Wall clock time and date at job start Sat Apr 11 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87211 * 2 1 4 4 C 1.54332 * 109.88191 * 121.16520 * 2 1 3 5 5 H 1.08994 * 110.72102 * 259.97849 * 4 2 1 6 6 N 1.46504 * 110.71807 * 23.25588 * 4 2 1 7 7 C 1.36936 * 119.99556 * 205.00091 * 6 4 2 8 8 H 1.07999 * 120.00188 * 359.97438 * 7 6 4 9 9 C 1.38816 * 119.99753 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99753 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99864 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47502 * 89.99646 * 11 9 7 13 13 H 1.48498 * 109.47182 * 209.99550 * 11 9 7 14 14 H 1.48504 * 109.47572 * 329.99744 * 11 9 7 15 15 C 1.55161 * 102.93847 * 141.60918 * 4 2 1 16 16 C 1.55133 * 101.48849 * 324.34010 * 15 4 2 17 17 N 1.47016 * 109.88699 * 238.97673 * 2 1 3 18 18 C 1.34778 * 125.64671 * 61.60237 * 17 2 1 19 19 O 1.21288 * 119.99902 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00315 * 180.02562 * 18 17 2 21 21 C 1.50703 * 109.47318 * 180.02562 * 20 18 17 22 22 C 1.38263 * 119.96806 * 269.97490 * 21 20 18 23 23 C 1.38194 * 120.05047 * 179.97438 * 22 21 20 24 24 C 1.38444 * 119.98557 * 0.02562 * 23 22 21 25 25 F 1.35103 * 120.03218 * 179.97438 * 24 23 22 26 26 C 1.38558 * 119.93840 * 359.74934 * 24 23 22 27 27 Cl 1.73599 * 120.02362 * 180.27703 * 26 24 23 28 28 C 1.38215 * 119.96843 * 90.00261 * 21 20 18 29 29 H 1.09005 * 109.46971 * 179.56660 * 1 2 3 30 30 H 1.09002 * 109.47367 * 299.56704 * 1 2 3 31 31 H 1.08994 * 109.47229 * 59.56863 * 1 2 3 32 32 H 0.97000 * 119.99835 * 24.98713 * 6 4 2 33 33 H 0.97003 * 119.99324 * 180.02562 * 10 9 7 34 34 H 1.09010 * 110.99942 * 82.57691 * 15 4 2 35 35 H 1.08994 * 111.00684 * 206.38705 * 15 4 2 36 36 H 1.09002 * 110.48760 * 278.45085 * 16 15 4 37 37 H 1.09000 * 110.33879 * 156.05935 * 16 15 4 38 38 H 1.09001 * 109.46707 * 59.99922 * 20 18 17 39 39 H 1.09003 * 109.46886 * 300.00253 * 20 18 17 40 40 H 1.08005 * 119.97571 * 359.97438 * 22 21 20 41 41 H 1.07999 * 120.01044 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99244 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7511 1.2419 5 1 2.3528 -0.0485 2.0201 6 7 1.0472 -1.6878 1.7453 7 6 1.0606 -2.0657 3.0614 8 1 1.8143 -1.6734 3.7282 9 6 0.1056 -2.9529 3.5386 10 7 -0.8132 -3.4304 2.7260 11 14 0.1243 -3.4688 5.3337 12 1 -0.7101 -2.5310 6.1272 13 1 -0.4214 -4.8442 5.4592 14 1 1.5193 -3.4415 5.8422 15 6 3.2876 -1.5151 0.6905 16 6 2.8100 -1.8815 -0.7393 17 7 2.0301 -0.7125 -1.1847 18 6 1.8075 -0.3589 -2.4661 19 8 1.1436 0.6246 -2.7172 20 6 2.3834 -1.1854 -3.5869 21 6 1.9914 -0.5801 -4.9102 22 6 0.8207 -0.9752 -5.5306 23 6 0.4593 -0.4209 -6.7438 24 6 1.2702 0.5304 -7.3389 25 9 0.9180 1.0725 -8.5252 26 6 2.4409 0.9294 -6.7144 27 17 3.4558 2.1273 -7.4552 28 6 2.8028 0.3690 -5.5027 29 1 -0.3633 -1.0277 -0.0078 30 1 -0.3634 0.5071 0.8938 31 1 -0.3633 0.5205 -0.8860 32 1 0.3704 -2.0402 1.1463 33 1 -1.4808 -4.0501 3.0596 34 1 4.1655 -0.8696 0.6594 35 1 3.4856 -2.4123 1.2769 36 1 2.1802 -2.7708 -0.7149 37 1 3.6657 -2.0393 -1.3957 38 1 1.9972 -2.2027 -3.5236 39 1 3.4701 -1.2034 -3.5037 40 1 0.1881 -1.7177 -5.0668 41 1 -0.4551 -0.7304 -7.2281 42 1 3.7170 0.6768 -5.0171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987065426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:38 Heat of formation + Delta-G solvation = -59.413944 kcal Electronic energy + Delta-G solvation = -26806.046738 eV Core-core repulsion = 22726.090768 eV Total energy + Delta-G solvation = -4079.955970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.03560 -41.39849 -40.20465 -38.68799 -37.60565 -35.70248 -33.91011 -33.06064 -32.12672 -31.99325 -30.62442 -28.24010 -26.69293 -25.45551 -24.24723 -23.95618 -22.72818 -21.06682 -19.75470 -19.38325 -18.84484 -18.00509 -17.81670 -17.43152 -16.94244 -16.82370 -16.39865 -15.93770 -15.66000 -15.50479 -15.13261 -14.96423 -14.68904 -14.54095 -14.24553 -14.15248 -13.86920 -13.76486 -13.30318 -13.15398 -12.94283 -12.86930 -12.80641 -12.54240 -12.43066 -12.33836 -12.31193 -12.19956 -12.03430 -11.98414 -11.60588 -11.41240 -10.89603 -10.80234 -10.02709 -9.63803 -9.56717 -8.96126 -7.90222 -5.17410 -0.12642 0.04356 0.92456 1.51270 1.52365 1.59907 1.70415 2.00652 2.46751 2.59674 3.02516 3.41341 3.50035 3.62691 3.64136 3.86291 3.92105 4.03241 4.10409 4.11190 4.29187 4.33946 4.37304 4.46194 4.58484 4.65650 4.66022 4.77051 4.83282 4.85453 4.89243 5.00841 5.03877 5.11831 5.28489 5.34758 5.38958 5.44196 5.50272 5.60231 5.64889 6.31906 6.67724 7.23859 7.39524 8.13990 8.37266 9.33007 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027323 B = 0.002221 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.523242 B =12601.931780 C =13017.840039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.132 3.868 3 H 0.076 0.924 4 C 0.161 3.839 5 H 0.069 0.931 6 N -0.723 5.723 7 C -0.233 4.233 8 H 0.079 0.921 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.966 3.034 12 H -0.294 1.294 13 H -0.300 1.300 14 H -0.268 1.268 15 C -0.148 4.148 16 C 0.107 3.893 17 N -0.608 5.608 18 C 0.524 3.476 19 O -0.578 6.578 20 C -0.091 4.091 21 C -0.065 4.065 22 C -0.075 4.075 23 C -0.139 4.139 24 C 0.087 3.913 25 F -0.137 7.137 26 C -0.085 4.085 27 Cl -0.056 7.056 28 C -0.072 4.072 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.377 0.623 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.156 0.844 41 H 0.165 0.835 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.855 4.059 -18.889 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.028 3.972 3 H 0.094 0.906 4 C 0.051 3.949 5 H 0.087 0.913 6 N -0.365 5.365 7 C -0.364 4.364 8 H 0.097 0.903 9 C -0.265 4.265 10 N -0.619 5.619 11 Si 0.797 3.203 12 H -0.221 1.221 13 H -0.227 1.227 14 H -0.192 1.192 15 C -0.189 4.189 16 C -0.015 4.015 17 N -0.341 5.341 18 C 0.314 3.686 19 O -0.458 6.458 20 C -0.130 4.130 21 C -0.066 4.066 22 C -0.093 4.093 23 C -0.158 4.158 24 C 0.067 3.933 25 F -0.116 7.116 26 C -0.112 4.112 27 Cl -0.027 7.027 28 C -0.091 4.091 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.212 0.788 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.632 4.711 -19.023 22.296 hybrid contribution -0.822 -0.139 0.653 1.059 sum 9.810 4.573 -18.371 21.322 Atomic orbital electron populations 1.21746 0.95969 1.00965 1.00686 1.21785 0.93926 0.96097 0.85413 0.90568 1.21417 0.89477 0.91298 0.92699 0.91349 1.42658 1.33751 1.52118 1.07961 1.19613 1.09786 1.19551 0.87499 0.90306 1.25442 0.98393 1.01332 1.01340 1.69808 1.19471 1.36942 1.35703 0.85240 0.77790 0.76467 0.80838 1.22144 1.22742 1.19237 1.23401 0.98439 1.01663 0.95407 1.22445 0.95446 0.87295 0.96299 1.48698 1.52230 1.28585 1.04587 1.20737 0.80072 0.85159 0.82660 1.90705 1.41709 1.29647 1.83762 1.20734 1.04898 1.00197 0.87171 1.19499 0.94906 0.96614 0.95537 1.21308 0.95383 0.99077 0.93492 1.21349 1.00877 0.96575 0.96954 1.17668 0.94768 0.97392 0.83464 1.91507 1.91741 1.84664 1.43670 1.21065 0.94247 0.98345 0.97563 1.98377 1.67248 1.54981 1.82138 1.20989 1.01131 0.94818 0.92142 0.93880 0.92914 0.93177 0.78805 0.94267 0.89063 0.90812 0.92400 0.86968 0.85146 0.84441 0.82645 0.81772 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 8.51 71.98 0.61 -4.41 16 2 C 0.13 4.24 3.43 45.35 0.16 4.39 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 4 C 0.16 5.54 3.48 46.18 0.16 5.70 16 5 H 0.07 2.36 8.09 -2.39 -0.02 2.34 16 6 N -0.72 -32.62 4.54 -317.30 -1.44 -34.07 16 7 C -0.23 -11.82 9.96 84.03 0.84 -10.99 16 8 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 9 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 10 N -0.97 -56.52 13.06 21.65 0.28 -56.24 16 11 Si 0.97 44.07 29.55 68.60 2.03 46.09 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 15 C -0.15 -3.94 6.78 32.07 0.22 -3.72 16 16 C 0.11 2.42 6.68 86.94 0.58 3.00 16 17 N -0.61 -16.15 3.06 -787.61 -2.41 -18.56 16 18 C 0.52 13.46 7.64 87.66 0.67 14.13 16 19 O -0.58 -19.62 15.07 -3.06 -0.05 -19.66 16 20 C -0.09 -1.41 4.83 29.10 0.14 -1.27 16 21 C -0.06 -1.17 4.37 -19.86 -0.09 -1.25 16 22 C -0.07 -1.30 9.70 22.27 0.22 -1.08 16 23 C -0.14 -2.47 10.03 22.31 0.22 -2.25 16 24 C 0.09 1.86 7.28 22.40 0.16 2.02 16 25 F -0.14 -3.13 16.84 44.97 0.76 -2.38 16 26 C -0.08 -1.79 6.33 22.37 0.14 -1.65 16 27 Cl -0.06 -1.15 28.62 -2.72 -0.08 -1.23 16 28 C -0.07 -1.35 9.48 22.28 0.21 -1.14 16 29 H 0.04 1.78 6.20 -2.38 -0.01 1.77 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.87 6.88 -2.39 -0.02 1.85 16 32 H 0.38 18.67 5.67 -92.71 -0.53 18.14 16 33 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.11 1.55 7.48 -2.39 -0.02 1.54 16 38 H 0.13 1.52 8.09 -2.39 -0.02 1.50 16 39 H 0.14 1.28 7.79 -2.39 -0.02 1.26 16 40 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -66.87 367.28 4.33 -62.54 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.53 Total: 25.48 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 4.71 Total: -1.98 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -3.57 Total: -108.87 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.66 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.76 Total: -2.38 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -66.87 4.33 -62.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987065426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.131 kcal (2) G-P(sol) polarization free energy of solvation -66.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds