Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.99630 * 2 1 4 4 C 1.54337 * 109.77653 * 121.16154 * 2 1 3 5 5 H 1.08998 * 110.51699 * 215.81152 * 4 2 1 6 6 N 1.46501 * 111.00285 * 338.95869 * 4 2 1 7 7 C 1.36939 * 120.00019 * 200.23472 * 6 4 2 8 8 H 1.07998 * 119.99803 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99785 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00147 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47046 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47245 * 120.00050 * 11 9 7 14 14 H 1.48506 * 109.47036 * 240.00164 * 11 9 7 15 15 C 1.55153 * 103.02171 * 97.49648 * 4 2 1 16 16 C 1.54914 * 101.58177 * 35.30756 * 15 4 2 17 17 N 1.47022 * 109.88365 * 238.89754 * 2 1 3 18 18 C 1.34777 * 125.64288 * 59.56870 * 17 2 1 19 19 O 1.21282 * 120.00204 * 359.70577 * 18 17 2 20 20 C 1.50700 * 119.99654 * 179.71637 * 18 17 2 21 21 C 1.50704 * 109.47132 * 179.97438 * 20 18 17 22 22 C 1.38235 * 120.00378 * 99.99783 * 21 20 18 23 23 C 1.38226 * 120.04680 * 180.02562 * 22 21 20 24 24 C 1.38255 * 120.05959 * 359.97438 * 23 22 21 25 25 C 1.38284 * 120.01644 * 359.97438 * 24 23 22 26 26 Cl 1.73599 * 120.02475 * 179.97438 * 25 24 23 27 27 C 1.38405 * 120.00396 * 280.22596 * 21 20 18 28 28 F 1.35101 * 120.03308 * 0.02794 * 27 21 20 29 29 H 1.08999 * 109.47120 * 179.64508 * 1 2 3 30 30 H 1.09000 * 109.47121 * 299.65030 * 1 2 3 31 31 H 1.09004 * 109.46655 * 59.64381 * 1 2 3 32 32 H 0.97001 * 119.99958 * 20.23082 * 6 4 2 33 33 H 0.97003 * 119.99928 * 179.97438 * 10 9 7 34 34 H 1.09001 * 111.00537 * 277.23444 * 15 4 2 35 35 H 1.08999 * 111.04091 * 153.39913 * 15 4 2 36 36 H 1.08998 * 110.36839 * 204.15285 * 16 15 4 37 37 H 1.08997 * 110.45836 * 81.87704 * 16 15 4 38 38 H 1.09003 * 109.47413 * 59.99470 * 20 18 17 39 39 H 1.08996 * 109.46877 * 299.99706 * 20 18 17 40 40 H 1.08000 * 119.98073 * 0.02562 * 22 21 20 41 41 H 1.07999 * 119.96727 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.99076 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7515 1.2428 5 1 2.9605 -0.2815 1.6198 6 7 1.0287 -0.8105 2.2893 7 6 1.3907 -1.0479 3.5885 8 1 2.4307 -1.1912 3.8416 9 6 0.4209 -1.1032 4.5801 10 7 -0.8466 -0.9280 4.2715 11 14 0.9146 -1.4263 6.3524 12 1 2.3886 -1.5879 6.4340 13 1 0.4940 -0.2819 7.2000 14 1 0.2539 -2.6668 6.8321 15 6 2.3561 -2.1697 0.6917 16 6 2.8614 -1.8466 -0.7367 17 7 2.0301 -0.7142 -1.1838 18 6 1.7755 -0.3845 -2.4656 19 8 1.0747 0.5726 -2.7179 20 6 2.3614 -1.2055 -3.5853 21 6 1.9274 -0.6315 -4.9094 22 6 2.7877 0.1785 -5.6270 23 6 2.3903 0.7059 -6.8413 24 6 1.1322 0.4239 -7.3405 25 6 0.2700 -0.3869 -6.6253 26 17 -1.3099 -0.7406 -7.2515 27 6 0.6658 -0.9113 -5.4050 28 9 -0.1775 -1.6986 -4.7019 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5084 0.8931 31 1 -0.3633 0.5194 -0.8868 32 1 0.0946 -0.6813 2.0619 33 1 -1.5243 -0.9671 4.9645 34 1 1.4521 -2.7778 0.6581 35 1 3.1324 -2.6598 1.2792 36 1 2.7179 -2.7049 -1.3930 37 1 3.9126 -1.5596 -0.7131 38 1 2.0110 -2.2344 -3.5034 39 1 3.4492 -1.1859 -3.5194 40 1 3.7709 0.3993 -5.2386 41 1 3.0633 1.3388 -7.4007 42 1 0.8231 0.8362 -8.2896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987058576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -59.167634 kcal Electronic energy + Delta-G solvation = -27129.188013 eV Core-core repulsion = 23049.242723 eV Total energy + Delta-G solvation = -4079.945289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.05058 -41.40383 -40.13366 -38.78876 -37.59541 -35.92087 -34.14032 -33.27013 -32.09245 -31.41290 -30.78709 -28.57060 -26.78944 -25.41337 -24.08520 -23.84173 -22.95093 -21.01994 -19.93302 -19.43533 -18.72670 -18.20419 -17.86453 -17.22622 -16.98472 -16.81725 -16.38986 -16.37104 -15.70085 -15.46849 -15.43583 -14.76879 -14.68174 -14.41103 -14.35744 -14.02892 -13.89002 -13.64729 -13.41181 -13.20975 -13.01873 -12.92514 -12.88495 -12.69767 -12.56170 -12.44433 -12.41126 -12.05688 -12.00907 -11.96271 -11.60605 -11.51598 -10.92898 -10.88782 -9.86313 -9.70628 -9.64986 -9.01060 -7.93524 -5.22752 -0.02727 0.01927 0.95948 1.49375 1.49905 1.59861 1.62407 1.94085 2.47962 2.58340 3.08512 3.37067 3.40064 3.55448 3.78942 3.80841 3.90683 3.97802 4.02755 4.18100 4.20492 4.29292 4.37401 4.42023 4.48875 4.57162 4.64712 4.65746 4.80726 4.86716 4.92604 4.95560 5.05396 5.17701 5.19581 5.26567 5.29726 5.33514 5.51427 5.56221 5.72255 6.28109 6.58985 7.15869 7.35045 8.09319 8.32118 9.30539 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023880 B = 0.002398 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.264007 B =11672.650423 C =12283.408272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.136 3.864 3 H 0.066 0.934 4 C 0.165 3.835 5 H 0.070 0.930 6 N -0.735 5.735 7 C -0.234 4.234 8 H 0.084 0.916 9 C -0.079 4.079 10 N -0.973 5.973 11 Si 0.973 3.027 12 H -0.261 1.261 13 H -0.298 1.298 14 H -0.297 1.297 15 C -0.147 4.147 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.523 3.477 19 O -0.579 6.579 20 C -0.090 4.090 21 C -0.102 4.102 22 C -0.073 4.073 23 C -0.108 4.108 24 C -0.085 4.085 25 C -0.094 4.094 26 Cl -0.064 7.064 27 C 0.092 3.908 28 F -0.144 7.144 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.379 0.621 33 H 0.249 0.751 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.153 0.847 40 H 0.170 0.830 41 H 0.178 0.822 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.260 -0.731 -26.362 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.084 0.916 4 C 0.056 3.944 5 H 0.087 0.913 6 N -0.377 5.377 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.271 4.271 10 N -0.624 5.624 11 Si 0.803 3.197 12 H -0.185 1.185 13 H -0.226 1.226 14 H -0.225 1.225 15 C -0.187 4.187 16 C -0.018 4.018 17 N -0.343 5.343 18 C 0.313 3.687 19 O -0.459 6.459 20 C -0.129 4.129 21 C -0.104 4.104 22 C -0.091 4.091 23 C -0.126 4.126 24 C -0.104 4.104 25 C -0.121 4.121 26 Cl -0.035 7.035 27 C 0.072 3.928 28 F -0.123 7.123 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.214 0.786 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.171 0.829 40 H 0.188 0.812 41 H 0.195 0.805 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.815 -0.306 -26.438 29.382 hybrid contribution -1.559 -0.320 1.448 2.151 sum 11.256 -0.625 -24.990 27.415 Atomic orbital electron populations 1.21804 0.96376 1.01030 1.00960 1.21538 0.93806 0.95847 0.85634 0.91556 1.21399 0.92039 0.94344 0.86663 0.91251 1.42881 1.05742 1.85540 1.03555 1.19700 0.93321 1.38582 0.85016 0.89828 1.25582 0.95387 1.03911 1.02194 1.69842 1.00409 1.58921 1.33209 0.85067 0.78034 0.76431 0.80177 1.18461 1.22567 1.22451 1.23362 1.01316 0.98507 0.95553 1.22590 0.95450 0.88581 0.95219 1.48634 1.50345 1.31053 1.04250 1.20752 0.80321 0.84857 0.82724 1.90696 1.40191 1.31226 1.83770 1.20665 1.05188 0.99858 0.87215 1.19588 0.92399 1.01229 0.97150 1.21486 1.00492 0.93093 0.94058 1.21613 0.95561 0.99519 0.95888 1.21360 0.93142 0.95289 1.00578 1.21236 0.89936 1.05149 0.95777 1.98376 1.24678 1.94114 1.86358 1.17664 0.89291 0.95212 0.90617 1.91485 1.70627 1.71878 1.78318 0.93778 0.92648 0.92939 0.78556 0.94185 0.93055 0.89133 0.88188 0.87912 0.86637 0.82925 0.81206 0.80487 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.81 7.94 71.98 0.57 -5.24 16 2 C 0.14 4.79 3.49 45.35 0.16 4.95 16 3 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 4 C 0.17 6.11 3.44 46.18 0.16 6.27 16 5 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 6 N -0.73 -35.93 5.02 -317.31 -1.59 -37.52 16 7 C -0.23 -12.50 9.98 84.03 0.84 -11.66 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 10 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 11 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 14 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 15 C -0.15 -4.34 6.77 31.99 0.22 -4.13 16 16 C 0.10 2.12 6.69 86.86 0.58 2.70 16 17 N -0.61 -16.96 3.08 -788.02 -2.43 -19.38 16 18 C 0.52 14.68 7.62 87.66 0.67 15.35 16 19 O -0.58 -21.44 14.83 -3.04 -0.05 -21.49 16 20 C -0.09 -1.59 4.56 29.10 0.13 -1.46 16 21 C -0.10 -2.02 4.44 -19.82 -0.09 -2.11 16 22 C -0.07 -0.96 9.67 22.27 0.22 -0.74 16 23 C -0.11 -1.16 10.04 22.27 0.22 -0.94 16 24 C -0.09 -1.25 9.83 22.28 0.22 -1.03 16 25 C -0.09 -2.04 6.33 22.36 0.14 -1.90 16 26 Cl -0.06 -1.44 28.62 -2.72 -0.08 -1.52 16 27 C 0.09 2.31 7.09 22.39 0.16 2.47 16 28 F -0.14 -4.37 16.24 44.97 0.73 -3.63 16 29 H 0.04 1.84 8.06 -2.39 -0.02 1.82 16 30 H 0.05 2.47 6.74 -2.39 -0.02 2.46 16 31 H 0.05 2.17 6.74 -2.38 -0.02 2.15 16 32 H 0.38 20.27 4.97 -92.71 -0.46 19.81 16 33 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.10 1.51 7.48 -2.39 -0.02 1.50 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.12 1.86 7.66 -2.39 -0.02 1.84 16 39 H 0.15 1.33 8.00 -2.39 -0.02 1.31 16 40 H 0.17 1.08 8.04 -2.91 -0.02 1.06 16 41 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 42 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -75.48 365.72 4.15 -71.33 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.59 Total: 25.61 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 4.66 Total: -1.45 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -3.74 Total: -116.28 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.05 Total: -21.49 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.73 Total: -3.63 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -75.48 4.15 -71.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987058576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.164 kcal (2) G-P(sol) polarization free energy of solvation -75.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds