Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87481 * 2 1 4 4 C 1.54323 * 109.88079 * 121.17095 * 2 1 3 5 5 C 1.55158 * 102.94128 * 141.61300 * 4 2 1 6 6 H 1.09003 * 111.00475 * 206.38768 * 5 4 2 7 7 N 1.46501 * 111.00757 * 82.57018 * 5 4 2 8 8 C 1.36935 * 119.99951 * 154.99615 * 7 5 4 9 9 H 1.07996 * 120.00219 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99513 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99659 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00364 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47241 * 89.99656 * 12 10 8 14 14 H 1.48500 * 109.47044 * 210.00093 * 12 10 8 15 15 H 1.48498 * 109.46916 * 329.99679 * 12 10 8 16 16 C 1.55134 * 101.48605 * 324.32956 * 5 4 2 17 17 N 1.47022 * 109.88579 * 238.98057 * 2 1 3 18 18 C 1.34779 * 125.64530 * 61.60307 * 17 2 1 19 19 O 1.21282 * 120.00135 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99623 * 180.02562 * 18 17 2 21 21 C 1.50700 * 109.46914 * 180.02562 * 20 18 17 22 22 C 1.38266 * 119.97378 * 89.99940 * 21 20 18 23 23 C 1.38217 * 120.06045 * 179.97438 * 22 21 20 24 24 C 1.38327 * 120.01281 * 359.97438 * 23 22 21 25 25 Cl 1.73601 * 120.02555 * 179.97438 * 24 23 22 26 26 C 1.38544 * 119.94965 * 359.97438 * 24 23 22 27 27 F 1.35104 * 120.03079 * 179.97438 * 26 24 23 28 28 C 1.38196 * 119.97738 * 270.20967 * 21 20 18 29 29 H 1.09004 * 109.46956 * 179.56293 * 1 2 3 30 30 H 1.08994 * 109.47262 * 299.56470 * 1 2 3 31 31 H 1.09000 * 109.46722 * 59.56775 * 1 2 3 32 32 H 1.09001 * 110.71955 * 259.97154 * 4 2 1 33 33 H 1.08997 * 110.72158 * 23.07170 * 4 2 1 34 34 H 0.97001 * 119.99546 * 335.00533 * 7 5 4 35 35 H 0.96999 * 120.00229 * 180.02562 * 11 10 8 36 36 H 1.08990 * 110.49856 * 278.45761 * 16 5 4 37 37 H 1.08998 * 110.34388 * 156.05529 * 16 5 4 38 38 H 1.08996 * 109.47249 * 60.00305 * 20 18 17 39 39 H 1.08997 * 109.47539 * 300.00200 * 20 18 17 40 40 H 1.07992 * 119.97251 * 359.97438 * 22 21 20 41 41 H 1.07993 * 119.99553 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.00578 * 0.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 1.2417 5 6 3.2876 -1.5151 0.6904 6 1 3.4856 -2.4124 1.2768 7 7 4.4675 -0.6476 0.6485 8 6 5.7218 -1.1949 0.6972 9 1 5.8413 -2.2660 0.7661 10 6 6.8396 -0.3728 0.6580 11 7 8.0453 -0.8989 0.7043 12 14 6.6329 1.4799 0.5397 13 1 6.5626 2.0584 1.9055 14 1 7.7908 2.0618 -0.1855 15 1 5.3809 1.7923 -0.1953 16 6 2.8100 -1.8816 -0.7393 17 7 2.0301 -0.7125 -1.1848 18 6 1.8075 -0.3587 -2.4662 19 8 1.1436 0.6248 -2.7172 20 6 2.3834 -1.1853 -3.5870 21 6 1.9914 -0.5799 -4.9102 22 6 2.8030 0.3697 -5.5030 23 6 2.4455 0.9256 -6.7168 24 6 1.2751 0.5320 -7.3402 25 17 0.8254 1.2305 -8.8645 26 6 0.4620 -0.4203 -6.7472 27 9 -0.6817 -0.8056 -7.3544 28 6 0.8189 -0.9711 -5.5282 29 1 -0.3633 -1.0277 -0.0078 30 1 -0.3633 0.5070 0.8938 31 1 -0.3633 0.5205 -0.8861 32 1 2.3529 -0.0486 2.0200 33 1 1.3040 -1.4458 1.6182 34 1 4.3601 0.3144 0.5864 35 1 8.8264 -0.3245 0.6773 36 1 2.1802 -2.7708 -0.7151 37 1 3.6656 -2.0393 -1.3959 38 1 1.9972 -2.2025 -3.5238 39 1 3.4701 -1.2034 -3.5038 40 1 3.7171 0.6772 -5.0171 41 1 3.0800 1.6675 -7.1786 42 1 0.1835 -1.7101 -5.0627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989485752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -47.274712 kcal Electronic energy + Delta-G solvation = -27077.880440 eV Core-core repulsion = 22998.450866 eV Total energy + Delta-G solvation = -4079.429573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.14239 -40.32416 -39.26096 -37.51632 -36.74798 -34.19359 -33.04694 -31.66618 -31.46249 -30.89662 -29.06982 -27.68866 -25.63884 -23.63943 -23.27897 -22.80519 -21.49590 -20.16508 -18.79698 -17.81666 -17.63329 -17.02084 -16.91742 -16.60320 -16.12549 -15.90094 -15.15044 -14.67290 -14.35134 -14.13466 -14.09492 -13.98165 -13.50119 -13.47040 -13.20139 -12.93641 -12.81595 -12.49642 -12.40283 -12.18651 -12.03182 -11.77857 -11.70465 -11.58438 -11.45007 -11.17671 -11.14902 -10.92559 -10.73908 -10.43996 -10.16536 -9.73334 -9.72039 -9.19918 -9.15234 -8.79880 -8.42436 -7.43709 -5.91522 -3.28949 0.70327 0.87794 1.76690 2.77405 2.99941 3.28402 3.32514 3.37589 3.38045 3.82655 4.30132 4.45319 4.46622 4.60921 4.82009 4.92288 4.93458 5.01268 5.09553 5.16218 5.22018 5.27654 5.43110 5.48252 5.51997 5.58260 5.62206 5.70920 5.71770 5.80616 5.85412 5.94631 6.02682 6.18228 6.22359 6.24502 6.39281 6.45186 6.47867 6.62171 7.74556 7.82721 8.27180 8.32457 9.04284 9.77043 9.95462 11.25960 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.002999 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.279724 B = 9335.430583 C =10557.851336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.070 0.930 4 C -0.142 4.142 5 C 0.175 3.825 6 H 0.084 0.916 7 N -0.736 5.736 8 C -0.253 4.253 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.880 3.120 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.066 3.934 17 N -0.602 5.602 18 C 0.532 3.468 19 O -0.544 6.544 20 C -0.104 4.104 21 C -0.024 4.024 22 C -0.101 4.101 23 C -0.080 4.080 24 C -0.077 4.077 25 Cl -0.057 7.057 26 C 0.109 3.891 27 F -0.129 7.129 28 C -0.128 4.128 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.062 -1.123 -11.104 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.088 0.912 4 C -0.181 4.181 5 C 0.063 3.937 6 H 0.102 0.898 7 N -0.377 5.377 8 C -0.382 4.382 9 H 0.111 0.889 10 C -0.185 4.185 11 N -0.575 5.575 12 Si 0.710 3.290 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.060 4.060 17 N -0.335 5.335 18 C 0.320 3.680 19 O -0.422 6.422 20 C -0.144 4.144 21 C -0.024 4.024 22 C -0.119 4.119 23 C -0.099 4.099 24 C -0.104 4.104 25 Cl -0.028 7.028 26 C 0.089 3.911 27 F -0.108 7.108 28 C -0.147 4.147 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.196 0.804 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.273 -0.683 -11.445 19.097 hybrid contribution -0.185 1.343 -0.369 1.405 sum -15.457 0.659 -11.814 19.466 Atomic orbital electron populations 1.22128 0.95219 1.01878 1.02523 1.21496 0.93843 0.96489 0.84845 0.91177 1.23126 0.98474 1.00197 0.96335 1.21314 0.86089 0.94435 0.91870 0.89849 1.42700 1.01832 1.04286 1.88872 1.19055 0.81201 0.94121 1.43854 0.88897 1.24661 0.95096 0.97295 1.01480 1.69691 0.96952 1.34295 1.56544 0.86628 0.77083 0.87275 0.77996 1.20921 1.21611 1.20325 1.23465 0.94671 0.86919 1.00918 1.48476 1.51927 1.28637 1.04445 1.19914 0.80528 0.85252 0.82330 1.90695 1.40470 1.27656 1.83410 1.20725 1.04026 1.00040 0.89589 1.19279 0.93258 0.95307 0.94592 1.21126 1.00600 0.95665 0.94512 1.20938 0.94337 0.99576 0.95026 1.20964 0.98099 1.00136 0.91212 1.98377 1.92503 1.83172 1.28741 1.17290 0.84001 0.96977 0.92873 1.91530 1.46884 1.89772 1.82592 1.20930 0.97896 1.02286 0.93612 0.92722 0.92011 0.91567 0.89870 0.90279 0.80400 0.92871 0.92054 0.89800 0.87552 0.86758 0.84157 0.83870 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.10 37.16 0.34 -1.63 16 2 C 0.14 1.93 3.45 -66.95 -0.23 1.70 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.14 -1.87 6.07 -24.90 -0.15 -2.02 16 5 C 0.17 2.78 3.72 -65.66 -0.24 2.54 16 6 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 7 N -0.74 -15.40 5.05 -51.23 -0.26 -15.66 16 8 C -0.25 -6.43 10.44 -15.06 -0.16 -6.59 16 9 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 10 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 11 N -0.93 -27.49 13.97 55.49 0.78 -26.72 16 12 Si 0.88 21.08 27.74 -169.99 -4.71 16.37 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 15 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 16 C 0.07 0.91 6.41 -2.41 -0.02 0.90 16 17 N -0.60 -8.74 3.06 -162.88 -0.50 -9.24 16 18 C 0.53 7.92 7.64 -10.98 -0.08 7.83 16 19 O -0.54 -9.73 15.07 5.56 0.08 -9.64 16 20 C -0.10 -1.19 4.83 -29.03 -0.14 -1.33 16 21 C -0.02 -0.28 4.37 -104.63 -0.46 -0.73 16 22 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 23 C -0.08 -0.86 9.83 -39.56 -0.39 -1.25 16 24 C -0.08 -0.89 6.33 -39.44 -0.25 -1.14 16 25 Cl -0.06 -0.62 28.62 -51.86 -1.48 -2.10 16 26 C 0.11 1.32 7.28 -39.39 -0.29 1.04 16 27 F -0.13 -1.62 16.84 2.25 0.04 -1.58 16 28 C -0.13 -1.47 9.68 -39.52 -0.38 -1.85 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.95 6.88 -51.93 -0.36 0.59 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.85 7.85 -51.93 -0.41 0.45 16 34 H 0.36 7.82 5.73 -40.82 -0.23 7.59 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.25 7.48 -51.93 -0.39 0.86 16 38 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.11 1.26 7.79 -51.93 -0.40 0.85 16 40 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -31.09 368.58 -9.04 -40.13 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.61 Total: 6.76 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.93 Total: -3.86 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.02 Total: -51.61 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.37 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.09 -9.04 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989485752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.148 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds