Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99832 * 2 1 4 4 O 1.21278 * 119.99854 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00161 * 359.97438 * 3 2 1 6 6 C 1.50701 * 109.47064 * 180.02562 * 5 3 2 7 7 C 1.38462 * 120.01493 * 89.99953 * 6 5 3 8 8 F 1.35091 * 120.02299 * 0.02562 * 7 6 5 9 9 C 1.38446 * 119.95590 * 179.97438 * 7 6 5 10 10 C 1.38222 * 120.00536 * 0.02562 * 9 7 6 11 11 C 1.38204 * 120.03837 * 0.02562 * 10 9 7 12 12 C 1.38287 * 120.02068 * 269.72499 * 6 5 3 13 13 Cl 1.73599 * 119.99819 * 0.02562 * 12 6 5 14 14 C 1.46496 * 119.99896 * 179.97438 * 2 1 3 15 15 C 1.53782 * 113.61334 * 37.49936 * 14 2 1 16 16 C 1.53781 * 87.07899 * 220.01519 * 15 14 2 17 17 N 1.46501 * 113.68890 * 139.99312 * 16 15 14 18 18 C 1.36940 * 120.00509 * 107.46363 * 17 16 15 19 19 H 1.08004 * 119.99515 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00337 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00397 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00045 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46763 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47265 * 119.99676 * 22 20 18 25 25 H 1.48500 * 109.46808 * 239.99740 * 22 20 18 26 26 C 1.53774 * 87.08150 * 25.43503 * 16 15 14 27 27 H 1.08999 * 109.47333 * 89.99805 * 1 2 3 28 28 H 1.08997 * 109.47024 * 210.00620 * 1 2 3 29 29 H 1.09000 * 109.46875 * 330.00379 * 1 2 3 30 30 H 1.09002 * 109.47152 * 60.00245 * 5 3 2 31 31 H 1.09001 * 109.46980 * 300.00345 * 5 3 2 32 32 H 1.08006 * 119.99881 * 179.97438 * 9 7 6 33 33 H 1.08005 * 119.98157 * 180.02562 * 10 9 7 34 34 H 1.07999 * 119.98163 * 179.97438 * 11 10 9 35 35 H 1.08996 * 112.84980 * 168.80420 * 14 2 1 36 36 H 1.09003 * 113.61518 * 334.56567 * 15 14 2 37 37 H 1.09006 * 113.61394 * 105.47246 * 15 14 2 38 38 H 1.08997 * 113.62067 * 270.88092 * 16 15 14 39 39 H 0.97009 * 120.00164 * 287.46628 * 17 16 15 40 40 H 0.96997 * 120.00704 * 180.02562 * 21 20 18 41 41 H 1.08999 * 113.61283 * 220.01795 * 26 16 15 42 42 H 1.09002 * 113.61921 * 89.11595 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3647 3.6178 -0.0011 7 6 2.8148 4.1437 -1.2003 8 9 2.3760 3.6307 -2.3704 9 6 3.7141 5.1963 -1.1993 10 6 4.1624 5.7213 -0.0019 11 6 3.7140 5.1957 1.1951 12 6 2.8099 4.1479 1.1960 13 17 2.2412 3.4935 2.7000 14 6 2.1975 -1.2687 0.0006 15 6 1.5374 -2.3615 -0.8567 16 6 1.9130 -3.3524 0.2577 17 7 0.8729 -4.3455 0.5374 18 6 1.0474 -5.6474 0.1504 19 1 1.9517 -5.9420 -0.3615 20 6 0.0618 -6.5882 0.4149 21 7 -1.0404 -6.2292 1.0383 22 14 0.3002 -8.3644 -0.1124 23 1 1.6143 -8.5076 -0.7890 24 1 0.2595 -9.2452 1.0823 25 1 -0.7839 -8.7520 -1.0504 26 6 1.8954 -2.1540 1.2211 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 0.7584 2.5303 0.8892 31 1 0.7590 2.5298 -0.8908 32 1 4.0659 5.6068 -2.1343 33 1 4.8636 6.5428 -0.0016 34 1 4.0652 5.6063 2.1302 35 1 3.2624 -1.1427 -0.1945 36 1 0.4623 -2.2299 -0.9800 37 1 2.0528 -2.5482 -1.7989 38 1 2.9001 -3.7972 0.1321 39 1 0.0605 -4.0809 0.9968 40 1 -1.7291 -6.8867 1.2235 41 1 2.6997 -2.1731 1.9565 42 1 0.9182 -1.9656 1.6660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999739574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = -23.713811 kcal Electronic energy + Delta-G solvation = -26736.748081 eV Core-core repulsion = 22658.340185 eV Total energy + Delta-G solvation = -4078.407896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.25142 -40.38933 -39.39268 -37.91976 -36.79089 -34.78329 -33.47255 -32.87465 -30.79784 -30.02873 -28.12271 -26.97748 -25.13069 -24.47613 -23.26340 -22.99820 -21.74034 -19.42316 -18.78645 -18.08202 -17.25056 -17.22661 -17.09714 -16.44012 -16.00912 -15.73003 -15.45101 -15.10154 -14.55952 -14.55558 -14.00982 -13.84819 -13.71623 -13.32844 -13.25725 -13.02005 -12.79199 -12.65660 -12.20907 -12.11286 -11.91560 -11.81941 -11.73696 -11.69238 -11.25016 -11.17881 -10.91773 -10.57918 -10.46580 -10.24659 -9.99731 -9.82531 -9.59606 -9.14788 -9.05645 -8.91222 -8.43061 -6.99931 -5.81517 -3.10300 0.60768 0.67152 1.70331 2.63720 2.90465 3.21400 3.41241 3.47550 3.49401 3.86673 4.09877 4.33570 4.44331 4.54391 4.57238 4.78956 4.95818 5.00886 5.09351 5.14691 5.20503 5.25588 5.39077 5.44336 5.48881 5.54986 5.62278 5.69705 5.75486 5.79305 5.85789 5.96259 6.15642 6.28836 6.31398 6.34303 6.44851 6.56639 6.80207 7.03185 7.51088 7.68294 8.20758 8.36975 9.48464 10.05042 10.39772 11.40935 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024483 B = 0.002281 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.362432 B =12274.835372 C =12771.424363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.519 3.481 4 O -0.537 6.537 5 C -0.110 4.110 6 C -0.089 4.089 7 C 0.125 3.875 8 F -0.129 7.129 9 C -0.149 4.149 10 C -0.080 4.080 11 C -0.120 4.120 12 C 0.003 3.997 13 Cl -0.051 7.051 14 C 0.117 3.883 15 C -0.174 4.174 16 C 0.170 3.830 17 N -0.710 5.710 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.162 4.162 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.063 0.937 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.830 28.003 -1.147 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.328 5.328 3 C 0.306 3.694 4 O -0.414 6.414 5 C -0.149 4.149 6 C -0.091 4.091 7 C 0.105 3.895 8 F -0.108 7.108 9 C -0.168 4.168 10 C -0.099 4.099 11 C -0.139 4.139 12 C -0.024 4.024 13 Cl -0.022 7.022 14 C 0.014 3.986 15 C -0.216 4.216 16 C 0.057 3.943 17 N -0.348 5.348 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.202 4.202 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.437 27.691 -1.110 28.451 hybrid contribution -0.538 -1.061 -0.235 1.212 sum 5.899 26.630 -1.345 27.309 Atomic orbital electron populations 1.21840 0.79546 1.03548 1.02179 1.47825 1.06948 1.05767 1.72305 1.20189 0.87952 0.84793 0.76445 1.90692 1.13675 1.87243 1.49802 1.20730 0.97565 0.90456 1.06188 1.19146 1.00719 0.98217 0.91038 1.17270 0.96814 0.94820 0.80567 1.91524 1.87872 1.86094 1.45279 1.21222 0.98376 0.96871 1.00331 1.20948 0.98783 0.99402 0.90726 1.21091 0.97099 0.96014 0.99697 1.20525 0.98509 0.96644 0.86752 1.98395 1.87783 1.85511 1.30524 1.22607 0.97216 0.80181 0.98592 1.24321 1.01054 0.96600 0.99631 1.21338 0.93737 0.87286 0.91962 1.42362 1.18569 1.05206 1.68620 1.19357 1.02086 0.85188 1.30724 0.90955 1.24762 0.96671 0.98297 1.01188 1.69661 1.08317 1.33560 1.46554 0.86111 0.77292 0.85034 0.77728 1.20490 1.21839 1.21852 1.23921 1.01817 0.97260 0.97248 0.92259 0.89800 0.91385 0.86970 0.87310 0.84015 0.83972 0.84153 0.86904 0.89840 0.92160 0.90288 0.78126 0.93507 0.91782 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 8.84 59.85 0.53 1.33 16 2 N -0.60 -8.33 3.08 -173.00 -0.53 -8.86 16 3 C 0.52 7.47 7.67 -10.98 -0.08 7.39 16 4 O -0.54 -9.56 15.52 5.56 0.09 -9.47 16 5 C -0.11 -1.19 3.82 -29.03 -0.11 -1.30 16 6 C -0.09 -1.00 4.38 -104.52 -0.46 -1.45 16 7 C 0.12 1.35 7.24 -39.42 -0.29 1.06 16 8 F -0.13 -1.52 16.48 2.25 0.04 -1.48 16 9 C -0.15 -1.22 10.03 -39.51 -0.40 -1.62 16 10 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 11 C -0.12 -0.96 9.83 -39.54 -0.39 -1.35 16 12 C 0.00 0.03 6.31 -39.51 -0.25 -0.22 16 13 Cl -0.05 -0.53 27.29 -51.86 -1.42 -1.94 16 14 C 0.12 1.86 4.21 -67.12 -0.28 1.57 16 15 C -0.17 -2.99 7.31 -25.92 -0.19 -3.18 16 16 C 0.17 3.33 4.48 -67.12 -0.30 3.03 16 17 N -0.71 -17.43 5.40 -52.64 -0.28 -17.71 16 18 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C -0.16 -2.74 7.37 -25.92 -0.19 -2.93 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.02 6.34 -51.93 -0.33 0.69 16 29 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 30 H 0.11 1.04 6.15 -51.93 -0.32 0.72 16 31 H 0.11 1.01 7.60 -51.93 -0.39 0.62 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.14 0.52 8.06 -52.48 -0.42 0.09 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.11 1.90 7.23 -51.93 -0.38 1.52 16 36 H 0.08 1.46 6.72 -51.93 -0.35 1.11 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 39 H 0.38 9.94 7.92 -40.82 -0.32 9.62 16 40 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 1.37 6.90 -51.93 -0.36 1.01 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -32.71 366.84 -9.22 -41.93 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.29 Total: 7.72 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.05 Total: -5.89 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.09 Total: -53.58 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.42 Total: -1.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.71 -9.22 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999739574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.218 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds