Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.99985 * 2 1 4 4 C 1.54329 * 109.87843 * 121.09244 * 2 1 3 5 5 H 1.08996 * 110.87281 * 260.03892 * 4 2 1 6 6 N 1.46492 * 110.72118 * 23.24718 * 4 2 1 7 7 C 1.36934 * 120.00266 * 264.40273 * 6 4 2 8 8 H 1.08004 * 119.99851 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00397 * 180.02562 * 7 6 4 10 10 N 1.31620 * 120.00084 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99944 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47042 * 269.99929 * 11 9 7 13 13 H 1.48498 * 109.46906 * 30.00082 * 11 9 7 14 14 H 1.48492 * 109.47031 * 150.00000 * 11 9 7 15 15 C 1.55160 * 102.93879 * 141.60835 * 4 2 1 16 16 C 1.54913 * 101.58271 * 324.49748 * 15 4 2 17 17 N 1.47023 * 109.88242 * 238.89998 * 2 1 3 18 18 C 1.34781 * 125.64917 * 61.59683 * 17 2 1 19 19 O 1.21285 * 119.99510 * 0.03206 * 18 17 2 20 20 C 1.50691 * 119.99817 * 180.02562 * 18 17 2 21 21 C 1.50705 * 109.46765 * 180.02562 * 20 18 17 22 22 C 1.38243 * 119.98199 * 99.99712 * 21 20 18 23 23 C 1.38189 * 120.03673 * 179.97438 * 22 21 20 24 24 C 1.38490 * 119.99914 * 0.02562 * 23 22 21 25 25 F 1.35103 * 120.01788 * 179.97438 * 24 23 22 26 26 C 1.38413 * 119.96320 * 0.02562 * 24 23 22 27 27 C 1.38333 * 119.96355 * 359.71594 * 26 24 23 28 28 Cl 1.73601 * 120.00417 * 180.30133 * 27 26 24 29 29 H 1.08998 * 109.47119 * 293.64350 * 1 2 3 30 30 H 1.09004 * 109.46977 * 53.64307 * 1 2 3 31 31 H 1.08997 * 109.47491 * 173.64540 * 1 2 3 32 32 H 0.97010 * 120.00301 * 84.40708 * 6 4 2 33 33 H 0.96993 * 119.99938 * 179.97438 * 10 9 7 34 34 H 1.09006 * 111.00383 * 82.57268 * 15 4 2 35 35 H 1.09000 * 111.00604 * 206.42533 * 15 4 2 36 36 H 1.09005 * 110.36398 * 155.84744 * 16 15 4 37 37 H 1.09001 * 110.36579 * 278.05998 * 16 15 4 38 38 H 1.09002 * 109.47542 * 299.99510 * 20 18 17 39 39 H 1.08996 * 109.47637 * 60.00343 * 20 18 17 40 40 H 1.07998 * 119.98598 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.99533 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.02028 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.3525 -0.0482 2.0223 6 7 1.0471 -1.6854 1.7475 7 6 0.2102 -1.3081 2.7636 8 1 0.2927 -0.3204 3.1926 9 6 -0.7443 -2.1951 3.2422 10 7 -1.5490 -1.8323 4.2185 11 14 -0.8866 -3.9038 2.5007 12 1 -1.8443 -3.8728 1.3662 13 1 0.4450 -4.3440 2.0127 14 1 -1.3737 -4.8527 3.5338 15 6 3.2875 -1.5143 0.6925 16 6 2.8144 -1.8795 -0.7367 17 7 2.0300 -0.7142 -1.1839 18 6 1.8073 -0.3623 -2.4657 19 8 1.1434 0.6208 -2.7180 20 6 2.3832 -1.1904 -3.5853 21 6 1.9910 -0.5870 -4.9094 22 6 2.8905 0.2008 -5.6031 23 6 2.5323 0.7542 -6.8176 24 6 1.2713 0.5202 -7.3402 25 9 0.9205 1.0615 -8.5273 26 6 0.3703 -0.2678 -6.6451 27 6 0.7324 -0.8254 -5.4320 28 17 -0.3942 -1.8202 -4.5631 29 1 -0.3633 0.4121 0.9414 30 1 -0.3633 0.6092 -0.8277 31 1 -0.3634 -1.0213 -0.1137 32 1 0.9727 -2.5725 1.3620 33 1 -2.2162 -2.4520 4.5526 34 1 4.1654 -0.8689 0.6605 35 1 3.4851 -2.4111 1.2797 36 1 3.6716 -2.0340 -1.3921 37 1 2.1901 -2.7727 -0.7129 38 1 3.4699 -1.2083 -3.5023 39 1 1.9971 -2.2077 -3.5206 40 1 3.8738 0.3839 -5.1957 41 1 3.2358 1.3693 -7.3592 42 1 -0.6135 -0.4505 -7.0516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986816515.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = -59.221250 kcal Electronic energy + Delta-G solvation = -27392.481541 eV Core-core repulsion = 23312.533927 eV Total energy + Delta-G solvation = -4079.947614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.01820 -41.39873 -40.24712 -38.70165 -37.53517 -35.80960 -33.96281 -33.30733 -32.12178 -31.99693 -31.04958 -28.23021 -26.85320 -24.93989 -24.22312 -23.94540 -22.77205 -21.36334 -19.76121 -19.71724 -18.88843 -18.08511 -17.82482 -17.40433 -16.71973 -16.70154 -16.34280 -15.99794 -15.70572 -15.56848 -15.18439 -15.14092 -14.78672 -14.77419 -14.49278 -14.23399 -13.93677 -13.73257 -13.48646 -13.20632 -13.03720 -12.94424 -12.80447 -12.44917 -12.37906 -12.34672 -12.28461 -12.03149 -11.96653 -11.87053 -11.68411 -11.60277 -11.00010 -10.79909 -10.04209 -9.65319 -9.55423 -9.29191 -7.98702 -5.31095 -0.11208 0.01727 0.98782 1.35801 1.40479 1.47082 1.72698 2.03587 2.45418 2.49962 3.14294 3.31744 3.52232 3.58837 3.61460 3.68655 3.74753 3.88257 4.06778 4.13230 4.27850 4.33594 4.40076 4.45036 4.54820 4.59501 4.65761 4.77463 4.83250 4.85697 4.88392 5.01466 5.03978 5.14986 5.22640 5.26641 5.30251 5.49029 5.52399 5.67235 5.82757 6.24764 6.70023 7.11386 7.27560 7.86487 8.04564 9.22880 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.003069 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.724965 B = 9122.380890 C = 9750.216480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.118 3.882 3 H 0.065 0.935 4 C 0.165 3.835 5 H 0.076 0.924 6 N -0.734 5.734 7 C -0.211 4.211 8 H 0.060 0.940 9 C -0.064 4.064 10 N -0.985 5.985 11 Si 0.943 3.057 12 H -0.292 1.292 13 H -0.240 1.240 14 H -0.301 1.301 15 C -0.132 4.132 16 C 0.095 3.905 17 N -0.608 5.608 18 C 0.525 3.475 19 O -0.575 6.575 20 C -0.096 4.096 21 C -0.076 4.076 22 C -0.062 4.062 23 C -0.142 4.142 24 C 0.097 3.903 25 F -0.140 7.140 26 C -0.159 4.159 27 C -0.009 4.009 28 Cl -0.067 7.067 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.036 0.964 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.061 0.939 38 H 0.150 0.850 39 H 0.114 0.886 40 H 0.177 0.823 41 H 0.170 0.830 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.623 -0.701 -23.746 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.012 3.988 3 H 0.083 0.917 4 C 0.055 3.945 5 H 0.094 0.906 6 N -0.376 5.376 7 C -0.342 4.342 8 H 0.078 0.922 9 C -0.255 4.255 10 N -0.637 5.637 11 Si 0.771 3.229 12 H -0.219 1.219 13 H -0.164 1.164 14 H -0.228 1.228 15 C -0.170 4.170 16 C -0.026 4.026 17 N -0.342 5.342 18 C 0.315 3.685 19 O -0.455 6.455 20 C -0.136 4.136 21 C -0.077 4.077 22 C -0.080 4.080 23 C -0.161 4.161 24 C 0.077 3.923 25 F -0.118 7.118 26 C -0.179 4.179 27 C -0.036 4.036 28 Cl -0.038 7.038 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.199 0.801 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.080 0.920 38 H 0.167 0.833 39 H 0.132 0.868 40 H 0.194 0.806 41 H 0.187 0.813 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.067 -0.123 -23.741 28.667 hybrid contribution -1.701 -0.836 0.002 1.895 sum 14.366 -0.959 -23.739 27.764 Atomic orbital electron populations 1.21582 0.96452 1.00130 0.99524 1.22317 0.93701 0.96200 0.86619 0.91687 1.21443 0.88755 0.91964 0.92346 0.90612 1.42624 1.39744 1.14124 1.41070 1.18937 1.08733 0.98510 1.08054 0.92235 1.25384 0.98649 1.02066 0.99363 1.69870 1.24658 1.37246 1.31879 0.85584 0.78987 0.81113 0.77174 1.21938 1.16415 1.22781 1.23125 0.97164 1.01950 0.94783 1.22571 0.95805 0.87556 0.96709 1.48669 1.52204 1.28826 1.04470 1.20595 0.80066 0.85136 0.82739 1.90701 1.41341 1.29758 1.83698 1.20768 1.05376 0.99733 0.87680 1.19506 0.92457 0.99431 0.96319 1.21236 1.00585 0.93259 0.92901 1.21544 0.95075 1.01987 0.97487 1.17639 0.94770 0.97071 0.82811 1.91509 1.92574 1.84043 1.43706 1.21029 1.01554 1.00182 0.95096 1.20656 0.91517 0.97820 0.93635 1.98402 1.61319 1.67843 1.76229 0.93631 0.94952 0.94474 0.80096 0.93667 0.87521 0.88852 0.86293 0.92028 0.83260 0.86798 0.80562 0.81273 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 8.02 71.98 0.58 -4.31 16 2 C 0.12 3.90 3.44 45.34 0.16 4.05 16 3 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.16 5.33 3.52 46.18 0.16 5.50 16 5 H 0.08 2.56 8.06 -2.39 -0.02 2.54 16 6 N -0.73 -30.52 3.71 -317.33 -1.18 -31.70 16 7 C -0.21 -11.23 8.89 84.03 0.75 -10.48 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 9 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 10 N -0.99 -62.37 13.97 21.65 0.30 -62.07 16 11 Si 0.94 44.25 27.74 68.60 1.90 46.15 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.24 -9.66 6.52 99.48 0.65 -9.01 16 14 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 15 C -0.13 -2.74 6.69 31.99 0.21 -2.53 16 16 C 0.10 1.80 6.62 86.86 0.58 2.37 16 17 N -0.61 -16.00 3.07 -788.03 -2.42 -18.41 16 18 C 0.52 14.03 7.42 87.65 0.65 14.68 16 19 O -0.58 -20.50 15.10 -3.04 -0.05 -20.54 16 20 C -0.10 -1.62 4.30 29.10 0.13 -1.50 16 21 C -0.08 -1.44 4.43 -19.84 -0.09 -1.53 16 22 C -0.06 -0.85 9.66 22.26 0.22 -0.64 16 23 C -0.14 -2.04 10.03 22.32 0.22 -1.82 16 24 C 0.10 1.84 7.30 22.37 0.16 2.01 16 25 F -0.14 -2.80 17.27 44.97 0.78 -2.02 16 26 C -0.16 -3.37 9.81 22.33 0.22 -3.16 16 27 C -0.01 -0.21 6.20 22.32 0.14 -0.08 16 28 Cl -0.07 -1.72 27.33 -2.72 -0.07 -1.79 16 29 H 0.04 2.10 7.11 -2.39 -0.02 2.08 16 30 H 0.03 1.36 7.08 -2.39 -0.02 1.34 16 31 H 0.04 1.62 7.63 -2.39 -0.02 1.61 16 32 H 0.37 14.70 5.70 -92.70 -0.53 14.17 16 33 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.12 1.16 7.48 -2.38 -0.02 1.14 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.15 1.18 7.71 -2.39 -0.02 1.16 16 39 H 0.11 1.81 7.34 -2.39 -0.02 1.79 16 40 H 0.18 1.16 8.04 -2.91 -0.02 1.13 16 41 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -75.00 361.95 4.28 -70.72 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.47 Total: 20.25 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 4.55 Total: -0.59 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -3.29 Total: -112.18 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.90 Total: 46.15 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -75.00 4.28 -70.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986816515.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.501 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds