580 0.92141 0.90397 1.23076 1.02682 0.93260 0.99007 1.22307 1.04090 0.97965 0.77362 1.48593 1.69037 1.08212 1.08860 1.20898 0.75942 0.86410 0.85775 1.90709 1.54020 1.85313 1.17054 1.20650 1.07694 0.87475 0.96782 1.19605 0.93033 0.98813 0.99067 1.21492 0.95239 0.95788 0.96795 1.21614 1.00497 0.95922 0.94563 1.21365 0.88723 0.99868 1.00414 1.21231 0.91545 1.01762 0.97503 1.98374 1.45674 1.83535 1.75791 1.17642 0.79694 0.98432 0.97013 1.91478 1.38195 1.91230 1.91297 1.22670 0.98915 0.81733 0.99518 0.98648 0.94588 0.96111 0.94327 0.88221 0.91249 0.87619 0.89160 0.82919 0.86126 0.81322 0.80505 0.81729 0.94126 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.73 7.72 127.77 0.99 9.72 16 2 N -0.60 -29.28 2.96 -695.05 -2.06 -31.34 16 3 C -0.26 -14.19 9.63 84.03 0.81 -13.38 16 4 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 5 C -0.06 -3.13 5.07 84.86 0.43 -2.70 16 6 N -0.94 -56.26 10.67 21.65 0.23 -56.03 16 7 Si 0.97 44.73 29.58 68.60 2.03 46.76 16 8 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 C 0.17 6.31 3.54 46.38 0.16 6.47 16 12 H 0.08 2.94 7.93 -2.39 -0.02 2.92 16 13 C -0.14 -3.80 6.48 31.78 0.21 -3.60 16 14 C 0.10 2.12 6.49 86.73 0.56 2.68 16 15 N -0.61 -18.31 3.33 -811.70 -2.70 -21.01 16 16 C 0.52 15.68 7.84 87.65 0.69 16.37 16 17 O -0.59 -24.02 16.21 -3.04 -0.05 -24.07 16 18 C -0.09 -1.60 4.75 29.10 0.14 -1.46 16 19 C -0.10 -2.14 4.43 -19.83 -0.09 -2.23 16 20 C -0.08 -1.07 9.67 22.26 0.22 -0.86 16 21 C -0.11 -1.27 10.04 22.27 0.22 -1.05 16 22 C -0.09 -1.30 9.83 22.29 0.22 -1.08 16 23 C -0.09 -2.06 6.33 22.37 0.14 -1.92 16 24 Cl -0.06 -1.40 28.62 -2.72 -0.08 -1.48 16 25 C 0.09 2.34 7.11 22.39 0.16 2.50 16 26 F -0.14 -4.28 16.23 44.97 0.73 -3.55 16 27 C 0.10 3.84 6.49 86.84 0.56 4.41 16 28 H 0.00 -0.27 7.39 -2.39 -0.02 -0.29 16 29 H 0.04 1.49 6.17 -2.39 -0.01 1.47 16 30 H 0.02 1.08 7.23 -2.39 -0.02 1.07 16 31 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.07 2.02 6.17 -2.38 -0.01 2.01 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.15 1.46 8.00 -2.38 -0.02 1.44 16 37 H 0.12 1.89 7.94 -2.39 -0.02 1.87 16 38 H 0.17 1.32 8.04 -2.91 -0.02 1.30 16 39 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.04 1.80 7.20 -2.39 -0.02 1.78 16 42 H 0.04 1.79 8.04 -2.39 -0.02 1.77 16 Total: -1.00 -77.33 365.12 4.56 -72.76 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 1.04 Total: 4.08 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.42 Total: 13.89 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.53 Total: -108.37 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.05 Total: -24.07 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.73 Total: -3.55 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -77.33 4.56 -72.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972422167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.522 kcal (2) G-P(sol) polarization free energy of solvation -77.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds