Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 6 6 H 1.08999 * 111.03442 * 153.58709 * 5 4 2 7 7 N 1.46503 * 111.00009 * 277.42118 * 5 4 2 8 8 C 1.36937 * 119.99923 * 198.64956 * 7 5 4 9 9 H 1.08003 * 119.99913 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99980 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00426 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99800 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47353 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47008 * 120.00397 * 12 10 8 15 15 H 1.48500 * 109.47199 * 240.00194 * 12 10 8 16 16 C 1.54906 * 101.58328 * 35.49714 * 5 4 2 17 17 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 18 18 C 1.34780 * 125.64589 * 298.39914 * 17 2 1 19 19 O 1.21275 * 120.00143 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.50699 * 109.46973 * 179.97438 * 20 18 17 22 22 C 1.38256 * 119.97974 * 100.00014 * 21 20 18 23 23 C 1.38175 * 120.03890 * 179.97438 * 22 21 20 24 24 C 1.38490 * 120.00381 * 0.02562 * 23 22 21 25 25 F 1.35101 * 120.02449 * 180.02562 * 24 23 22 26 26 C 1.38427 * 119.96047 * 0.02562 * 24 23 22 27 27 C 1.38339 * 119.95861 * 359.73077 * 26 24 23 28 28 Cl 1.73599 * 120.00139 * 180.29657 * 27 26 24 29 29 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 32 32 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 33 33 H 1.09000 * 110.72424 * 100.02040 * 4 2 1 34 34 H 0.96998 * 120.00290 * 18.65077 * 7 5 4 35 35 H 0.96993 * 120.00326 * 179.97438 * 11 10 8 36 36 H 1.09001 * 110.36496 * 204.15090 * 16 5 4 37 37 H 1.08995 * 110.45868 * 81.88076 * 16 5 4 38 38 H 1.09001 * 109.47016 * 299.99445 * 20 18 17 39 39 H 1.09000 * 109.47482 * 59.99951 * 20 18 17 40 40 H 1.08000 * 119.97595 * 359.97438 * 22 21 20 41 41 H 1.07993 * 120.00192 * 180.02562 * 23 22 21 42 42 H 1.07994 * 120.01805 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 6 3.2876 -1.5152 -0.6903 6 1 3.4858 -2.4128 -1.2761 7 7 4.4674 -0.6476 -0.6486 8 6 5.7189 -1.1973 -0.5658 9 1 5.8362 -2.2704 -0.5317 10 6 6.8367 -0.3753 -0.5257 11 7 6.6938 0.9324 -0.5667 12 14 8.5439 -1.1252 -0.4135 13 1 8.4332 -2.6057 -0.3825 14 1 9.3440 -0.7137 -1.5950 15 1 9.2119 -0.6523 0.8256 16 6 2.8145 -1.8783 0.7394 17 7 2.0301 -0.7124 1.1848 18 6 1.8074 -0.3586 2.4662 19 8 1.1436 0.6248 2.7171 20 6 2.3834 -1.1850 3.5870 21 6 1.9914 -0.5796 4.9102 22 6 0.9390 -1.1145 5.6299 23 6 0.5789 -0.5607 6.8435 24 6 1.2718 0.5310 7.3395 25 9 0.9203 1.0725 8.5263 26 6 2.3248 1.0672 6.6184 27 6 2.6872 0.5084 5.4060 28 17 4.0125 1.1751 4.5045 29 1 -0.3633 0.5206 0.8861 30 1 -0.3633 -1.0277 0.0079 31 1 -0.3634 0.5070 -0.8939 32 1 1.3051 -1.4482 -1.6163 33 1 2.3529 -0.0488 -2.0201 34 1 4.3621 0.3161 -0.6795 35 1 7.4749 1.5068 -0.5384 36 1 3.6717 -2.0318 1.3950 37 1 2.1892 -2.7708 0.7185 38 1 1.9972 -2.2024 3.5239 39 1 3.4701 -1.2031 3.5039 40 1 0.3982 -1.9656 5.2432 41 1 -0.2430 -0.9792 7.4054 42 1 2.8660 1.9183 7.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989404417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = -49.913595 kcal Electronic energy + Delta-G solvation = -27437.161989 eV Core-core repulsion = 23357.617985 eV Total energy + Delta-G solvation = -4079.544004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.09758 -40.16730 -39.13742 -37.23349 -36.38413 -33.99313 -32.91357 -31.44160 -31.26009 -31.06346 -28.46836 -27.29084 -25.47399 -23.79376 -23.31034 -22.70399 -21.37346 -19.98079 -18.59929 -17.94095 -17.31274 -16.91238 -16.81898 -16.00980 -15.78077 -15.63321 -14.93504 -14.71535 -14.45738 -14.14600 -13.96749 -13.74825 -13.58265 -13.33758 -13.18266 -12.88796 -12.66526 -12.24601 -12.11169 -12.06032 -11.74293 -11.64754 -11.40511 -11.32928 -11.16140 -10.98465 -10.84127 -10.78025 -10.64409 -10.32341 -10.01502 -9.75909 -9.54943 -9.10795 -9.05775 -8.66450 -8.21138 -7.06279 -5.85147 -3.15694 0.83657 0.92055 2.10625 2.98504 3.14423 3.37444 3.42913 3.45850 3.51413 4.04717 4.43640 4.50476 4.57974 4.68132 4.79659 4.95131 5.12197 5.19661 5.27427 5.30743 5.40344 5.50224 5.53478 5.57373 5.66420 5.73239 5.76881 5.79826 5.86864 5.89005 5.99103 6.13791 6.17932 6.22214 6.39185 6.42322 6.54082 6.58134 6.68124 6.81951 7.61624 7.95799 8.31836 8.53832 9.43979 9.99451 10.33807 11.36671 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003785 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.815929 B = 7396.062273 C = 9000.476468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.073 0.927 4 C -0.137 4.137 5 C 0.169 3.831 6 H 0.070 0.930 7 N -0.712 5.712 8 C -0.247 4.247 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.926 5.926 12 Si 0.904 3.096 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.067 3.933 17 N -0.597 5.597 18 C 0.536 3.464 19 O -0.543 6.543 20 C -0.105 4.105 21 C -0.060 4.060 22 C -0.070 4.070 23 C -0.151 4.151 24 C 0.106 3.894 25 F -0.137 7.137 26 C -0.147 4.147 27 C 0.006 3.994 28 Cl -0.035 7.035 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.093 -5.858 10.379 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.091 0.909 4 C -0.176 4.176 5 C 0.057 3.943 6 H 0.088 0.912 7 N -0.352 5.352 8 C -0.378 4.378 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.574 5.574 12 Si 0.735 3.265 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.219 1.219 16 C -0.059 4.059 17 N -0.330 5.330 18 C 0.325 3.675 19 O -0.421 6.421 20 C -0.144 4.144 21 C -0.061 4.061 22 C -0.088 4.088 23 C -0.170 4.170 24 C 0.087 3.913 25 F -0.115 7.115 26 C -0.167 4.167 27 C -0.021 4.021 28 Cl -0.005 7.005 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.166 -5.319 10.537 17.682 hybrid contribution 1.117 0.154 0.278 1.162 sum -12.049 -5.165 10.815 16.994 Atomic orbital electron populations 1.22129 0.95529 1.01606 1.02424 1.21451 0.93431 0.96757 0.84707 0.90901 1.23032 0.98133 0.99958 0.96476 1.21315 0.87029 0.94386 0.91596 0.91211 1.42343 1.00226 1.05236 1.87393 1.19241 0.83323 0.91806 1.43440 0.90938 1.24749 0.97875 0.95294 1.02457 1.69671 1.28952 1.01988 1.56742 0.86175 0.84845 0.78189 0.77285 1.20444 1.21818 1.21852 1.23403 0.94400 0.86851 1.01247 1.48353 1.51642 1.28640 1.04363 1.19757 0.80424 0.85121 0.82247 1.90672 1.40620 1.27442 1.83370 1.20702 1.04156 0.99856 0.89731 1.19300 0.95805 0.95127 0.95913 1.20807 0.95069 0.99635 0.93283 1.21128 1.01557 0.96587 0.97722 1.17434 0.96346 0.94810 0.82756 1.91509 1.91276 1.85178 1.43559 1.20936 0.98578 1.02389 0.94766 1.20582 0.93123 0.95317 0.93047 1.98460 1.44072 1.84417 1.73571 0.91603 0.92967 0.92130 0.90751 0.89863 0.78001 0.93446 0.90225 0.92695 0.87824 0.86923 0.84186 0.84228 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.10 37.16 0.34 -1.81 16 2 C 0.14 2.21 3.45 -66.95 -0.23 1.98 16 3 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 4 C -0.14 -2.02 6.05 -24.90 -0.15 -2.17 16 5 C 0.17 2.94 3.69 -65.78 -0.24 2.70 16 6 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 7 N -0.71 -16.39 5.27 -51.35 -0.27 -16.66 16 8 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 9 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 12 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 C 0.07 1.04 6.38 -2.53 -0.02 1.02 16 17 N -0.60 -9.68 3.07 -163.02 -0.50 -10.18 16 18 C 0.54 8.92 7.42 -10.98 -0.08 8.84 16 19 O -0.54 -10.48 14.99 5.56 0.08 -10.40 16 20 C -0.10 -1.41 4.30 -29.04 -0.12 -1.54 16 21 C -0.06 -0.79 4.43 -104.58 -0.46 -1.26 16 22 C -0.07 -0.75 9.67 -39.60 -0.38 -1.13 16 23 C -0.15 -1.56 10.03 -39.51 -0.40 -1.95 16 24 C 0.11 1.26 7.30 -39.42 -0.29 0.97 16 25 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 26 C -0.15 -1.88 9.81 -39.47 -0.39 -2.26 16 27 C 0.01 0.09 6.20 -39.51 -0.24 -0.15 16 28 Cl -0.03 -0.56 27.33 -51.86 -1.42 -1.98 16 29 H 0.06 1.02 6.88 -51.93 -0.36 0.66 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.90 7.85 -51.92 -0.41 0.49 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.39 9.83 7.82 -40.82 -0.32 9.51 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.08 1.34 7.48 -51.93 -0.39 0.95 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.06 8.00 -51.93 -0.42 0.65 16 39 H 0.11 1.62 7.05 -51.93 -0.37 1.25 16 40 H 0.14 1.11 8.04 -52.49 -0.42 0.69 16 41 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -30.92 369.37 -9.32 -40.24 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.60 Total: 8.45 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.92 Total: -3.56 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.05 Total: -53.22 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.42 Total: -1.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.92 -9.32 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989404417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.676 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds