Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36948 * 119.99919 * 2 1 4 4 H 1.07999 * 119.99727 * 160.70352 * 3 2 1 5 5 C 1.38806 * 119.99937 * 340.43832 * 3 2 1 6 6 N 1.31626 * 120.00054 * 347.09350 * 5 3 2 7 7 Si 1.86803 * 120.00029 * 167.10019 * 5 3 2 8 8 H 1.48497 * 109.47111 * 89.99720 * 7 5 3 9 9 H 1.48504 * 109.46951 * 209.99494 * 7 5 3 10 10 H 1.48503 * 109.46975 * 329.99542 * 7 5 3 11 11 C 1.46497 * 120.00395 * 180.02562 * 2 1 3 12 12 H 1.09003 * 110.89134 * 180.69393 * 11 2 1 13 13 C 1.55160 * 111.00196 * 304.57783 * 11 2 1 14 14 C 1.54319 * 102.94188 * 153.57405 * 13 11 2 15 15 N 1.47022 * 107.27343 * 337.81048 * 14 13 11 16 16 C 1.34777 * 125.65172 * 178.99981 * 15 14 13 17 17 O 1.21275 * 120.00555 * 179.97438 * 16 15 14 18 18 C 1.50705 * 119.99839 * 359.96662 * 16 15 14 19 19 C 1.50700 * 109.47224 * 180.02562 * 18 16 15 20 20 C 1.38451 * 120.02416 * 269.73049 * 19 18 16 21 21 F 1.35109 * 120.01666 * 359.97438 * 20 19 18 22 22 C 1.38443 * 119.96543 * 179.72147 * 20 19 18 23 23 C 1.38229 * 119.99557 * 0.53186 * 22 20 19 24 24 C 1.38194 * 120.04040 * 359.75985 * 23 22 20 25 25 C 1.38295 * 120.01636 * 90.00213 * 19 18 16 26 26 Cl 1.73609 * 119.99944 * 0.02582 * 25 19 18 27 27 C 1.47470 * 108.72301 * 358.97250 * 15 14 13 28 28 H 1.08995 * 109.47505 * 84.82045 * 1 2 3 29 29 H 1.09006 * 109.47086 * 204.82221 * 1 2 3 30 30 H 1.09004 * 109.47038 * 324.81998 * 1 2 3 31 31 H 0.96992 * 119.99914 * 179.97438 * 6 5 3 32 32 H 1.08999 * 110.71669 * 271.93766 * 13 11 2 33 33 H 1.09002 * 110.71948 * 35.21418 * 13 11 2 34 34 H 1.09005 * 109.88435 * 97.22546 * 14 13 11 35 35 H 1.09003 * 109.88401 * 218.23370 * 14 13 11 36 36 H 1.08993 * 109.47313 * 300.00543 * 18 16 15 37 37 H 1.09004 * 109.46642 * 60.00205 * 18 16 15 38 38 H 1.07998 * 120.00413 * 180.27361 * 22 20 19 39 39 H 1.08007 * 119.97730 * 179.74832 * 23 22 20 40 40 H 1.08003 * 119.98157 * 179.97438 * 24 23 22 41 41 H 1.09003 * 110.34708 * 265.25600 * 27 15 14 42 42 H 1.08998 * 110.40693 * 142.91702 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1841 1.2123 0.3091 5 6 1.5157 2.3534 -0.4025 6 7 0.3544 2.2927 -1.0193 7 14 2.3106 4.0106 -0.0690 8 1 3.1798 4.3821 -1.2142 9 1 1.2545 5.0401 0.1051 10 1 3.1292 3.9272 1.1672 11 6 2.1975 -1.2687 -0.0006 12 1 3.2737 -1.0961 0.0118 13 6 1.7637 -2.1618 1.1917 14 6 2.0558 -3.5879 0.6794 15 7 2.0776 -3.5282 -0.7894 16 6 2.3200 -4.5661 -1.6143 17 8 2.3124 -4.4007 -2.8157 18 6 2.6008 -5.9324 -1.0437 19 6 2.8373 -6.9075 -2.1682 20 6 1.7753 -7.6122 -2.7089 21 9 0.5263 -7.4264 -2.2284 22 6 1.9931 -8.5034 -3.7457 23 6 3.2719 -8.6974 -4.2331 24 6 4.3329 -7.9985 -3.6894 25 6 4.1162 -7.1031 -2.6568 26 17 5.4498 -6.2258 -1.9743 27 6 1.7897 -2.1448 -1.2113 28 1 -0.3634 0.0928 -1.0234 29 1 -0.3633 -0.9328 0.4314 30 1 -0.3633 0.8400 0.5921 31 1 -0.0887 3.1084 -1.3002 32 1 2.3602 -1.9402 2.0766 33 1 0.7011 -2.0372 1.4003 34 1 3.0237 -3.9244 1.0511 35 1 1.2733 -4.2694 1.0135 36 1 3.4868 -5.8867 -0.4106 37 1 1.7472 -6.2610 -0.4509 38 1 1.1644 -9.0501 -4.1710 39 1 3.4421 -9.3957 -5.0393 40 1 5.3318 -8.1511 -4.0706 41 1 0.7272 -2.0268 -1.4242 42 1 2.3842 -1.8828 -2.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972791232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -46.757314 kcal Electronic energy + Delta-G solvation = -27133.196908 eV Core-core repulsion = 23053.789770 eV Total energy + Delta-G solvation = -4079.407137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.04872 -41.30169 -40.12048 -38.83223 -37.51962 -36.57824 -34.19376 -33.40125 -31.45613 -31.31564 -29.91191 -28.38530 -28.06615 -25.26232 -23.94953 -23.87631 -22.95841 -20.97403 -20.28141 -18.98426 -18.79201 -18.28978 -17.99762 -17.47857 -17.02941 -16.72010 -16.45761 -16.15061 -15.79796 -15.66935 -15.10199 -14.91140 -14.62211 -14.49200 -14.40546 -14.19831 -14.13808 -13.76658 -13.48460 -13.30908 -13.12516 -12.77298 -12.70465 -12.52594 -12.45750 -12.41376 -12.39410 -12.17227 -12.06942 -11.92929 -11.80722 -11.42056 -11.08031 -10.65019 -9.89612 -9.74938 -9.69658 -8.85151 -7.84766 -5.31863 -0.06319 -0.01003 0.97815 1.47263 1.47414 1.54583 1.57435 1.90116 2.42613 2.51588 3.18487 3.27077 3.34281 3.51599 3.59349 3.65599 3.87164 3.91088 4.08334 4.17483 4.20030 4.31366 4.31603 4.37891 4.43951 4.49112 4.68630 4.77713 4.82844 4.85997 4.99179 5.02622 5.07184 5.18865 5.19339 5.21327 5.30854 5.42769 5.61849 5.69382 5.71958 6.28606 6.51703 7.06726 7.12202 7.82926 8.25511 9.18519 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.002627 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.820981 B =10654.143237 C =11119.972159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.288 1.288 9 H -0.294 1.294 10 H -0.266 1.266 11 C 0.166 3.834 12 H 0.075 0.925 13 C -0.139 4.139 14 C 0.103 3.897 15 N -0.614 5.614 16 C 0.526 3.474 17 O -0.583 6.583 18 C -0.094 4.094 19 C -0.112 4.112 20 C 0.098 3.902 21 F -0.142 7.142 22 C -0.149 4.149 23 C -0.069 4.069 24 C -0.121 4.121 25 C -0.014 4.014 26 Cl -0.059 7.059 27 C 0.099 3.901 28 H -0.005 1.005 29 H 0.035 0.965 30 H 0.023 0.977 31 H 0.248 0.752 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.163 0.837 41 H 0.046 0.954 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 -27.006 0.931 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.323 5.323 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.215 1.215 9 H -0.220 1.220 10 H -0.191 1.191 11 C 0.057 3.943 12 H 0.093 0.907 13 C -0.178 4.178 14 C -0.019 4.019 15 N -0.347 5.347 16 C 0.316 3.684 17 O -0.463 6.463 18 C -0.133 4.133 19 C -0.115 4.115 20 C 0.079 3.921 21 F -0.121 7.121 22 C -0.168 4.168 23 C -0.087 4.087 24 C -0.139 4.139 25 C -0.041 4.041 26 Cl -0.030 7.030 27 C -0.027 4.027 28 H 0.014 0.986 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.182 0.818 39 H 0.199 0.801 40 H 0.181 0.819 41 H 0.064 0.936 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.141 -26.733 0.322 27.673 hybrid contribution -0.237 1.726 -0.144 1.748 sum 6.904 -25.008 0.178 25.944 Atomic orbital electron populations 1.20513 0.82501 0.96210 0.97310 1.44085 1.02162 1.00898 1.85151 1.19632 0.96852 0.85778 1.37239 0.90486 1.25794 0.98321 1.01881 0.99004 1.70277 1.18392 1.27105 1.42938 0.85204 0.77212 0.79456 0.78137 1.21541 1.22026 1.19056 1.21608 0.95827 0.84689 0.92184 0.90723 1.23065 1.02856 0.92942 0.98988 1.22295 1.03721 0.98293 0.77563 1.48561 1.69117 1.08298 1.08748 1.20601 0.75960 0.86023 0.85825 1.90684 1.53777 1.85213 1.16663 1.20620 1.06917 0.88701 0.97109 1.19256 0.92190 0.99521 1.00492 1.17636 0.78647 0.99118 0.96722 1.91487 1.38819 1.94432 1.87317 1.21601 1.00598 0.98783 0.95784 1.21425 0.89906 0.98230 0.99117 1.21481 1.02355 0.95426 0.94686 1.20751 0.87898 0.97338 0.98068 1.98383 1.45044 1.75469 1.84128 1.22684 0.99155 0.81371 0.99460 0.98638 0.94706 0.95813 0.94293 0.88376 0.90840 0.88548 0.88934 0.85251 0.85607 0.81784 0.80055 0.81906 0.93596 0.94146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.87 7.71 127.77 0.98 9.85 16 2 N -0.60 -29.71 2.97 -695.03 -2.06 -31.77 16 3 C -0.27 -14.42 9.66 84.03 0.81 -13.61 16 4 H 0.08 4.01 7.82 -2.91 -0.02 3.99 16 5 C -0.06 -3.10 5.11 84.86 0.43 -2.67 16 6 N -0.94 -56.28 10.50 21.65 0.23 -56.05 16 7 Si 0.97 45.15 29.57 68.60 2.03 47.18 16 8 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 9 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 C 0.17 6.54 3.54 46.39 0.16 6.70 16 12 H 0.07 2.96 7.92 -2.39 -0.02 2.94 16 13 C -0.14 -3.98 6.49 31.78 0.21 -3.77 16 14 C 0.10 2.37 6.49 86.73 0.56 2.93 16 15 N -0.61 -19.65 3.33 -811.67 -2.70 -22.35 16 16 C 0.53 17.21 7.84 87.66 0.69 17.89 16 17 O -0.58 -24.38 16.29 -3.01 -0.05 -24.43 16 18 C -0.09 -2.17 4.45 29.10 0.13 -2.04 16 19 C -0.11 -2.66 4.38 -19.80 -0.09 -2.74 16 20 C 0.10 2.23 7.24 22.37 0.16 2.39 16 21 F -0.14 -3.57 16.48 44.97 0.74 -2.83 16 22 C -0.15 -2.39 10.03 22.32 0.22 -2.16 16 23 C -0.07 -0.84 10.04 22.26 0.22 -0.61 16 24 C -0.12 -1.86 9.83 22.29 0.22 -1.64 16 25 C -0.01 -0.29 6.31 22.32 0.14 -0.15 16 26 Cl -0.06 -1.27 27.29 -2.72 -0.07 -1.34 16 27 C 0.10 4.00 6.49 86.85 0.56 4.56 16 28 H 0.00 -0.26 7.43 -2.39 -0.02 -0.28 16 29 H 0.03 1.45 6.17 -2.38 -0.01 1.43 16 30 H 0.02 1.25 7.10 -2.39 -0.02 1.24 16 31 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.20 6.17 -2.39 -0.01 2.19 16 34 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.13 2.42 6.90 -2.39 -0.02 2.41 16 37 H 0.13 2.38 7.63 -2.38 -0.02 2.36 16 38 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.05 2.04 7.20 -2.39 -0.02 2.02 16 42 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 Total: -1.00 -74.21 362.66 4.58 -69.63 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.04 Total: 7.02 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.43 Total: 14.94 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.53 Total: -110.17 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.74 Total: -2.83 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.07 Total: -1.34 kcal Total: -74.21 4.58 -69.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972791232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.868 kcal (2) G-P(sol) polarization free energy of solvation -74.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds