Wall clock time and date at job start Sat Apr 11 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.87418 * 2 1 4 4 C 1.54321 * 109.87938 * 121.17107 * 2 1 3 5 5 C 1.55158 * 102.93990 * 141.60872 * 4 2 1 6 6 H 1.09004 * 111.00365 * 82.57842 * 5 4 2 7 7 N 1.46507 * 111.00573 * 206.38185 * 5 4 2 8 8 C 1.36933 * 120.00345 * 204.99731 * 7 5 4 9 9 H 1.08008 * 119.99825 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99997 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00373 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99876 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47186 * 60.00242 * 12 10 8 14 14 H 1.48501 * 109.46992 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46876 * 300.00231 * 12 10 8 16 16 C 1.55119 * 101.48804 * 324.33209 * 5 4 2 17 17 N 1.47018 * 109.88110 * 238.97905 * 2 1 3 18 18 C 1.34782 * 125.65051 * 61.60860 * 17 2 1 19 19 O 1.21282 * 119.99484 * 359.97438 * 18 17 2 20 20 C 1.50692 * 120.00003 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.47116 * 180.02562 * 20 18 17 22 22 C 1.38261 * 119.97608 * 89.99533 * 21 20 18 23 23 C 1.38216 * 120.05976 * 179.70257 * 22 21 20 24 24 C 1.38324 * 120.01479 * 0.30654 * 23 22 21 25 25 Cl 1.73601 * 120.02134 * 179.97438 * 24 23 22 26 26 C 1.38542 * 119.95138 * 359.96973 * 24 23 22 27 27 F 1.35096 * 120.03236 * 180.02562 * 26 24 23 28 28 C 1.38202 * 119.97703 * 270.25755 * 21 20 18 29 29 H 1.09006 * 109.47313 * 179.56518 * 1 2 3 30 30 H 1.09000 * 109.47349 * 299.56652 * 1 2 3 31 31 H 1.09000 * 109.47432 * 59.56432 * 1 2 3 32 32 H 1.08996 * 110.72483 * 259.97006 * 4 2 1 33 33 H 1.09008 * 110.72425 * 23.07469 * 4 2 1 34 34 H 0.97006 * 119.99352 * 25.00708 * 7 5 4 35 35 H 0.97000 * 120.00168 * 179.97438 * 11 10 8 36 36 H 1.09005 * 110.50239 * 278.45306 * 16 5 4 37 37 H 1.09000 * 110.34687 * 156.05798 * 16 5 4 38 38 H 1.08996 * 109.47403 * 60.00188 * 20 18 17 39 39 H 1.08999 * 109.47577 * 300.00155 * 20 18 17 40 40 H 1.08002 * 119.97135 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.99371 * 180.27800 * 23 22 21 42 42 H 1.08002 * 120.00505 * 0.04030 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 1.2417 5 6 3.2875 -1.5152 0.6904 6 1 4.1654 -0.8698 0.6593 7 7 3.5537 -2.7211 1.4786 8 6 4.8170 -3.2478 1.5189 9 1 5.6174 -2.7740 0.9699 10 6 5.0689 -4.3907 2.2654 11 7 4.0935 -4.9684 2.9340 12 14 6.7926 -5.1088 2.3209 13 1 7.7306 -4.1019 2.8789 14 1 6.7968 -6.3198 3.1804 15 1 7.2203 -5.4760 0.9470 16 6 2.8099 -1.8816 -0.7392 17 7 2.0300 -0.7125 -1.1848 18 6 1.8074 -0.3588 -2.4662 19 8 1.1429 0.6242 -2.7172 20 6 2.3842 -1.1847 -3.5869 21 6 1.9921 -0.5795 -4.9102 22 6 2.8030 0.3707 -5.5026 23 6 2.4481 0.9224 -6.7192 24 6 1.2776 0.5288 -7.3424 25 17 0.8314 1.2221 -8.8701 26 6 0.4617 -0.4192 -6.7465 27 9 -0.6816 -0.8051 -7.3539 28 6 0.8194 -0.9708 -5.5280 29 1 -0.3634 -1.0277 -0.0078 30 1 -0.3634 0.5071 0.8938 31 1 -0.3634 0.5206 -0.8860 32 1 2.3529 -0.0487 2.0200 33 1 1.3039 -1.4459 1.6182 34 1 2.8348 -3.1465 1.9719 35 1 4.2695 -5.7673 3.4553 36 1 2.1800 -2.7709 -0.7152 37 1 3.6655 -2.0394 -1.3959 38 1 1.9987 -2.2023 -3.5239 39 1 3.4708 -1.2021 -3.5035 40 1 3.7168 0.6790 -5.0165 41 1 3.0847 1.6613 -7.1832 42 1 0.1840 -1.7096 -5.0623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989485751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:56 Heat of formation + Delta-G solvation = -51.500883 kcal Electronic energy + Delta-G solvation = -26518.283568 eV Core-core repulsion = 22438.670734 eV Total energy + Delta-G solvation = -4079.612834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.18180 -40.34782 -39.27080 -37.46303 -36.79506 -34.27703 -33.10362 -31.62835 -31.39263 -30.96158 -28.53318 -27.70123 -25.49828 -23.98460 -23.33903 -22.73389 -21.30650 -20.36090 -18.80580 -17.70548 -17.46387 -17.03672 -16.93501 -16.66142 -16.05612 -15.90907 -15.22230 -14.79548 -14.37548 -14.20675 -14.00078 -13.72477 -13.58437 -13.39738 -13.26232 -12.99235 -12.71249 -12.67019 -12.40578 -12.22386 -11.92323 -11.79797 -11.66985 -11.62599 -11.22806 -11.20077 -11.07360 -10.83057 -10.70730 -10.38469 -10.12264 -9.85917 -9.76312 -9.25644 -9.09967 -8.86183 -8.44018 -7.17930 -5.92749 -3.24247 0.63798 0.81387 1.71144 2.70441 2.93801 3.31587 3.34416 3.39900 3.40588 3.77525 4.24568 4.36575 4.43411 4.63394 4.74161 4.86060 5.01146 5.08071 5.09085 5.19425 5.21553 5.39734 5.43246 5.50955 5.52887 5.62391 5.64830 5.71837 5.72939 5.75985 6.01751 6.05318 6.09406 6.11888 6.27925 6.38378 6.39321 6.40507 6.58107 6.75128 7.54679 7.71262 8.23595 8.27028 9.36503 9.89596 10.24273 11.28931 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.002286 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.273518 B =12245.117819 C =13133.295485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.069 0.931 7 N -0.711 5.711 8 C -0.252 4.252 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.909 3.091 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.070 3.930 17 N -0.608 5.608 18 C 0.529 3.471 19 O -0.544 6.544 20 C -0.104 4.104 21 C -0.024 4.024 22 C -0.102 4.102 23 C -0.081 4.081 24 C -0.077 4.077 25 Cl -0.056 7.056 26 C 0.111 3.889 27 F -0.128 7.128 28 C -0.128 4.128 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.258 0.742 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 10.391 -16.952 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.087 0.913 7 N -0.351 5.351 8 C -0.383 4.383 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.056 4.056 17 N -0.342 5.342 18 C 0.317 3.683 19 O -0.422 6.422 20 C -0.144 4.144 21 C -0.025 4.025 22 C -0.121 4.121 23 C -0.099 4.099 24 C -0.105 4.105 25 Cl -0.027 7.027 26 C 0.090 3.910 27 F -0.107 7.107 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.222 0.778 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.379 10.895 -17.285 21.128 hybrid contribution 0.425 -0.751 -0.019 0.863 sum -4.955 10.144 -17.304 20.661 Atomic orbital electron populations 1.22132 0.95188 1.02159 1.02421 1.21509 0.94209 0.96073 0.84631 0.91029 1.23056 0.99213 0.99692 0.95771 1.21322 0.94672 0.89469 0.88491 0.91341 1.42323 1.09636 1.27685 1.55432 1.19196 0.86815 1.06933 1.25326 0.90978 1.24778 0.97668 0.98266 0.99671 1.69644 1.30940 1.22193 1.34787 0.86259 0.83880 0.78460 0.77490 1.21114 1.21622 1.21104 1.23598 0.94525 0.87447 1.00038 1.48644 1.52193 1.28905 1.04481 1.19951 0.80725 0.85244 0.82380 1.90698 1.40290 1.27788 1.83438 1.20724 1.03625 1.00415 0.89631 1.19279 0.93323 0.95275 0.94592 1.21057 1.00544 0.95894 0.94580 1.20918 0.94378 0.99622 0.95031 1.20972 0.98066 1.00274 0.91157 1.98380 1.92605 1.83362 1.28374 1.17306 0.83968 0.96859 0.92818 1.91536 1.46891 1.89703 1.82539 1.20974 0.97899 1.02158 0.93628 0.92574 0.91918 0.91635 0.90338 0.90390 0.77823 0.93206 0.91154 0.91150 0.87333 0.87117 0.84313 0.83904 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.10 37.16 0.34 -1.75 16 2 C 0.14 1.91 3.46 -66.96 -0.23 1.68 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -2.01 6.12 -24.90 -0.15 -2.17 16 5 C 0.17 2.97 3.73 -65.66 -0.24 2.73 16 6 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 7 N -0.71 -15.83 5.24 -51.24 -0.27 -16.10 16 8 C -0.25 -6.33 9.96 -15.06 -0.15 -6.48 16 9 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 10 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 11 N -0.93 -26.21 13.06 55.49 0.72 -25.48 16 12 Si 0.91 20.90 29.55 -169.99 -5.02 15.87 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.07 1.04 6.40 -2.41 -0.02 1.02 16 17 N -0.61 -8.46 3.06 -162.88 -0.50 -8.96 16 18 C 0.53 7.24 7.64 -10.99 -0.08 7.16 16 19 O -0.54 -9.01 15.07 5.56 0.08 -8.92 16 20 C -0.10 -1.07 4.83 -29.04 -0.14 -1.21 16 21 C -0.02 -0.25 4.37 -104.63 -0.46 -0.71 16 22 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16 23 C -0.08 -0.75 9.83 -39.56 -0.39 -1.13 16 24 C -0.08 -0.83 6.33 -39.44 -0.25 -1.08 16 25 Cl -0.06 -0.57 28.62 -51.86 -1.48 -2.05 16 26 C 0.11 1.28 7.28 -39.39 -0.29 0.99 16 27 F -0.13 -1.56 16.84 2.25 0.04 -1.53 16 28 C -0.13 -1.39 9.68 -39.52 -0.38 -1.78 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.94 6.88 -51.93 -0.36 0.58 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.17 7.72 -51.92 -0.40 0.77 16 34 H 0.39 9.27 7.77 -40.82 -0.32 8.96 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.98 7.48 -51.93 -0.39 0.59 16 38 H 0.11 0.98 8.09 -51.93 -0.42 0.56 16 39 H 0.11 0.95 7.80 -51.93 -0.40 0.54 16 40 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -29.49 371.51 -9.39 -38.88 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.64 Total: 7.05 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.92 Total: -4.36 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.04 Total: -50.54 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.49 -9.39 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989485751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.616 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds