Wall clock time and date at job start Sat Apr 11 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.00063 * 2 1 4 4 C 1.54323 * 109.88724 * 121.09615 * 2 1 3 5 5 H 1.09005 * 110.86863 * 23.17730 * 4 2 1 6 6 N 1.46498 * 110.71924 * 259.97540 * 4 2 1 7 7 C 1.36943 * 119.99727 * 160.02217 * 6 4 2 8 8 H 1.07998 * 120.00392 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99586 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00460 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99694 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 60.00129 * 11 9 7 14 14 H 1.48500 * 109.47454 * 300.00122 * 11 9 7 15 15 C 1.55150 * 102.94459 * 141.60848 * 4 2 1 16 16 C 1.54911 * 101.58513 * 324.50188 * 15 4 2 17 17 N 1.47023 * 109.88175 * 238.90479 * 2 1 3 18 18 C 1.34780 * 125.64731 * 61.60781 * 17 2 1 19 19 O 1.21279 * 119.99941 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00053 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47231 * 179.97438 * 20 18 17 22 22 C 1.38273 * 119.96578 * 90.00024 * 21 20 18 23 23 C 1.38194 * 120.04440 * 179.97438 * 22 21 20 24 24 C 1.38435 * 119.98963 * 0.02596 * 23 22 21 25 25 F 1.35111 * 120.02949 * 179.97438 * 24 23 22 26 26 C 1.38550 * 119.94393 * 359.97438 * 24 23 22 27 27 Cl 1.73601 * 120.02745 * 179.97438 * 26 24 23 28 28 C 1.38216 * 119.97127 * 269.72703 * 21 20 18 29 29 H 1.09005 * 109.46766 * 298.90049 * 1 2 3 30 30 H 1.08999 * 109.47465 * 58.90411 * 1 2 3 31 31 H 1.09000 * 109.46777 * 178.90875 * 1 2 3 32 32 H 0.96998 * 120.00095 * 340.01677 * 6 4 2 33 33 H 0.97001 * 119.99952 * 359.97438 * 10 9 7 34 34 H 1.09002 * 111.00582 * 82.57083 * 15 4 2 35 35 H 1.09001 * 111.00642 * 206.38912 * 15 4 2 36 36 H 1.09000 * 110.36907 * 155.84729 * 16 15 4 37 37 H 1.09006 * 110.36438 * 278.17409 * 16 15 4 38 38 H 1.08998 * 109.46886 * 299.99949 * 20 18 17 39 39 H 1.09001 * 109.46955 * 59.99633 * 20 18 17 40 40 H 1.07996 * 119.97126 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.99880 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.99007 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 1.3065 -1.4459 1.6210 6 7 2.4555 0.1961 2.2874 7 6 2.5576 -0.2226 3.5873 8 1 2.3424 -1.2497 3.8423 9 6 2.9377 0.6733 4.5771 10 7 3.1995 1.9252 4.2665 11 14 3.0763 0.1024 6.3503 12 1 3.4964 1.2413 7.2057 13 1 4.0846 -0.9840 6.4432 14 1 1.7589 -0.4043 6.8117 15 6 3.2876 -1.5142 0.6923 16 6 2.8146 -1.8794 -0.7369 17 7 2.0300 -0.7141 -1.1839 18 6 1.8074 -0.3620 -2.4657 19 8 1.1436 0.6212 -2.7180 20 6 2.3832 -1.1900 -3.5855 21 6 1.9902 -0.5871 -4.9095 22 6 2.8011 0.3620 -5.5041 23 6 2.4426 0.9156 -6.7185 24 6 1.2705 0.5202 -7.3401 25 9 0.9189 1.0613 -8.5271 26 6 0.4582 -0.4308 -6.7439 27 17 -1.0124 -0.9276 -7.5211 28 6 0.8224 -0.9874 -5.5310 29 1 -0.3633 0.4967 0.8997 30 1 -0.3634 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 2.6485 1.1187 2.0585 33 1 3.1272 2.2218 3.3458 34 1 4.1655 -0.8688 0.6602 35 1 3.4857 -2.4107 1.2799 36 1 3.6717 -2.0338 -1.3924 37 1 2.1886 -2.7715 -0.7129 38 1 3.4698 -1.2080 -3.5023 39 1 1.9969 -2.2072 -3.5209 40 1 3.7157 0.6702 -5.0195 41 1 3.0763 1.6571 -7.1821 42 1 0.1923 -1.7323 -5.0679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987065428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:42 Heat of formation + Delta-G solvation = -67.051194 kcal Electronic energy + Delta-G solvation = -26559.854516 eV Core-core repulsion = 22479.567370 eV Total energy + Delta-G solvation = -4080.287146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05609 -41.45290 -40.22359 -38.73510 -37.63094 -36.22112 -33.99414 -33.11635 -32.25675 -32.01411 -30.67254 -28.27807 -26.66307 -24.96117 -24.27679 -24.05268 -22.78206 -21.68195 -20.11110 -19.32335 -18.87016 -18.09050 -17.86255 -17.42275 -16.95150 -16.84193 -16.64898 -16.10666 -15.79048 -15.43083 -15.19220 -15.00895 -14.82185 -14.62983 -14.46129 -14.13195 -13.92419 -13.74537 -13.52499 -13.16997 -13.05693 -12.89913 -12.70989 -12.66126 -12.49981 -12.38540 -12.32963 -12.11861 -12.01013 -11.86817 -11.67838 -11.26709 -10.94089 -10.83779 -10.05115 -9.68152 -9.65881 -9.12361 -8.37170 -5.32843 -0.15189 0.01919 0.90622 1.60861 1.63980 1.70548 1.86051 1.88659 2.41903 2.73786 3.00566 3.38793 3.46654 3.52325 3.61165 3.66901 3.80962 3.98418 4.03954 4.08301 4.11604 4.27458 4.31802 4.37477 4.44934 4.56347 4.60972 4.63807 4.71571 4.81589 4.84472 4.90718 4.98637 5.01483 5.16284 5.20467 5.29724 5.32187 5.42415 5.62282 5.63501 6.49092 6.58800 7.07322 7.16702 7.96503 8.09839 9.14179 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.002077 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.289641 B =13475.857353 C =13614.380640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.135 3.865 3 H 0.041 0.959 4 C 0.173 3.827 5 H 0.065 0.935 6 N -0.743 5.743 7 C -0.323 4.323 8 H 0.074 0.926 9 C -0.106 4.106 10 N -0.978 5.978 11 Si 1.127 2.873 12 H -0.299 1.299 13 H -0.274 1.274 14 H -0.278 1.278 15 C -0.149 4.149 16 C 0.105 3.895 17 N -0.610 5.610 18 C 0.523 3.477 19 O -0.580 6.580 20 C -0.088 4.088 21 C -0.067 4.067 22 C -0.073 4.073 23 C -0.140 4.140 24 C 0.086 3.914 25 F -0.138 7.138 26 C -0.086 4.086 27 Cl -0.058 7.058 28 C -0.074 4.074 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.357 0.643 33 H 0.242 0.758 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -12.284 -23.411 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.059 0.941 4 C 0.063 3.937 5 H 0.083 0.917 6 N -0.384 5.384 7 C -0.455 4.455 8 H 0.092 0.908 9 C -0.297 4.297 10 N -0.626 5.626 11 Si 0.952 3.048 12 H -0.225 1.225 13 H -0.200 1.200 14 H -0.204 1.204 15 C -0.189 4.189 16 C -0.016 4.016 17 N -0.343 5.343 18 C 0.313 3.687 19 O -0.460 6.460 20 C -0.127 4.127 21 C -0.068 4.068 22 C -0.091 4.091 23 C -0.158 4.158 24 C 0.067 3.933 25 F -0.116 7.116 26 C -0.114 4.114 27 Cl -0.029 7.029 28 C -0.092 4.092 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.189 0.811 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.178 0.822 41 H 0.183 0.817 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.519 -11.548 -22.131 24.968 hybrid contribution -0.776 0.592 -1.754 2.007 sum -1.295 -10.956 -23.885 26.310 Atomic orbital electron populations 1.21927 0.94525 1.02408 1.01365 1.21522 0.94606 0.95269 0.85624 0.94072 1.21395 0.95144 0.90889 0.86232 0.91728 1.42556 1.82600 1.08839 1.04403 1.20338 1.42041 0.97021 0.86071 0.90808 1.27178 1.00108 0.94199 1.08246 1.71000 1.54725 1.17395 1.19519 0.82638 0.77047 0.74545 0.70594 1.22498 1.19965 1.20420 1.23356 0.98623 1.01066 0.95882 1.22584 0.96181 0.87871 0.95003 1.48636 1.52358 1.29060 1.04285 1.20891 0.80027 0.85181 0.82577 1.90721 1.41861 1.29669 1.83704 1.20740 1.04916 1.00370 0.86646 1.19520 0.94319 0.97319 0.95606 1.21330 1.00502 0.93714 0.93538 1.21369 0.95379 1.02287 0.96791 1.17697 0.95964 0.96172 0.83517 1.91511 1.91995 1.84474 1.43653 1.21086 0.91410 1.01364 0.97498 1.98379 1.33617 1.90366 1.80506 1.21007 0.96487 0.99770 0.91953 0.93039 0.92804 0.91136 0.81133 0.94718 0.92714 0.89596 0.87077 0.88592 0.84246 0.84347 0.82235 0.81720 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.10 71.98 0.65 -3.98 16 2 C 0.13 4.46 3.21 45.34 0.15 4.60 16 3 H 0.04 1.63 7.69 -2.39 -0.02 1.61 16 4 C 0.17 6.20 3.11 46.18 0.14 6.34 16 5 H 0.06 2.33 7.84 -2.38 -0.02 2.31 16 6 N -0.74 -35.59 5.25 -317.34 -1.67 -37.26 16 7 C -0.32 -17.20 9.98 84.03 0.84 -16.36 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 C -0.11 -6.00 5.50 84.86 0.47 -5.53 16 10 N -0.98 -60.64 13.70 21.65 0.30 -60.34 16 11 Si 1.13 50.30 29.92 68.60 2.05 52.35 16 12 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 15 C -0.15 -4.14 6.77 31.98 0.22 -3.93 16 16 C 0.11 1.88 6.69 86.86 0.58 2.47 16 17 N -0.61 -15.05 3.07 -788.04 -2.42 -17.46 16 18 C 0.52 12.48 7.64 87.66 0.67 13.15 16 19 O -0.58 -19.33 15.08 -3.03 -0.05 -19.37 16 20 C -0.09 -1.11 4.84 29.10 0.14 -0.97 16 21 C -0.07 -1.08 4.37 -19.86 -0.09 -1.16 16 22 C -0.07 -1.10 9.70 22.27 0.22 -0.89 16 23 C -0.14 -2.27 10.03 22.31 0.22 -2.05 16 24 C 0.09 1.77 7.28 22.39 0.16 1.93 16 25 F -0.14 -3.06 16.84 44.97 0.76 -2.30 16 26 C -0.09 -1.75 6.33 22.36 0.14 -1.61 16 27 Cl -0.06 -1.16 28.62 -2.72 -0.08 -1.24 16 28 C -0.07 -1.30 9.48 22.28 0.21 -1.09 16 29 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.05 1.82 6.90 -2.39 -0.02 1.80 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 32 H 0.36 18.54 6.34 -92.71 -0.59 17.95 16 33 H 0.24 15.07 6.77 -92.71 -0.63 14.44 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.11 1.19 7.48 -2.39 -0.02 1.18 16 37 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.14 0.95 7.79 -2.39 -0.02 0.93 16 39 H 0.14 0.93 8.08 -2.39 -0.02 0.91 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -73.86 369.40 4.23 -69.62 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.61 Total: 25.07 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 4.73 Total: -9.08 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -3.78 Total: -115.06 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.76 Total: -2.30 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.35 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -73.86 4.23 -69.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987065428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.572 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds