Wall clock time and date at job start Sat Apr 11 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 6 6 H 1.08999 * 111.03442 * 153.58709 * 5 4 2 7 7 N 1.46503 * 111.00009 * 277.42118 * 5 4 2 8 8 C 1.36937 * 119.99923 * 198.64956 * 7 5 4 9 9 H 1.08003 * 119.99913 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99980 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00426 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99800 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47353 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47008 * 120.00397 * 12 10 8 15 15 H 1.48500 * 109.47199 * 240.00194 * 12 10 8 16 16 C 1.54906 * 101.58328 * 35.49714 * 5 4 2 17 17 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 18 18 C 1.34780 * 125.64589 * 298.39914 * 17 2 1 19 19 O 1.21275 * 120.00143 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.50699 * 109.46973 * 179.97438 * 20 18 17 22 22 C 1.38256 * 119.97974 * 100.00014 * 21 20 18 23 23 C 1.38175 * 120.03890 * 179.97438 * 22 21 20 24 24 C 1.38490 * 120.00381 * 0.02562 * 23 22 21 25 25 F 1.35101 * 120.02449 * 180.02562 * 24 23 22 26 26 C 1.38427 * 119.96047 * 0.02562 * 24 23 22 27 27 C 1.38339 * 119.95861 * 359.73077 * 26 24 23 28 28 Cl 1.73599 * 120.00139 * 180.29657 * 27 26 24 29 29 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 32 32 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 33 33 H 1.09000 * 110.72424 * 100.02040 * 4 2 1 34 34 H 0.96998 * 120.00290 * 18.65077 * 7 5 4 35 35 H 0.96993 * 120.00326 * 179.97438 * 11 10 8 36 36 H 1.09001 * 110.36496 * 204.15090 * 16 5 4 37 37 H 1.08995 * 110.45868 * 81.88076 * 16 5 4 38 38 H 1.09001 * 109.47016 * 299.99445 * 20 18 17 39 39 H 1.09000 * 109.47482 * 59.99951 * 20 18 17 40 40 H 1.08000 * 119.97595 * 359.97438 * 22 21 20 41 41 H 1.07993 * 120.00192 * 180.02562 * 23 22 21 42 42 H 1.07994 * 120.01805 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 6 3.2876 -1.5152 -0.6903 6 1 3.4858 -2.4128 -1.2761 7 7 4.4674 -0.6476 -0.6486 8 6 5.7189 -1.1973 -0.5658 9 1 5.8362 -2.2704 -0.5317 10 6 6.8367 -0.3753 -0.5257 11 7 6.6938 0.9324 -0.5667 12 14 8.5439 -1.1252 -0.4135 13 1 8.4332 -2.6057 -0.3825 14 1 9.3440 -0.7137 -1.5950 15 1 9.2119 -0.6523 0.8256 16 6 2.8145 -1.8783 0.7394 17 7 2.0301 -0.7124 1.1848 18 6 1.8074 -0.3586 2.4662 19 8 1.1436 0.6248 2.7171 20 6 2.3834 -1.1850 3.5870 21 6 1.9914 -0.5796 4.9102 22 6 0.9390 -1.1145 5.6299 23 6 0.5789 -0.5607 6.8435 24 6 1.2718 0.5310 7.3395 25 9 0.9203 1.0725 8.5263 26 6 2.3248 1.0672 6.6184 27 6 2.6872 0.5084 5.4060 28 17 4.0125 1.1751 4.5045 29 1 -0.3633 0.5206 0.8861 30 1 -0.3633 -1.0277 0.0079 31 1 -0.3634 0.5070 -0.8939 32 1 1.3051 -1.4482 -1.6163 33 1 2.3529 -0.0488 -2.0201 34 1 4.3621 0.3161 -0.6795 35 1 7.4749 1.5068 -0.5384 36 1 3.6717 -2.0318 1.3950 37 1 2.1892 -2.7708 0.7185 38 1 1.9972 -2.2024 3.5239 39 1 3.4701 -1.2031 3.5039 40 1 0.3982 -1.9656 5.2432 41 1 -0.2430 -0.9792 7.4054 42 1 2.8660 1.9183 7.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989404417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:20 Heat of formation + Delta-G solvation = -67.434583 kcal Electronic energy + Delta-G solvation = -27437.921756 eV Core-core repulsion = 23357.617985 eV Total energy + Delta-G solvation = -4080.303771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.02019 -41.35289 -40.19882 -38.56425 -37.51895 -35.74838 -33.99870 -33.11878 -32.45101 -31.99380 -30.07733 -28.33152 -26.66907 -25.68565 -24.22224 -23.84467 -22.50399 -21.33109 -19.84699 -19.20373 -18.88054 -18.09290 -17.88784 -17.31062 -16.71911 -16.69539 -16.38010 -16.00632 -15.68122 -15.51708 -15.26602 -14.88801 -14.78683 -14.66683 -14.45340 -14.21488 -13.82836 -13.43590 -13.23438 -13.17907 -13.07748 -12.88320 -12.86958 -12.66408 -12.40357 -12.29841 -12.23610 -12.14203 -12.02472 -11.94698 -11.60808 -11.44905 -11.02919 -10.78219 -10.04887 -9.65425 -9.56063 -8.93277 -7.91129 -5.19295 -0.11398 0.00843 1.02561 1.48398 1.49309 1.58404 1.72587 2.07609 2.45843 2.57918 3.12948 3.41276 3.52139 3.58958 3.63500 3.86680 3.91154 3.97035 4.04404 4.06161 4.18778 4.32752 4.42362 4.43308 4.53420 4.61815 4.74868 4.79362 4.84608 4.84741 4.89234 4.99217 5.02108 5.15757 5.22377 5.23170 5.28777 5.40215 5.57512 5.59307 5.67168 6.29732 6.70325 7.27536 7.36654 8.12792 8.34034 9.32453 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003785 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.815929 B = 7396.062273 C = 9000.476468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.135 3.865 3 H 0.032 0.968 4 C -0.122 4.122 5 C 0.155 3.845 6 H 0.086 0.914 7 N -0.727 5.727 8 C -0.228 4.228 9 H 0.087 0.913 10 C -0.075 4.075 11 N -0.971 5.971 12 Si 0.963 3.037 13 H -0.257 1.257 14 H -0.299 1.299 15 H -0.303 1.303 16 C 0.077 3.923 17 N -0.601 5.601 18 C 0.529 3.471 19 O -0.576 6.576 20 C -0.098 4.098 21 C -0.075 4.075 22 C -0.062 4.062 23 C -0.139 4.139 24 C 0.099 3.901 25 F -0.137 7.137 26 C -0.158 4.158 27 C -0.014 4.014 28 Cl -0.069 7.069 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.368 0.632 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.177 0.823 41 H 0.174 0.826 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.447 -9.346 10.753 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.050 0.950 4 C -0.160 4.160 5 C 0.045 3.955 6 H 0.104 0.896 7 N -0.366 5.366 8 C -0.360 4.360 9 H 0.105 0.895 10 C -0.267 4.267 11 N -0.622 5.622 12 Si 0.793 3.207 13 H -0.181 1.181 14 H -0.227 1.227 15 H -0.231 1.231 16 C -0.048 4.048 17 N -0.334 5.334 18 C 0.319 3.681 19 O -0.457 6.457 20 C -0.138 4.138 21 C -0.076 4.076 22 C -0.079 4.079 23 C -0.157 4.157 24 C 0.080 3.920 25 F -0.116 7.116 26 C -0.178 4.178 27 C -0.041 4.041 28 Cl -0.040 7.040 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.200 0.800 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.194 0.806 41 H 0.192 0.808 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.554 -8.885 10.908 20.973 hybrid contribution 1.705 1.203 0.190 2.096 sum -13.849 -7.682 11.098 19.338 Atomic orbital electron populations 1.22003 0.93330 1.02835 1.02151 1.21476 0.95103 0.94952 0.85319 0.94967 1.22965 0.97660 0.99951 0.95462 1.21672 0.86081 0.94348 0.93380 0.89616 1.42566 1.01372 1.05060 1.87567 1.19689 0.84311 0.92324 1.39705 0.89507 1.25477 1.01354 0.95635 1.04256 1.69838 1.29031 1.03386 1.59948 0.85218 0.80825 0.78546 0.76091 1.18134 1.22691 1.23115 1.23309 0.94710 0.87971 0.98852 1.48487 1.51499 1.28884 1.04493 1.20335 0.79927 0.84955 0.82887 1.90652 1.42272 1.28877 1.83877 1.20702 1.03148 1.01270 0.88638 1.19492 0.96754 0.95164 0.96199 1.21212 0.93827 1.00080 0.92816 1.21529 1.01476 0.95236 0.97480 1.17589 0.96322 0.95415 0.82723 1.91508 1.91208 1.85327 1.43560 1.21024 0.99301 1.02786 0.94677 1.20734 0.93169 0.96520 0.93650 1.98442 1.45955 1.85082 1.74480 0.93846 0.90774 0.90501 0.86738 0.91065 0.80037 0.94540 0.91755 0.88143 0.83952 0.88346 0.80559 0.80837 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.10 71.98 0.66 -2.98 16 2 C 0.13 4.15 3.45 45.34 0.16 4.31 16 3 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 4 C -0.12 -3.32 6.05 31.78 0.19 -3.13 16 5 C 0.15 5.06 3.69 46.38 0.17 5.23 16 6 H 0.09 2.57 8.13 -2.39 -0.02 2.55 16 7 N -0.73 -33.52 5.27 -316.38 -1.67 -35.18 16 8 C -0.23 -11.66 9.98 84.03 0.84 -10.82 16 9 H 0.09 4.11 7.83 -2.91 -0.02 4.09 16 10 C -0.08 -4.16 5.50 84.86 0.47 -3.70 16 11 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 12 Si 0.96 44.87 29.55 68.60 2.03 46.90 16 13 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 14 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 15 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 16 C 0.08 2.15 6.38 86.86 0.55 2.70 16 17 N -0.60 -18.67 3.07 -788.08 -2.42 -21.08 16 18 C 0.53 17.17 7.42 87.66 0.65 17.82 16 19 O -0.58 -22.39 14.99 -3.01 -0.05 -22.44 16 20 C -0.10 -2.49 4.30 29.10 0.13 -2.36 16 21 C -0.07 -1.87 4.43 -19.84 -0.09 -1.96 16 22 C -0.06 -1.11 9.67 22.26 0.22 -0.89 16 23 C -0.14 -2.40 10.03 22.31 0.22 -2.17 16 24 C 0.10 2.20 7.30 22.37 0.16 2.36 16 25 F -0.14 -3.06 17.27 44.97 0.78 -2.28 16 26 C -0.16 -4.05 9.81 22.34 0.22 -3.83 16 27 C -0.01 -0.40 6.20 22.32 0.14 -0.26 16 28 Cl -0.07 -2.37 27.33 -2.72 -0.07 -2.44 16 29 H 0.04 1.29 6.88 -2.39 -0.02 1.27 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.11 2.24 7.85 -2.38 -0.02 2.23 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.37 19.40 7.82 -92.71 -0.72 18.68 16 35 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.06 2.03 7.48 -2.39 -0.02 2.01 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.14 2.37 8.00 -2.39 -0.02 2.35 16 39 H 0.10 2.80 7.05 -2.39 -0.02 2.79 16 40 H 0.18 1.85 8.04 -2.91 -0.02 1.83 16 41 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 42 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -70.94 369.37 3.90 -67.04 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.33 Total: 27.94 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 4.68 Total: 0.32 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.80 Total: -115.04 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.07 Total: -2.44 kcal Total: -70.94 3.90 -67.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989404417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.394 kcal (2) G-P(sol) polarization free energy of solvation -70.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds