Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.32630 * 2 1 4 4 C 1.54918 * 110.36876 * 122.34993 * 2 1 3 5 5 C 1.55148 * 101.58167 * 155.84990 * 4 2 1 6 6 H 1.08998 * 110.72220 * 82.86619 * 5 4 2 7 7 N 1.46503 * 110.87175 * 206.06387 * 5 4 2 8 8 C 1.36936 * 120.00397 * 200.06473 * 7 5 4 9 9 H 1.08001 * 119.99567 * 359.97438 * 8 7 5 10 10 C 1.38806 * 120.00243 * 180.02562 * 8 7 5 11 11 N 1.31626 * 120.00195 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00175 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47174 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47398 * 119.99835 * 12 10 8 15 15 H 1.48503 * 109.47012 * 239.99689 * 12 10 8 16 16 C 1.54327 * 102.94463 * 324.49998 * 5 4 2 17 17 N 1.47022 * 107.27058 * 22.19156 * 16 5 4 18 18 C 1.34776 * 125.64897 * 181.04116 * 17 16 5 19 19 O 1.21283 * 120.00013 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99579 * 0.02562 * 18 17 16 21 21 C 1.50708 * 109.46796 * 180.02562 * 20 18 17 22 22 C 1.38243 * 119.97789 * 264.72859 * 21 20 18 23 23 C 1.38180 * 120.03823 * 179.72360 * 22 21 20 24 24 C 1.38490 * 120.00114 * 0.55131 * 23 22 21 25 25 F 1.35094 * 120.02245 * 179.75005 * 24 23 22 26 26 C 1.38413 * 119.95915 * 359.72032 * 24 23 22 27 27 C 1.38336 * 119.98114 * 85.00080 * 21 20 18 28 28 Cl 1.73600 * 120.00293 * 359.97438 * 27 21 20 29 29 H 1.09002 * 109.47153 * 180.78493 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.78684 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.78665 * 1 2 3 32 32 H 1.08997 * 110.99971 * 273.92470 * 4 2 1 33 33 H 1.08998 * 111.00095 * 37.77321 * 4 2 1 34 34 H 0.97002 * 119.99615 * 20.06416 * 7 5 4 35 35 H 0.96989 * 120.00369 * 180.02562 * 11 10 8 36 36 H 1.09006 * 109.87630 * 262.77691 * 16 5 4 37 37 H 1.08995 * 110.01000 * 141.68729 * 16 5 4 38 38 H 1.09000 * 109.47200 * 299.99946 * 20 18 17 39 39 H 1.08994 * 109.47321 * 60.00622 * 20 18 17 40 40 H 1.08005 * 119.98265 * 359.97438 * 22 21 20 41 41 H 1.08004 * 120.00452 * 180.24973 * 23 22 21 42 42 H 1.07997 * 120.02373 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7771 1.2269 5 6 3.4777 -1.2004 0.7331 6 1 4.1945 -0.3910 0.8719 7 7 3.9290 -2.4132 1.4199 8 6 5.2619 -2.7256 1.4531 9 1 5.9803 -2.0782 0.9724 10 6 5.6894 -3.8750 2.1034 11 7 4.8137 -4.6643 2.6888 12 14 7.5076 -4.3008 2.1492 13 1 8.2782 -3.2597 1.4232 14 1 7.9661 -4.3629 3.5602 15 1 7.7237 -5.6189 1.5001 16 6 3.2494 -1.4760 -0.7681 17 7 2.0431 -0.7373 -1.1690 18 6 1.4971 -0.7342 -2.4012 19 8 0.4963 -0.0847 -2.6194 20 6 2.1301 -1.5379 -3.5077 21 6 1.3322 -1.3641 -4.7744 22 6 0.3621 -2.2894 -5.1121 23 6 -0.3741 -2.1282 -6.2703 24 6 -0.1326 -1.0455 -7.0994 25 9 -0.8487 -0.8902 -8.2343 26 6 0.8425 -0.1221 -6.7641 27 6 1.5748 -0.2819 -5.6013 28 17 2.7976 0.8759 -5.1795 29 1 -0.3633 -1.0276 0.0141 30 1 -0.3633 0.5016 -0.8970 31 1 -0.3634 0.5260 0.8829 32 1 2.1398 -0.1284 2.1000 33 1 1.4511 -1.6494 1.4393 34 1 3.2837 -2.9948 1.8513 35 1 5.1124 -5.4672 3.1435 36 1 3.1014 -2.5437 -0.9306 37 1 4.1060 -1.1285 -1.3456 38 1 3.1504 -1.1908 -3.6710 39 1 2.1448 -2.5915 -3.2290 40 1 0.1768 -3.1365 -4.4683 41 1 -1.1346 -2.8492 -6.5316 42 1 1.0314 0.7228 -7.4096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989404412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = -48.331163 kcal Electronic energy + Delta-G solvation = -26890.273129 eV Core-core repulsion = 22810.797744 eV Total energy + Delta-G solvation = -4079.475385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.21020 -40.33081 -39.26298 -37.29321 -36.67889 -34.22195 -33.09843 -31.55249 -31.35545 -31.20072 -28.48878 -27.39716 -25.35327 -23.97080 -23.45263 -22.65546 -21.30550 -20.31249 -18.76634 -18.08168 -17.35581 -17.06712 -16.74891 -16.18614 -15.89081 -15.84227 -15.10858 -14.81707 -14.75559 -14.16842 -14.03760 -13.75610 -13.71639 -13.47659 -13.27169 -12.93506 -12.71429 -12.35752 -12.27080 -12.02060 -11.87976 -11.75912 -11.58874 -11.49964 -11.26692 -11.12889 -11.05607 -10.83812 -10.70846 -10.34761 -10.06689 -9.81023 -9.50847 -9.25289 -9.06351 -8.80703 -8.34150 -7.15471 -5.90525 -3.21764 0.69529 0.78985 1.81132 2.80197 2.98937 3.34506 3.35829 3.41992 3.43627 3.92641 4.32193 4.42028 4.46587 4.57619 4.68592 4.82675 5.06894 5.10972 5.17754 5.20055 5.27559 5.42465 5.45566 5.54302 5.59283 5.61743 5.67108 5.78519 5.80815 5.85703 6.01376 6.06967 6.10116 6.18281 6.38631 6.41195 6.44121 6.47276 6.68347 6.82226 7.58540 7.79434 8.26695 8.36452 9.39066 9.92589 10.27367 11.31414 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.002728 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.935469 B =10259.734583 C =10859.285088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.136 4.136 5 C 0.172 3.828 6 H 0.065 0.935 7 N -0.713 5.713 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.071 3.929 17 N -0.608 5.608 18 C 0.534 3.466 19 O -0.541 6.541 20 C -0.107 4.107 21 C -0.058 4.058 22 C -0.066 4.066 23 C -0.147 4.147 24 C 0.107 3.893 25 F -0.135 7.135 26 C -0.147 4.147 27 C 0.007 3.993 28 Cl -0.052 7.052 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 7.744 -16.106 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.175 4.175 5 C 0.060 3.940 6 H 0.083 0.917 7 N -0.354 5.354 8 C -0.380 4.380 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.055 4.055 17 N -0.342 5.342 18 C 0.322 3.678 19 O -0.419 6.419 20 C -0.147 4.147 21 C -0.060 4.060 22 C -0.084 4.084 23 C -0.166 4.166 24 C 0.088 3.912 25 F -0.114 7.114 26 C -0.166 4.166 27 C -0.020 4.020 28 Cl -0.023 7.023 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.221 0.779 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.198 8.168 -16.274 20.400 hybrid contribution 0.916 -0.474 0.003 1.031 sum -8.283 7.694 -16.271 19.813 Atomic orbital electron populations 1.22158 0.94331 1.02432 1.03088 1.21848 0.94757 0.95289 0.84645 0.91047 1.23138 0.97700 1.00324 0.96327 1.21154 0.93186 0.91066 0.88570 0.91708 1.42388 1.06027 1.23814 1.63126 1.19286 0.83885 1.05310 1.29476 0.90882 1.24773 0.97772 0.97563 1.00382 1.69666 1.32545 1.15245 1.40166 0.86125 0.84724 0.77998 0.77348 1.20428 1.21765 1.21760 1.23349 0.85179 0.96582 1.00353 1.48603 1.28711 1.48235 1.08669 1.19842 0.84020 0.81834 0.82060 1.90633 1.25414 1.44015 1.81868 1.20732 1.00369 1.02883 0.90676 1.19280 0.97540 0.93879 0.95263 1.20868 0.93210 0.98638 0.95672 1.21195 1.02019 0.98042 0.95307 1.17422 0.93064 0.96370 0.84374 1.91516 1.76358 1.95505 1.48018 1.20889 0.96969 1.00948 0.97818 1.20435 0.94104 0.92216 0.95285 1.98391 1.52723 1.58070 1.93086 0.92859 0.89795 0.92445 0.90190 0.90494 0.77855 0.93357 0.90789 0.92238 0.87358 0.87217 0.83913 0.84027 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.71 37.16 0.32 -1.89 16 2 C 0.14 1.95 3.77 -66.41 -0.25 1.70 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -2.05 6.12 -24.58 -0.15 -2.20 16 5 C 0.17 3.05 3.58 -66.10 -0.24 2.81 16 6 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 7 N -0.71 -16.20 5.18 -51.65 -0.27 -16.47 16 8 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 11 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 12 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C 0.07 1.13 6.24 -3.06 -0.02 1.11 16 17 N -0.61 -8.99 3.24 -163.04 -0.53 -9.52 16 18 C 0.53 7.80 7.62 -10.98 -0.08 7.72 16 19 O -0.54 -9.07 13.69 5.56 0.08 -9.00 16 20 C -0.11 -1.27 4.53 -29.03 -0.13 -1.40 16 21 C -0.06 -0.67 4.38 -104.58 -0.46 -1.13 16 22 C -0.07 -0.65 9.68 -39.60 -0.38 -1.04 16 23 C -0.15 -1.38 10.03 -39.51 -0.40 -1.77 16 24 C 0.11 1.11 7.30 -39.42 -0.29 0.83 16 25 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 26 C -0.15 -1.55 9.81 -39.48 -0.39 -1.94 16 27 C 0.01 0.08 6.31 -39.51 -0.25 -0.17 16 28 Cl -0.05 -0.60 27.40 -51.86 -1.42 -2.02 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.28 5.89 -51.93 -0.31 0.97 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 34 H 0.39 9.46 7.73 -40.82 -0.32 9.14 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.11 1.23 7.12 -51.93 -0.37 0.86 16 39 H 0.11 1.14 8.05 -51.93 -0.42 0.72 16 40 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -29.37 368.15 -9.40 -38.76 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.59 Total: 7.90 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.96 Total: -4.18 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.07 Total: -51.75 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.42 Total: -2.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.37 -9.40 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989404412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.567 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds