Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.41376 * 2 1 4 4 C 1.55126 * 110.34622 * 122.44765 * 2 1 3 5 5 C 1.55160 * 101.48530 * 156.06043 * 4 2 1 6 6 H 1.08992 * 110.87517 * 82.76959 * 5 4 2 7 7 N 1.46505 * 110.71700 * 205.97138 * 5 4 2 8 8 C 1.36934 * 119.99728 * 199.97560 * 7 5 4 9 9 H 1.07997 * 120.00302 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00030 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00158 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00225 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46962 * 90.00130 * 12 10 8 14 14 H 1.48497 * 109.47059 * 209.99736 * 12 10 8 15 15 H 1.48496 * 109.46887 * 330.00152 * 12 10 8 16 16 C 1.54326 * 102.94150 * 324.32927 * 5 4 2 17 17 N 1.47025 * 107.26839 * 22.19995 * 16 5 4 18 18 C 1.34777 * 125.64375 * 181.02269 * 17 16 5 19 19 O 1.21278 * 119.99854 * 180.02562 * 18 17 16 20 20 C 1.50703 * 120.00161 * 0.02562 * 18 17 16 21 21 C 1.50701 * 109.47064 * 180.02562 * 20 18 17 22 22 C 1.38239 * 120.00487 * 100.00192 * 21 20 18 23 23 C 1.38214 * 120.05154 * 179.97438 * 22 21 20 24 24 C 1.38258 * 120.05994 * 359.97438 * 23 22 21 25 25 C 1.38284 * 120.01111 * 359.97438 * 24 23 22 26 26 Cl 1.73602 * 120.02264 * 180.02562 * 25 24 23 27 27 C 1.38401 * 120.00644 * 279.72388 * 21 20 18 28 28 F 1.35099 * 120.03119 * 0.02562 * 27 21 20 29 29 H 1.08999 * 109.46889 * 180.83946 * 1 2 3 30 30 H 1.08999 * 109.47171 * 300.83428 * 1 2 3 31 31 H 1.08997 * 109.47641 * 60.83705 * 1 2 3 32 32 H 1.09004 * 111.19115 * 37.95386 * 4 2 1 33 33 H 1.08998 * 110.90533 * 274.03633 * 4 2 1 34 34 H 0.97001 * 119.99785 * 19.97631 * 7 5 4 35 35 H 0.96992 * 120.00620 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.88298 * 262.77829 * 16 5 4 37 37 H 1.09005 * 109.87725 * 141.60891 * 16 5 4 38 38 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 39 39 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 40 40 H 1.08002 * 119.97465 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.97271 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99976 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0693 -0.7804 1.2274 5 6 3.4798 -1.1972 0.7331 6 1 4.1954 -0.3871 0.8727 7 7 3.9321 -2.4098 1.4195 8 6 5.2653 -2.7206 1.4531 9 1 5.9833 -2.0717 0.9740 10 6 5.6940 -3.8693 2.1040 11 7 4.8191 -4.6595 2.6893 12 14 7.5126 -4.2937 2.1492 13 1 8.1343 -3.6803 3.3502 14 1 7.6754 -5.7686 2.2063 15 1 8.1737 -3.7695 0.9272 16 6 3.2524 -1.4724 -0.7683 17 7 2.0430 -0.7382 -1.1684 18 6 1.4971 -0.7361 -2.4006 19 8 0.4937 -0.0906 -2.6182 20 6 2.1335 -1.5358 -3.5082 21 6 1.3350 -1.3639 -4.7746 22 6 1.7633 -0.4797 -5.7472 23 6 1.0320 -0.3217 -6.9094 24 6 -0.1287 -1.0480 -7.1014 25 6 -0.5589 -1.9339 -6.1306 26 17 -2.0159 -2.8464 -6.3716 27 6 0.1760 -2.0954 -4.9667 28 9 -0.2406 -2.9634 -4.0190 29 1 -0.3633 -1.0276 0.0151 30 1 -0.3633 0.5267 0.8824 31 1 -0.3634 0.5007 -0.8973 32 1 1.4549 -1.6556 1.4389 33 1 2.1373 -0.1323 2.1011 34 1 3.2872 -2.9925 1.8502 35 1 5.1186 -5.4623 3.1438 36 1 3.1089 -2.5404 -0.9319 37 1 4.1080 -1.1187 -1.3437 38 1 2.1528 -2.5897 -3.2306 39 1 3.1524 -1.1843 -3.6709 40 1 2.6700 0.0880 -5.5989 41 1 1.3675 0.3696 -7.6682 42 1 -0.6992 -0.9240 -8.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989485646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -63.430333 kcal Electronic energy + Delta-G solvation = -27102.964024 eV Core-core repulsion = 23022.833890 eV Total energy + Delta-G solvation = -4080.130134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.07040 -41.38585 -40.11415 -38.66576 -37.60872 -35.94331 -34.21675 -33.24691 -32.60229 -31.43098 -30.09407 -28.70559 -26.62863 -25.80532 -23.93296 -23.78500 -22.44401 -21.73395 -19.99936 -19.17154 -18.73301 -18.07567 -17.84504 -17.47767 -17.09275 -16.83191 -16.53619 -16.06156 -15.48970 -15.48126 -15.39572 -14.92554 -14.51091 -14.42742 -14.37138 -14.27653 -13.98252 -13.68177 -13.35251 -13.29133 -13.03707 -12.93136 -12.79510 -12.72269 -12.48967 -12.43853 -12.35471 -12.13803 -12.07347 -11.96940 -11.70332 -11.53847 -11.00768 -10.66450 -9.87348 -9.72407 -9.61392 -9.05767 -7.92915 -5.23275 -0.04496 0.00529 0.94061 1.52061 1.52415 1.59160 1.60830 1.96705 2.46263 2.58899 3.06053 3.37619 3.39161 3.45622 3.76199 3.84295 3.89790 3.95137 4.00246 4.14638 4.19788 4.25850 4.33889 4.44883 4.50600 4.52407 4.63846 4.73497 4.79881 4.87164 4.90250 4.93622 5.11276 5.15893 5.16257 5.23540 5.28452 5.34085 5.53738 5.56884 5.70111 6.27534 6.55001 7.14460 7.35080 8.07070 8.30293 9.30221 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.002686 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.448371 B =10421.758517 C =10974.072114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 H 0.091 0.909 4 C -0.127 4.127 5 C 0.165 3.835 6 H 0.075 0.925 7 N -0.727 5.727 8 C -0.240 4.240 9 H 0.085 0.915 10 C -0.073 4.073 11 N -0.970 5.970 12 Si 0.970 3.030 13 H -0.289 1.289 14 H -0.302 1.302 15 H -0.264 1.264 16 C 0.085 3.915 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.567 6.567 20 C -0.098 4.098 21 C -0.099 4.099 22 C -0.076 4.076 23 C -0.105 4.105 24 C -0.084 4.084 25 C -0.090 4.090 26 Cl -0.061 7.061 27 C 0.091 3.909 28 F -0.145 7.145 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.139 0.861 40 H 0.166 0.834 41 H 0.180 0.820 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 11.743 -20.298 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.109 0.891 4 C -0.165 4.165 5 C 0.055 3.945 6 H 0.093 0.907 7 N -0.366 5.366 8 C -0.371 4.371 9 H 0.103 0.897 10 C -0.266 4.266 11 N -0.620 5.620 12 Si 0.799 3.201 13 H -0.217 1.217 14 H -0.229 1.229 15 H -0.189 1.189 16 C -0.041 4.041 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.447 6.447 20 C -0.137 4.137 21 C -0.101 4.101 22 C -0.094 4.094 23 C -0.123 4.123 24 C -0.102 4.102 25 C -0.117 4.117 26 Cl -0.033 7.033 27 C 0.071 3.929 28 F -0.124 7.124 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.206 0.794 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.157 0.843 40 H 0.184 0.816 41 H 0.197 0.803 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.802 11.961 -20.476 24.964 hybrid contribution 0.213 -1.543 0.931 1.815 sum -7.589 10.418 -19.545 23.412 Atomic orbital electron populations 1.22058 0.94224 1.01490 1.03418 1.21987 0.94824 0.95807 0.83875 0.89112 1.23096 0.95844 1.00160 0.97419 1.21379 0.94544 0.89324 0.89221 0.90710 1.42559 1.05040 1.25166 1.63812 1.19663 0.85173 1.04691 1.27585 0.89713 1.25551 1.01498 0.98182 1.01332 1.69817 1.34372 1.15786 1.42047 0.85193 0.80452 0.76296 0.78131 1.21670 1.22875 1.18877 1.23010 0.86030 0.95798 0.99245 1.48652 1.28395 1.48224 1.09063 1.20408 0.83708 0.81520 0.82572 1.90621 1.26170 1.45511 1.82415 1.20633 1.01287 1.02010 0.89785 1.19526 0.94470 0.98604 0.97483 1.21451 1.00943 0.94895 0.92066 1.21604 0.93338 0.99195 0.98133 1.21373 0.97298 0.93344 0.98177 1.21202 0.91996 1.01683 0.96849 1.98373 1.34925 1.73339 1.96623 1.17639 0.95549 0.93003 0.86681 1.91481 1.89940 1.67439 1.63536 0.94598 0.90124 0.91247 0.91993 0.88510 0.79377 0.94134 0.92789 0.90185 0.88169 0.84266 0.81623 0.80313 0.81485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 8.71 71.98 0.63 -3.70 16 2 C 0.14 3.81 3.77 45.54 0.17 3.98 16 3 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.13 -3.78 6.12 32.06 0.20 -3.59 16 5 C 0.17 5.73 3.59 46.18 0.17 5.90 16 6 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 7 N -0.73 -33.52 5.18 -317.32 -1.64 -35.16 16 8 C -0.24 -12.18 9.98 84.03 0.84 -11.34 16 9 H 0.09 4.03 7.83 -2.91 -0.02 4.00 16 10 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 11 N -0.97 -57.31 13.06 21.65 0.28 -57.02 16 12 Si 0.97 43.78 29.55 68.60 2.03 45.80 16 13 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 16 C 0.08 2.63 6.24 86.73 0.54 3.18 16 17 N -0.61 -17.92 3.24 -787.73 -2.55 -20.47 16 18 C 0.53 15.74 7.62 87.66 0.67 16.41 16 19 O -0.57 -19.76 13.61 -3.02 -0.04 -19.80 16 20 C -0.10 -2.31 4.75 29.10 0.14 -2.17 16 21 C -0.10 -2.28 4.43 -19.82 -0.09 -2.37 16 22 C -0.08 -1.18 9.67 22.26 0.22 -0.97 16 23 C -0.10 -1.27 10.04 22.27 0.22 -1.04 16 24 C -0.08 -1.28 9.83 22.29 0.22 -1.06 16 25 C -0.09 -2.04 6.33 22.36 0.14 -1.90 16 26 Cl -0.06 -1.40 28.62 -2.72 -0.08 -1.48 16 27 C 0.09 2.47 7.11 22.39 0.16 2.63 16 28 F -0.15 -4.72 16.23 44.97 0.73 -3.99 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.18 5.89 -2.39 -0.01 2.17 16 32 H 0.06 2.06 7.93 -2.38 -0.02 2.04 16 33 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.37 19.09 7.71 -92.71 -0.72 18.37 16 35 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.05 1.92 8.03 -2.39 -0.02 1.90 16 37 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.10 2.53 7.94 -2.39 -0.02 2.51 16 39 H 0.14 2.36 8.00 -2.39 -0.02 2.34 16 40 H 0.17 1.61 8.04 -2.91 -0.02 1.58 16 41 H 0.18 0.74 8.06 -2.91 -0.02 0.71 16 42 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -68.12 369.10 3.74 -64.38 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.34 Total: 27.30 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 4.68 Total: 0.44 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -3.91 Total: -112.65 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.04 Total: -19.80 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.73 Total: -3.99 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -68.12 3.74 -64.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989485646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.947 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds