Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.99926 * 2 1 4 4 C 1.54335 * 109.99350 * 238.96718 * 2 1 3 5 5 H 1.09006 * 110.66564 * 337.04387 * 4 2 1 6 6 N 1.46497 * 110.85361 * 100.19455 * 4 2 1 7 7 C 1.36937 * 119.99938 * 200.15175 * 6 4 2 8 8 H 1.08005 * 120.00296 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99825 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99666 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00115 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47196 * 90.00320 * 11 9 7 13 13 H 1.48505 * 109.46949 * 210.00150 * 11 9 7 14 14 H 1.48496 * 109.47027 * 330.00110 * 11 9 7 15 15 C 1.55162 * 103.02141 * 218.66427 * 4 2 1 16 16 C 1.54907 * 101.58065 * 35.30285 * 15 4 2 17 17 N 1.47024 * 109.88699 * 121.09476 * 2 1 3 18 18 C 1.34771 * 125.64608 * 298.39897 * 17 2 1 19 19 O 1.21278 * 120.00064 * 359.71254 * 18 17 2 20 20 C 1.50709 * 119.99855 * 179.71225 * 18 17 2 21 21 C 1.50695 * 109.47107 * 179.97438 * 20 18 17 22 22 C 1.38464 * 120.02009 * 90.00275 * 21 20 18 23 23 F 1.35104 * 120.01560 * 359.97438 * 22 21 20 24 24 C 1.38440 * 119.96098 * 179.72461 * 22 21 20 25 25 C 1.38225 * 120.00741 * 0.24909 * 24 22 21 26 26 C 1.38204 * 120.03089 * 0.02562 * 25 24 22 27 27 C 1.38296 * 120.02252 * 270.23035 * 21 20 18 28 28 Cl 1.73594 * 119.99764 * 0.02817 * 27 21 20 29 29 H 1.09008 * 109.47167 * 300.35371 * 1 2 3 30 30 H 1.09000 * 109.47432 * 60.35814 * 1 2 3 31 31 H 1.09005 * 109.46844 * 180.35979 * 1 2 3 32 32 H 0.96993 * 120.00194 * 20.14518 * 6 4 2 33 33 H 0.97003 * 119.99688 * 179.97438 * 10 9 7 34 34 H 1.09000 * 111.00084 * 277.23054 * 15 4 2 35 35 H 1.09002 * 111.03662 * 153.39124 * 15 4 2 36 36 H 1.09002 * 110.36640 * 204.15309 * 16 15 4 37 37 H 1.08995 * 110.36846 * 81.83229 * 16 15 4 38 38 H 1.08998 * 109.46807 * 60.00016 * 20 18 17 39 39 H 1.08993 * 109.46881 * 300.00329 * 20 18 17 40 40 H 1.08006 * 119.99291 * 180.23070 * 24 22 21 41 41 H 1.07992 * 119.98345 * 180.02562 * 25 24 22 42 42 H 1.08000 * 119.97641 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3066 -1.4405 -1.6226 6 7 2.4636 0.1969 -2.2863 7 6 2.5653 -0.2212 -3.5863 8 1 2.3466 -1.2474 -3.8423 9 6 2.9505 0.6738 -4.5750 10 7 3.0487 0.2718 -5.8245 11 14 3.3295 2.4485 -4.1323 12 1 4.7710 2.5789 -3.8003 13 1 3.0058 3.3263 -5.2856 14 1 2.5129 2.8512 -2.9592 15 6 3.2864 -1.5183 -0.6915 16 6 2.8100 -1.8825 0.7367 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3620 2.4656 19 8 1.1475 0.6237 2.7179 20 6 2.3785 -1.1934 3.5855 21 6 1.9875 -0.5892 4.9095 22 6 0.8126 -0.9799 5.5293 23 9 0.0159 -1.9028 4.9472 24 6 0.4575 -0.4282 6.7484 25 6 1.2729 0.5159 7.3437 26 6 2.4427 0.9101 6.7222 27 6 2.7995 0.3594 5.5039 28 17 4.2694 0.8550 4.7245 29 1 -0.3634 0.5194 0.8869 30 1 -0.3634 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0065 32 1 2.6603 1.1185 -2.0565 33 1 3.3176 0.8973 -6.5155 34 1 4.1669 -0.8767 -0.6580 35 1 3.4813 -2.4155 -1.2790 36 1 3.6656 -2.0411 1.3931 37 1 2.1802 -2.7717 0.7114 38 1 3.4651 -1.2159 3.5035 39 1 1.9880 -2.2088 3.5196 40 1 -0.4570 -0.7354 7.2341 41 1 0.9957 0.9457 8.2948 42 1 3.0793 1.6476 7.1884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987400160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -62.376986 kcal Electronic energy + Delta-G solvation = -27312.783711 eV Core-core repulsion = 23232.699254 eV Total energy + Delta-G solvation = -4080.084457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.03817 -41.45130 -40.19342 -38.77619 -37.52818 -36.04017 -34.27606 -33.48355 -32.29914 -31.45678 -31.29543 -28.63877 -26.93264 -24.63935 -24.14087 -23.89898 -22.84786 -21.72837 -20.27333 -19.46494 -18.78817 -18.25994 -17.97491 -17.45233 -16.93113 -16.67744 -16.40446 -16.10881 -15.86821 -15.76646 -15.27140 -14.77611 -14.70981 -14.61113 -14.53368 -14.25959 -13.92659 -13.81576 -13.53306 -13.48077 -13.23244 -13.03991 -12.76439 -12.65074 -12.54860 -12.46849 -12.39874 -12.25452 -12.03104 -11.93374 -11.82705 -11.57022 -11.03374 -10.93357 -9.89233 -9.74946 -9.71344 -9.34054 -8.03564 -5.37485 -0.06368 -0.00737 0.97713 1.37411 1.37865 1.44950 1.56015 1.86464 2.42989 2.46178 3.18324 3.25945 3.34671 3.45652 3.51934 3.65524 3.74659 3.87290 3.96196 4.10717 4.19822 4.29480 4.31190 4.32812 4.38720 4.43719 4.49760 4.63233 4.70783 4.83688 4.88033 4.98437 5.01476 5.07350 5.18262 5.19607 5.20714 5.29673 5.40814 5.69395 5.76186 6.20179 6.50297 7.03815 7.08621 7.79310 7.97093 9.17367 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018725 B = 0.002905 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.969531 B = 9637.313577 C =10204.304688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 H 0.052 0.948 4 C 0.173 3.827 5 H 0.070 0.930 6 N -0.745 5.745 7 C -0.223 4.223 8 H 0.067 0.933 9 C -0.057 4.057 10 N -0.979 5.979 11 Si 0.945 3.055 12 H -0.279 1.279 13 H -0.296 1.296 14 H -0.260 1.260 15 C -0.147 4.147 16 C 0.102 3.898 17 N -0.610 5.610 18 C 0.531 3.469 19 O -0.571 6.571 20 C -0.098 4.098 21 C -0.111 4.111 22 C 0.101 3.899 23 F -0.140 7.140 24 C -0.149 4.149 25 C -0.069 4.069 26 C -0.122 4.122 27 C -0.014 4.014 28 Cl -0.061 7.061 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.363 0.637 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.165 0.835 41 H 0.181 0.819 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.060 -4.227 32.038 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.028 3.972 3 H 0.070 0.930 4 C 0.064 3.936 5 H 0.088 0.912 6 N -0.387 5.387 7 C -0.354 4.354 8 H 0.085 0.915 9 C -0.249 4.249 10 N -0.630 5.630 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.223 1.223 14 H -0.185 1.185 15 C -0.188 4.188 16 C -0.020 4.020 17 N -0.344 5.344 18 C 0.321 3.679 19 O -0.451 6.451 20 C -0.137 4.137 21 C -0.113 4.113 22 C 0.082 3.918 23 F -0.119 7.119 24 C -0.167 4.167 25 C -0.087 4.087 26 C -0.140 4.140 27 C -0.041 4.041 28 Cl -0.032 7.032 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.196 0.804 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.182 0.818 41 H 0.198 0.802 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.332 -3.823 31.956 32.211 hybrid contribution 0.303 1.072 -1.010 1.503 sum -1.029 -2.751 30.946 31.085 Atomic orbital electron populations 1.21959 0.94244 1.02476 1.01809 1.21610 0.94873 0.95630 0.85099 0.92956 1.21398 0.95258 0.90881 0.86036 0.91171 1.42700 1.82748 1.09181 1.04098 1.18983 1.36818 0.96103 0.83510 0.91470 1.25359 1.02610 1.01808 0.95110 1.69854 1.56185 1.36069 1.00879 0.85565 0.78432 0.81402 0.77310 1.20546 1.22282 1.18488 1.23353 0.98896 1.01436 0.95089 1.22584 0.96035 0.87920 0.95471 1.48574 1.52516 1.29007 1.04266 1.20442 0.79917 0.85066 0.82492 1.90676 1.41678 1.29054 1.83675 1.20636 1.04433 1.00475 0.88181 1.19231 0.95235 0.99761 0.97043 1.17594 0.89096 0.91282 0.93851 1.91490 1.72428 1.63617 1.84366 1.21594 1.02802 0.98601 0.93744 1.21411 0.91846 0.94577 1.00846 1.21467 0.98727 1.00762 0.93092 1.20748 0.90116 0.97696 0.95515 1.98388 1.33753 1.90099 1.81003 0.92815 0.91993 0.91486 0.80414 0.93342 0.91729 0.89475 0.87950 0.88899 0.85679 0.85571 0.81780 0.80189 0.82118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.11 71.98 0.66 -4.07 16 2 C 0.13 4.42 3.21 45.34 0.15 4.56 16 3 H 0.05 1.98 7.69 -2.38 -0.02 1.96 16 4 C 0.17 6.23 3.12 46.19 0.14 6.37 16 5 H 0.07 2.58 7.83 -2.38 -0.02 2.56 16 6 N -0.74 -33.85 5.06 -317.30 -1.60 -35.45 16 7 C -0.22 -12.25 10.46 84.03 0.88 -11.37 16 8 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 9 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 10 N -0.98 -61.80 13.97 21.65 0.30 -61.50 16 11 Si 0.94 45.73 27.74 68.60 1.90 47.63 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 14 H -0.26 -11.70 6.52 99.48 0.65 -11.06 16 15 C -0.15 -4.30 6.77 31.99 0.22 -4.09 16 16 C 0.10 2.21 6.69 86.85 0.58 2.79 16 17 N -0.61 -17.04 3.06 -788.04 -2.41 -19.46 16 18 C 0.53 15.21 7.63 87.66 0.67 15.88 16 19 O -0.57 -20.63 15.08 -3.02 -0.05 -20.67 16 20 C -0.10 -2.03 4.26 29.10 0.12 -1.91 16 21 C -0.11 -2.37 4.38 -19.80 -0.09 -2.45 16 22 C 0.10 2.06 7.24 22.37 0.16 2.22 16 23 F -0.14 -3.16 16.48 44.97 0.74 -2.41 16 24 C -0.15 -2.09 10.03 22.31 0.22 -1.87 16 25 C -0.07 -0.73 10.04 22.26 0.22 -0.51 16 26 C -0.12 -1.71 9.83 22.30 0.22 -1.49 16 27 C -0.01 -0.27 6.31 22.32 0.14 -0.13 16 28 Cl -0.06 -1.26 27.30 -2.72 -0.07 -1.33 16 29 H 0.05 1.83 6.89 -2.38 -0.02 1.81 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.36 16.47 5.38 -92.71 -0.50 15.97 16 33 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.10 1.64 7.48 -2.39 -0.02 1.62 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.13 2.19 6.62 -2.39 -0.02 2.18 16 39 H 0.13 2.12 7.64 -2.39 -0.02 2.10 16 40 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 42 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -73.18 364.77 4.07 -69.11 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.50 Total: 22.99 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 4.76 Total: 1.09 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -3.72 Total: -116.40 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.74 Total: -2.41 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -73.18 4.07 -69.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987400160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.733 kcal (2) G-P(sol) polarization free energy of solvation -73.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds