Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.87397 * 2 1 4 4 C 1.54321 * 109.87828 * 121.17312 * 2 1 3 5 5 C 1.55158 * 102.94158 * 141.61160 * 4 2 1 6 6 H 1.09003 * 111.00635 * 206.38486 * 5 4 2 7 7 N 1.46501 * 111.00276 * 82.56887 * 5 4 2 8 8 C 1.36942 * 119.99401 * 155.00031 * 7 5 4 9 9 H 1.07997 * 120.00623 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99404 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00356 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99639 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47463 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47091 * 120.00329 * 12 10 8 15 15 H 1.48504 * 109.47055 * 239.99796 * 12 10 8 16 16 C 1.55133 * 101.48266 * 324.33136 * 5 4 2 17 17 N 1.47023 * 109.88356 * 238.98102 * 2 1 3 18 18 C 1.34775 * 125.64659 * 61.60783 * 17 2 1 19 19 O 1.21280 * 120.00029 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99928 * 180.02562 * 18 17 2 21 21 C 1.50691 * 109.47185 * 179.97438 * 20 18 17 22 22 C 1.38270 * 119.96843 * 89.99679 * 21 20 18 23 23 C 1.38200 * 120.04719 * 180.02562 * 22 21 20 24 24 C 1.38437 * 119.98692 * 359.97438 * 23 22 21 25 25 F 1.35107 * 120.02847 * 179.97438 * 24 23 22 26 26 C 1.38553 * 119.94400 * 359.97438 * 24 23 22 27 27 Cl 1.73599 * 120.02577 * 179.97438 * 26 24 23 28 28 C 1.38218 * 119.97329 * 270.23094 * 21 20 18 29 29 H 1.08996 * 109.47262 * 179.56537 * 1 2 3 30 30 H 1.09000 * 109.47463 * 299.56904 * 1 2 3 31 31 H 1.09006 * 109.46745 * 59.56137 * 1 2 3 32 32 H 1.09000 * 110.72174 * 259.97337 * 4 2 1 33 33 H 1.09003 * 110.72240 * 23.07097 * 4 2 1 34 34 H 0.96994 * 120.00132 * 335.00079 * 7 5 4 35 35 H 0.96992 * 119.99766 * 179.97438 * 11 10 8 36 36 H 1.09004 * 110.49533 * 278.45041 * 16 5 4 37 37 H 1.09005 * 110.34037 * 156.06014 * 16 5 4 38 38 H 1.08997 * 109.47061 * 59.99254 * 20 18 17 39 39 H 1.09003 * 109.46474 * 299.99661 * 20 18 17 40 40 H 1.07993 * 119.97788 * 0.02562 * 22 21 20 41 41 H 1.07996 * 120.00149 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.98713 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 1.2417 5 6 3.2876 -1.5152 0.6904 6 1 3.4856 -2.4125 1.2768 7 7 4.4674 -0.6477 0.6486 8 6 5.7217 -1.1950 0.6972 9 1 5.8412 -2.2662 0.7660 10 6 6.8396 -0.3730 0.6581 11 7 6.6939 0.9324 0.5738 12 14 8.5506 -1.1196 0.7238 13 1 8.4425 -2.5978 0.8157 14 1 9.2982 -0.7529 -0.5059 15 1 9.2714 -0.6015 1.9143 16 6 2.8099 -1.8815 -0.7393 17 7 2.0301 -0.7125 -1.1849 18 6 1.8075 -0.3587 -2.4662 19 8 1.1430 0.6243 -2.7172 20 6 2.3834 -1.1852 -3.5870 21 6 1.9904 -0.5806 -4.9102 22 6 2.8013 0.3693 -5.5035 23 6 2.4422 0.9253 -6.7167 24 6 1.2702 0.5307 -7.3389 25 9 0.9180 1.0740 -8.5247 26 6 0.4585 -0.4220 -6.7444 27 17 -1.0120 -0.9179 -7.5224 28 6 0.8174 -0.9724 -5.5273 29 1 -0.3633 -1.0276 -0.0078 30 1 -0.3634 0.5071 0.8938 31 1 -0.3633 0.5207 -0.8861 32 1 2.3528 -0.0488 2.0200 33 1 1.3038 -1.4459 1.6181 34 1 4.3600 0.3143 0.5865 35 1 7.4751 1.5068 0.5469 36 1 2.1801 -2.7709 -0.7152 37 1 3.6656 -2.0393 -1.3959 38 1 1.9972 -2.2025 -3.5237 39 1 3.4701 -1.2032 -3.5038 40 1 3.7158 0.6770 -5.0186 41 1 3.0759 1.6675 -7.1793 42 1 0.1832 -1.7120 -5.0612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989480816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = -51.314630 kcal Electronic energy + Delta-G solvation = -26975.530341 eV Core-core repulsion = 22895.925583 eV Total energy + Delta-G solvation = -4079.604757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.09660 -40.21073 -39.16949 -37.34465 -36.69697 -34.04391 -32.89406 -31.48179 -31.29131 -31.09589 -28.52152 -27.37923 -25.50378 -23.83067 -23.37474 -22.74357 -21.40919 -20.02595 -18.64610 -17.92756 -17.38078 -16.94812 -16.82405 -16.18473 -15.89580 -15.78758 -15.03473 -14.61926 -14.28934 -14.19697 -14.01044 -13.74059 -13.56198 -13.37995 -13.19302 -12.96744 -12.74717 -12.36556 -12.24131 -12.02830 -11.82234 -11.71618 -11.55352 -11.46677 -11.19656 -11.12066 -11.02338 -10.82484 -10.70373 -10.34394 -10.06288 -9.79917 -9.60682 -9.16141 -9.11605 -8.71361 -8.28186 -7.11909 -5.90013 -3.20947 0.78552 0.90740 1.80369 2.90597 3.09655 3.34204 3.40140 3.42822 3.48275 3.90430 4.39171 4.46358 4.49952 4.74855 4.87951 4.95831 5.07377 5.13126 5.19897 5.28929 5.44997 5.46517 5.51359 5.53620 5.63455 5.66786 5.72180 5.75328 5.83896 5.91657 5.95722 6.13704 6.16727 6.24840 6.36955 6.37970 6.50286 6.53612 6.64596 6.75897 7.57432 7.89107 8.27082 8.46016 9.39141 9.94247 10.28712 11.31720 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.002893 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.007189 B = 9675.012377 C =11066.382014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.140 4.140 5 C 0.169 3.831 6 H 0.074 0.926 7 N -0.712 5.712 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.066 3.934 17 N -0.598 5.598 18 C 0.531 3.469 19 O -0.545 6.545 20 C -0.100 4.100 21 C -0.054 4.054 22 C -0.068 4.068 23 C -0.139 4.139 24 C 0.103 3.897 25 F -0.131 7.131 26 C -0.072 4.072 27 Cl -0.057 7.057 28 C -0.069 4.069 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.431 -5.678 -10.349 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.091 0.909 4 C -0.179 4.179 5 C 0.056 3.944 6 H 0.092 0.908 7 N -0.351 5.351 8 C -0.380 4.380 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.060 4.060 17 N -0.331 5.331 18 C 0.319 3.681 19 O -0.423 6.423 20 C -0.140 4.140 21 C -0.055 4.055 22 C -0.086 4.086 23 C -0.158 4.158 24 C 0.083 3.917 25 F -0.109 7.109 26 C -0.100 4.100 27 Cl -0.028 7.028 28 C -0.088 4.088 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.761 -5.248 -10.646 17.428 hybrid contribution 0.811 0.033 -0.299 0.865 sum -11.950 -5.215 -10.946 17.024 Atomic orbital electron populations 1.22134 0.95495 1.01660 1.02457 1.21469 0.93495 0.96734 0.84729 0.90871 1.23088 0.98294 1.00059 0.96437 1.21351 0.86997 0.94422 0.91582 0.90800 1.42347 1.00082 1.05510 1.87159 1.19278 0.83136 0.92042 1.43506 0.90871 1.24777 0.97979 0.95345 1.02404 1.69677 1.29018 1.02155 1.56578 0.86142 0.84683 0.78168 0.77276 1.20447 1.21818 1.21807 1.23480 0.94443 0.86833 1.01245 1.48413 1.51761 1.28489 1.04435 1.19906 0.80556 0.85255 0.82347 1.90689 1.40546 1.27682 1.83410 1.20671 1.03860 0.99848 0.89627 1.19355 0.94069 0.96861 0.95260 1.21084 0.99935 0.93979 0.93607 1.21099 0.95729 1.02233 0.96727 1.17395 0.95190 0.95639 0.83454 1.91525 1.91821 1.84226 1.43327 1.20868 0.91241 1.01043 0.96845 1.98375 1.33564 1.90420 1.80401 1.20771 0.96169 0.99639 0.92221 0.92934 0.92085 0.91612 0.89846 0.90803 0.77993 0.93382 0.92544 0.90201 0.87849 0.86965 0.84038 0.83703 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.10 37.16 0.34 -1.78 16 2 C 0.14 2.12 3.45 -66.95 -0.23 1.89 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.14 -2.01 6.07 -24.90 -0.15 -2.16 16 5 C 0.17 2.85 3.72 -65.66 -0.24 2.60 16 6 H 0.07 1.21 8.09 -51.93 -0.42 0.78 16 7 N -0.71 -15.94 5.24 -51.23 -0.27 -16.21 16 8 C -0.25 -6.25 9.96 -15.06 -0.15 -6.40 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 11 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16 12 Si 0.91 21.00 29.55 -169.99 -5.02 15.98 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.07 0.97 6.41 -2.41 -0.02 0.95 16 17 N -0.60 -9.21 3.06 -162.88 -0.50 -9.71 16 18 C 0.53 8.34 7.64 -10.98 -0.08 8.25 16 19 O -0.55 -10.19 15.07 5.56 0.08 -10.11 16 20 C -0.10 -1.20 4.83 -29.04 -0.14 -1.34 16 21 C -0.05 -0.66 4.37 -104.62 -0.46 -1.12 16 22 C -0.07 -0.81 9.70 -39.58 -0.38 -1.19 16 23 C -0.14 -1.57 10.03 -39.52 -0.40 -1.97 16 24 C 0.10 1.28 7.28 -39.39 -0.29 0.99 16 25 F -0.13 -1.65 16.84 2.25 0.04 -1.62 16 26 C -0.07 -0.88 6.33 -39.44 -0.25 -1.13 16 27 Cl -0.06 -0.64 28.62 -51.86 -1.48 -2.13 16 28 C -0.07 -0.81 9.48 -39.56 -0.38 -1.19 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.00 6.88 -51.93 -0.36 0.64 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 34 H 0.39 9.58 7.86 -40.82 -0.32 9.26 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.24 7.48 -51.93 -0.39 0.85 16 38 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 39 H 0.11 1.31 7.80 -51.93 -0.40 0.91 16 40 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -30.13 371.69 -9.40 -39.53 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.65 Total: 8.40 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.92 Total: -3.91 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.04 Total: -51.74 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.13 -9.40 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989480816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.788 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds