Wall clock time and date at job start Sat Apr 11 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.00063 * 2 1 4 4 C 1.54323 * 109.88724 * 121.09615 * 2 1 3 5 5 H 1.09005 * 110.86863 * 23.17730 * 4 2 1 6 6 N 1.46498 * 110.71924 * 259.97540 * 4 2 1 7 7 C 1.36943 * 119.99727 * 160.02217 * 6 4 2 8 8 H 1.07998 * 120.00392 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99586 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00460 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99694 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 60.00129 * 11 9 7 14 14 H 1.48500 * 109.47454 * 300.00122 * 11 9 7 15 15 C 1.55150 * 102.94459 * 141.60848 * 4 2 1 16 16 C 1.54911 * 101.58513 * 324.50188 * 15 4 2 17 17 N 1.47023 * 109.88175 * 238.90479 * 2 1 3 18 18 C 1.34780 * 125.64731 * 61.60781 * 17 2 1 19 19 O 1.21279 * 119.99941 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00053 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47231 * 179.97438 * 20 18 17 22 22 C 1.38273 * 119.96578 * 90.00024 * 21 20 18 23 23 C 1.38194 * 120.04440 * 179.97438 * 22 21 20 24 24 C 1.38435 * 119.98963 * 0.02596 * 23 22 21 25 25 F 1.35111 * 120.02949 * 179.97438 * 24 23 22 26 26 C 1.38550 * 119.94393 * 359.97438 * 24 23 22 27 27 Cl 1.73601 * 120.02745 * 179.97438 * 26 24 23 28 28 C 1.38216 * 119.97127 * 269.72703 * 21 20 18 29 29 H 1.09005 * 109.46766 * 298.90049 * 1 2 3 30 30 H 1.08999 * 109.47465 * 58.90411 * 1 2 3 31 31 H 1.09000 * 109.46777 * 178.90875 * 1 2 3 32 32 H 0.96998 * 120.00095 * 340.01677 * 6 4 2 33 33 H 0.97001 * 119.99952 * 359.97438 * 10 9 7 34 34 H 1.09002 * 111.00582 * 82.57083 * 15 4 2 35 35 H 1.09001 * 111.00642 * 206.38912 * 15 4 2 36 36 H 1.09000 * 110.36907 * 155.84729 * 16 15 4 37 37 H 1.09006 * 110.36438 * 278.17409 * 16 15 4 38 38 H 1.08998 * 109.46886 * 299.99949 * 20 18 17 39 39 H 1.09001 * 109.46955 * 59.99633 * 20 18 17 40 40 H 1.07996 * 119.97126 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.99880 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.99007 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 1.3065 -1.4459 1.6210 6 7 2.4555 0.1961 2.2874 7 6 2.5576 -0.2226 3.5873 8 1 2.3424 -1.2497 3.8423 9 6 2.9377 0.6733 4.5771 10 7 3.1995 1.9252 4.2665 11 14 3.0763 0.1024 6.3503 12 1 3.4964 1.2413 7.2057 13 1 4.0846 -0.9840 6.4432 14 1 1.7589 -0.4043 6.8117 15 6 3.2876 -1.5142 0.6923 16 6 2.8146 -1.8794 -0.7369 17 7 2.0300 -0.7141 -1.1839 18 6 1.8074 -0.3620 -2.4657 19 8 1.1436 0.6212 -2.7180 20 6 2.3832 -1.1900 -3.5855 21 6 1.9902 -0.5871 -4.9095 22 6 2.8011 0.3620 -5.5041 23 6 2.4426 0.9156 -6.7185 24 6 1.2705 0.5202 -7.3401 25 9 0.9189 1.0613 -8.5271 26 6 0.4582 -0.4308 -6.7439 27 17 -1.0124 -0.9276 -7.5211 28 6 0.8224 -0.9874 -5.5310 29 1 -0.3633 0.4967 0.8997 30 1 -0.3634 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 2.6485 1.1187 2.0585 33 1 3.1272 2.2218 3.3458 34 1 4.1655 -0.8688 0.6602 35 1 3.4857 -2.4107 1.2799 36 1 3.6717 -2.0338 -1.3924 37 1 2.1886 -2.7715 -0.7129 38 1 3.4698 -1.2080 -3.5023 39 1 1.9969 -2.2072 -3.5209 40 1 3.7157 0.6702 -5.0195 41 1 3.0763 1.6571 -7.1821 42 1 0.1923 -1.7323 -5.0679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987065428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:42 Heat of formation + Delta-G solvation = -48.406389 kcal Electronic energy + Delta-G solvation = -26559.046017 eV Core-core repulsion = 22479.567370 eV Total energy + Delta-G solvation = -4079.478647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.25369 -40.44099 -39.35579 -37.53497 -36.84481 -34.47507 -33.06193 -31.65380 -31.31861 -31.00644 -29.15559 -27.42481 -25.10775 -23.57480 -23.22354 -22.99452 -21.86122 -20.33484 -18.94970 -18.11168 -17.54600 -17.11020 -16.97324 -16.43553 -16.04777 -15.91554 -15.24441 -14.84581 -14.52315 -14.39521 -14.21169 -13.80392 -13.67035 -13.53522 -13.30679 -13.03661 -12.80718 -12.65580 -12.32886 -12.24337 -12.00926 -11.77237 -11.71687 -11.65349 -11.30784 -11.26042 -11.00121 -10.69659 -10.60279 -10.28640 -10.04344 -9.81844 -9.34588 -9.26320 -9.00582 -8.90467 -8.54670 -7.15927 -6.18928 -3.21134 0.58814 0.71444 1.66170 2.62911 2.84432 3.22653 3.46883 3.49817 3.67676 3.73156 4.16625 4.26478 4.51228 4.59592 4.65016 4.72230 4.87219 4.91621 5.10554 5.14914 5.20060 5.29347 5.36024 5.42933 5.50061 5.52671 5.59655 5.63507 5.69430 5.80415 5.90106 5.95309 5.99914 6.16262 6.29803 6.31251 6.45379 6.48120 6.57674 6.77881 7.61006 7.71193 8.19109 8.65908 9.10156 9.96755 10.10205 11.28832 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.002077 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.289641 B =13475.857353 C =13614.380640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.074 0.926 4 C 0.182 3.818 5 H 0.066 0.934 6 N -0.726 5.726 7 C -0.335 4.335 8 H 0.066 0.934 9 C -0.042 4.042 10 N -0.940 5.940 11 Si 1.080 2.920 12 H -0.285 1.285 13 H -0.295 1.295 14 H -0.294 1.294 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.526 3.474 19 O -0.534 6.534 20 C -0.099 4.099 21 C -0.059 4.059 22 C -0.070 4.070 23 C -0.139 4.139 24 C 0.106 3.894 25 F -0.129 7.129 26 C -0.071 4.071 27 Cl -0.052 7.052 28 C -0.068 4.068 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.368 0.632 33 H 0.256 0.744 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 -9.432 -22.677 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.084 0.916 6 N -0.368 5.368 7 C -0.466 4.466 8 H 0.084 0.916 9 C -0.240 4.240 10 N -0.584 5.584 11 Si 0.911 3.089 12 H -0.210 1.210 13 H -0.222 1.222 14 H -0.222 1.222 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.343 5.343 18 C 0.314 3.686 19 O -0.411 6.411 20 C -0.139 4.139 21 C -0.060 4.060 22 C -0.088 4.088 23 C -0.158 4.158 24 C 0.086 3.914 25 F -0.107 7.107 26 C -0.099 4.099 27 Cl -0.023 7.023 28 C -0.087 4.087 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.202 0.798 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.444 -8.615 -21.342 23.060 hybrid contribution -0.451 -0.286 -1.906 1.979 sum -1.895 -8.901 -23.247 24.965 Atomic orbital electron populations 1.22041 0.94776 1.01687 1.02734 1.21892 0.94512 0.96710 0.84504 0.90761 1.21178 0.93569 0.91448 0.86815 0.91641 1.42357 1.82101 1.08426 1.03938 1.19988 1.44765 0.97002 0.84857 0.91568 1.25805 0.99420 0.94441 1.04296 1.70888 1.51436 1.15828 1.20293 0.83244 0.75923 0.74856 0.74922 1.21009 1.22194 1.22173 1.23546 1.01261 1.01819 0.93017 1.22422 0.94618 0.88316 0.97276 1.48587 1.52170 1.28682 1.04907 1.20000 0.80953 0.85469 0.82178 1.90729 1.39794 1.27452 1.83131 1.20670 1.03254 1.00158 0.89794 1.19309 0.94411 0.97138 0.95144 1.20997 0.99828 0.94281 0.93729 1.21091 0.95807 1.02194 0.96714 1.17409 0.95062 0.95551 0.83405 1.91539 1.91812 1.84270 1.43106 1.20904 0.91321 1.00793 0.96876 1.98388 1.33295 1.90319 1.80337 1.20796 0.96105 0.99520 0.92249 0.91259 0.91901 0.93000 0.79757 0.93292 0.90772 0.90450 0.91160 0.91503 0.87419 0.87573 0.84298 0.83657 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.10 37.16 0.34 -2.15 16 2 C 0.13 2.13 3.21 -66.95 -0.21 1.91 16 3 H 0.07 1.41 7.69 -51.93 -0.40 1.01 16 4 C 0.18 3.32 3.11 -66.10 -0.21 3.12 16 5 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 6 N -0.73 -17.10 5.25 -51.65 -0.27 -17.37 16 7 C -0.34 -8.91 9.98 -15.06 -0.15 -9.06 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 10 N -0.94 -28.28 13.70 55.49 0.76 -27.52 16 11 Si 1.08 24.98 29.92 -169.99 -5.09 19.90 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.16 -2.35 6.77 -24.59 -0.17 -2.52 16 16 C 0.10 1.09 6.69 -2.53 -0.02 1.07 16 17 N -0.61 -8.34 3.07 -163.01 -0.50 -8.84 16 18 C 0.53 7.01 7.64 -10.98 -0.08 6.92 16 19 O -0.53 -9.16 15.08 5.56 0.08 -9.08 16 20 C -0.10 -0.85 4.84 -29.04 -0.14 -0.99 16 21 C -0.06 -0.56 4.37 -104.62 -0.46 -1.02 16 22 C -0.07 -0.62 9.70 -39.58 -0.38 -1.01 16 23 C -0.14 -1.25 10.03 -39.52 -0.40 -1.65 16 24 C 0.11 1.12 7.28 -39.39 -0.29 0.83 16 25 F -0.13 -1.44 16.84 2.25 0.04 -1.40 16 26 C -0.07 -0.76 6.33 -39.44 -0.25 -1.01 16 27 Cl -0.05 -0.54 28.62 -51.86 -1.48 -2.02 16 28 C -0.07 -0.67 9.48 -39.56 -0.38 -1.04 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.37 9.15 6.34 -40.82 -0.26 8.89 16 33 H 0.26 7.59 6.77 -40.82 -0.28 7.32 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.11 0.70 7.79 -51.93 -0.40 0.29 16 39 H 0.11 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -32.35 369.40 -9.28 -41.63 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.50 Total: 6.98 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.88 Total: -7.84 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.01 Total: -53.73 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.09 Total: 19.90 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.35 -9.28 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987065428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.777 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds