Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.99926 * 2 1 4 4 C 1.54335 * 109.99350 * 238.96718 * 2 1 3 5 5 H 1.09006 * 110.66564 * 337.04387 * 4 2 1 6 6 N 1.46497 * 110.85361 * 100.19455 * 4 2 1 7 7 C 1.36937 * 119.99938 * 200.15175 * 6 4 2 8 8 H 1.08005 * 120.00296 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99825 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99666 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00115 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47196 * 90.00320 * 11 9 7 13 13 H 1.48505 * 109.46949 * 210.00150 * 11 9 7 14 14 H 1.48496 * 109.47027 * 330.00110 * 11 9 7 15 15 C 1.55162 * 103.02141 * 218.66427 * 4 2 1 16 16 C 1.54907 * 101.58065 * 35.30285 * 15 4 2 17 17 N 1.47024 * 109.88699 * 121.09476 * 2 1 3 18 18 C 1.34771 * 125.64608 * 298.39897 * 17 2 1 19 19 O 1.21278 * 120.00064 * 359.71254 * 18 17 2 20 20 C 1.50709 * 119.99855 * 179.71225 * 18 17 2 21 21 C 1.50695 * 109.47107 * 179.97438 * 20 18 17 22 22 C 1.38464 * 120.02009 * 90.00275 * 21 20 18 23 23 F 1.35104 * 120.01560 * 359.97438 * 22 21 20 24 24 C 1.38440 * 119.96098 * 179.72461 * 22 21 20 25 25 C 1.38225 * 120.00741 * 0.24909 * 24 22 21 26 26 C 1.38204 * 120.03089 * 0.02562 * 25 24 22 27 27 C 1.38296 * 120.02252 * 270.23035 * 21 20 18 28 28 Cl 1.73594 * 119.99764 * 0.02817 * 27 21 20 29 29 H 1.09008 * 109.47167 * 300.35371 * 1 2 3 30 30 H 1.09000 * 109.47432 * 60.35814 * 1 2 3 31 31 H 1.09005 * 109.46844 * 180.35979 * 1 2 3 32 32 H 0.96993 * 120.00194 * 20.14518 * 6 4 2 33 33 H 0.97003 * 119.99688 * 179.97438 * 10 9 7 34 34 H 1.09000 * 111.00084 * 277.23054 * 15 4 2 35 35 H 1.09002 * 111.03662 * 153.39124 * 15 4 2 36 36 H 1.09002 * 110.36640 * 204.15309 * 16 15 4 37 37 H 1.08995 * 110.36846 * 81.83229 * 16 15 4 38 38 H 1.08998 * 109.46807 * 60.00016 * 20 18 17 39 39 H 1.08993 * 109.46881 * 300.00329 * 20 18 17 40 40 H 1.08006 * 119.99291 * 180.23070 * 24 22 21 41 41 H 1.07992 * 119.98345 * 180.02562 * 25 24 22 42 42 H 1.08000 * 119.97641 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3066 -1.4405 -1.6226 6 7 2.4636 0.1969 -2.2863 7 6 2.5653 -0.2212 -3.5863 8 1 2.3466 -1.2474 -3.8423 9 6 2.9505 0.6738 -4.5750 10 7 3.0487 0.2718 -5.8245 11 14 3.3295 2.4485 -4.1323 12 1 4.7710 2.5789 -3.8003 13 1 3.0058 3.3263 -5.2856 14 1 2.5129 2.8512 -2.9592 15 6 3.2864 -1.5183 -0.6915 16 6 2.8100 -1.8825 0.7367 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3620 2.4656 19 8 1.1475 0.6237 2.7179 20 6 2.3785 -1.1934 3.5855 21 6 1.9875 -0.5892 4.9095 22 6 0.8126 -0.9799 5.5293 23 9 0.0159 -1.9028 4.9472 24 6 0.4575 -0.4282 6.7484 25 6 1.2729 0.5159 7.3437 26 6 2.4427 0.9101 6.7222 27 6 2.7995 0.3594 5.5039 28 17 4.2694 0.8550 4.7245 29 1 -0.3634 0.5194 0.8869 30 1 -0.3634 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0065 32 1 2.6603 1.1185 -2.0565 33 1 3.3176 0.8973 -6.5155 34 1 4.1669 -0.8767 -0.6580 35 1 3.4813 -2.4155 -1.2790 36 1 3.6656 -2.0411 1.3931 37 1 2.1802 -2.7717 0.7114 38 1 3.4651 -1.2159 3.5035 39 1 1.9880 -2.2088 3.5196 40 1 -0.4570 -0.7354 7.2341 41 1 0.9957 0.9457 8.2948 42 1 3.0793 1.6476 7.1884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987400160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -42.968858 kcal Electronic energy + Delta-G solvation = -27311.942111 eV Core-core repulsion = 23232.699254 eV Total energy + Delta-G solvation = -4079.242858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.24453 -40.33713 -39.35879 -37.49441 -36.77736 -34.28324 -33.36444 -31.70472 -31.00379 -30.78974 -29.78114 -27.73800 -25.38053 -23.32771 -23.16290 -22.70240 -21.89212 -20.24941 -18.98272 -18.06171 -17.60615 -17.22732 -17.07472 -16.35359 -16.03726 -15.80014 -15.13737 -14.93761 -14.71318 -14.13665 -14.03051 -13.83179 -13.74258 -13.44715 -13.36925 -12.83814 -12.73564 -12.66736 -12.31579 -12.10400 -11.93521 -11.81665 -11.76726 -11.67386 -11.32341 -11.21471 -11.16892 -10.91358 -10.65491 -10.37195 -10.07279 -9.80289 -9.64055 -9.15788 -9.05241 -8.98232 -8.50000 -7.35597 -5.83274 -3.20474 0.61391 0.67670 1.71751 2.69151 2.88978 3.21021 3.35213 3.39207 3.43569 3.87117 4.11338 4.34844 4.45023 4.54161 4.54770 4.79631 4.90921 4.96259 5.04082 5.10968 5.19976 5.24785 5.39183 5.47789 5.50878 5.57841 5.63106 5.65629 5.70337 5.79839 5.80657 5.87645 5.99164 6.19430 6.31956 6.33835 6.50252 6.51597 6.60096 6.79717 7.64850 7.90898 8.23945 8.35283 9.12019 9.84711 10.03062 11.34468 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018725 B = 0.002905 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.969531 B = 9637.313577 C =10204.304688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.074 0.926 4 C 0.181 3.819 5 H 0.073 0.927 6 N -0.739 5.739 7 C -0.247 4.247 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.154 4.154 16 C 0.095 3.905 17 N -0.609 5.609 18 C 0.534 3.466 19 O -0.534 6.534 20 C -0.106 4.106 21 C -0.089 4.089 22 C 0.126 3.874 23 F -0.129 7.129 24 C -0.150 4.150 25 C -0.080 4.080 26 C -0.121 4.121 27 C 0.003 3.997 28 Cl -0.051 7.051 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.363 0.637 33 H 0.261 0.739 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -4.115 28.620 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.091 0.909 6 N -0.381 5.381 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.578 5.578 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.195 4.195 16 C -0.028 4.028 17 N -0.343 5.343 18 C 0.322 3.678 19 O -0.411 6.411 20 C -0.145 4.145 21 C -0.091 4.091 22 C 0.106 3.894 23 F -0.108 7.108 24 C -0.168 4.168 25 C -0.098 4.098 26 C -0.140 4.140 27 C -0.024 4.024 28 Cl -0.022 7.022 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.196 0.804 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.427 -3.674 28.471 28.742 hybrid contribution 0.393 1.101 -0.060 1.170 sum -1.034 -2.573 28.411 28.546 Atomic orbital electron populations 1.22052 0.94645 1.01934 1.02712 1.21895 0.94642 0.96658 0.84552 0.90834 1.21215 0.93886 0.91325 0.86555 0.90882 1.42699 1.82427 1.08362 1.04637 1.19017 1.39470 0.97372 0.81797 0.88984 1.24656 1.01303 0.97613 0.95160 1.69698 1.53661 1.34701 0.99694 0.86596 0.78380 0.86418 0.77442 1.21011 1.21605 1.20214 1.23515 1.00941 1.02015 0.92992 1.22449 0.94763 0.88298 0.97262 1.48518 1.52404 1.28588 1.04761 1.19785 0.80646 0.85301 0.82092 1.90700 1.39980 1.27290 1.83147 1.20646 1.03865 1.00456 0.89574 1.19138 0.94459 0.98751 0.96786 1.17266 0.88930 0.90554 0.92645 1.91526 1.72147 1.63103 1.83990 1.21217 1.01912 0.99044 0.94677 1.20945 0.93089 0.95838 0.99943 1.21089 0.98066 1.00906 0.93891 1.20530 0.90196 0.97107 0.94518 1.98398 1.33152 1.89993 1.80627 0.91924 0.91164 0.92773 0.80383 0.92940 0.90663 0.89996 0.91160 0.91328 0.87049 0.87338 0.84016 0.83977 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.11 37.15 0.34 -2.19 16 2 C 0.13 2.14 3.21 -66.95 -0.21 1.93 16 3 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 4 C 0.18 3.32 3.12 -66.09 -0.21 3.11 16 5 H 0.07 1.36 7.83 -51.93 -0.41 0.96 16 6 N -0.74 -16.86 5.06 -51.64 -0.26 -17.12 16 7 C -0.25 -6.69 10.46 -15.06 -0.16 -6.85 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 10 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 11 Si 0.88 21.89 27.74 -169.99 -4.71 17.18 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 15 C -0.15 -2.37 6.77 -24.58 -0.17 -2.54 16 16 C 0.10 1.17 6.69 -2.53 -0.02 1.15 16 17 N -0.61 -9.01 3.06 -163.01 -0.50 -9.51 16 18 C 0.53 8.00 7.63 -10.98 -0.08 7.92 16 19 O -0.53 -9.76 15.08 5.56 0.08 -9.67 16 20 C -0.11 -1.20 4.26 -29.03 -0.12 -1.32 16 21 C -0.09 -1.02 4.38 -104.52 -0.46 -1.48 16 22 C 0.13 1.38 7.24 -39.42 -0.29 1.09 16 23 F -0.13 -1.53 16.48 2.25 0.04 -1.49 16 24 C -0.15 -1.25 10.03 -39.51 -0.40 -1.65 16 25 C -0.08 -0.56 10.04 -39.60 -0.40 -0.96 16 26 C -0.12 -1.01 9.83 -39.54 -0.39 -1.39 16 27 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 28 Cl -0.05 -0.55 27.30 -51.86 -1.42 -1.97 16 29 H 0.06 1.07 6.89 -51.92 -0.36 0.71 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.36 8.34 5.38 -40.82 -0.22 8.12 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.10 6.62 -51.93 -0.34 0.76 16 39 H 0.11 1.04 7.64 -51.93 -0.40 0.65 16 40 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -32.84 364.77 -8.88 -41.72 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.49 Total: 6.44 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.90 Total: -3.23 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.01 Total: -54.48 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.42 Total: -1.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.84 -8.88 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987400160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.246 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds