Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99756 * 2 1 4 4 O 1.21285 * 119.99951 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99931 * 359.97438 * 3 2 1 6 6 C 1.50707 * 109.46743 * 180.02562 * 5 3 2 7 7 C 1.38247 * 119.98043 * 264.72776 * 6 5 3 8 8 C 1.38188 * 120.03840 * 179.72828 * 7 6 5 9 9 C 1.38492 * 119.99681 * 0.54840 * 8 7 6 10 10 F 1.35098 * 120.01915 * 179.74904 * 9 8 7 11 11 C 1.38418 * 119.96502 * 359.72574 * 9 8 7 12 12 C 1.38336 * 119.98143 * 85.00578 * 6 5 3 13 13 Cl 1.73602 * 120.00121 * 359.97378 * 12 6 5 14 14 C 1.46498 * 120.00166 * 180.02562 * 2 1 3 15 15 H 1.08997 * 110.77980 * 178.21516 * 14 2 1 16 16 C 1.55158 * 110.72069 * 54.97259 * 14 2 1 17 17 C 1.55122 * 101.48762 * 205.96821 * 16 14 2 18 18 N 1.47431 * 104.72104 * 37.29897 * 17 16 14 19 19 C 1.36933 * 125.64811 * 155.81923 * 18 17 16 20 20 H 1.08005 * 119.99933 * 199.28695 * 19 18 17 21 21 C 1.38808 * 120.00365 * 19.28278 * 19 18 17 22 22 N 1.31627 * 119.99820 * 28.57549 * 21 19 18 23 23 Si 1.86799 * 120.00377 * 208.29906 * 21 19 18 24 24 H 1.48497 * 109.47095 * 180.27771 * 23 21 19 25 25 H 1.48503 * 109.47115 * 300.27695 * 23 21 19 26 26 H 1.48496 * 109.47139 * 60.27388 * 23 21 19 27 27 C 1.47021 * 108.70053 * 335.54690 * 18 17 16 28 28 H 1.09001 * 109.46650 * 270.00243 * 1 2 3 29 29 H 1.08994 * 109.47382 * 29.99654 * 1 2 3 30 30 H 1.09000 * 109.47040 * 150.00094 * 1 2 3 31 31 H 1.08991 * 109.47579 * 299.99955 * 5 3 2 32 32 H 1.08994 * 109.46976 * 60.00899 * 5 3 2 33 33 H 1.08000 * 119.97966 * 0.02562 * 7 6 5 34 34 H 1.07993 * 119.99891 * 180.24822 * 8 7 6 35 35 H 1.07994 * 120.02433 * 180.02562 * 11 9 8 36 36 H 1.09003 * 111.00655 * 324.21350 * 16 14 2 37 37 H 1.09001 * 111.00076 * 88.02317 * 16 14 2 38 38 H 1.09002 * 110.50005 * 278.45688 * 17 16 14 39 39 H 1.08999 * 110.34198 * 156.05923 * 17 16 14 40 40 H 0.96997 * 119.99651 * 5.39997 * 22 21 19 41 41 H 1.09007 * 109.87700 * 120.70641 * 27 18 17 42 42 H 1.08996 * 109.88710 * 241.87086 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3646 3.6178 -0.0011 7 6 2.7299 4.2149 1.1911 8 6 3.6321 5.2616 1.1925 9 6 4.1622 5.7205 -0.0018 10 9 5.0404 6.7471 -0.0014 11 6 3.7922 5.1264 -1.1960 12 6 2.8932 4.0749 -1.1950 13 17 2.4288 3.3287 -2.6921 14 6 2.1975 -1.2687 -0.0006 15 1 3.2730 -1.0942 -0.0322 16 6 1.7507 -2.1601 -1.1893 17 6 2.0692 -3.5787 -0.6486 18 7 1.7324 -3.5173 0.7854 19 6 1.4005 -4.5866 1.5737 20 1 0.8770 -4.4290 2.5052 21 6 1.7367 -5.8732 1.1757 22 7 2.7933 -6.0722 0.4164 23 14 0.6943 -7.3231 1.7241 24 1 1.2647 -8.5790 1.1740 25 1 0.6838 -7.3922 3.2075 26 1 -0.6942 -7.1505 1.2268 27 6 1.8183 -2.1187 1.2304 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7590 2.5299 -0.8907 32 1 0.7584 2.5303 0.8892 33 1 2.3136 3.8599 2.1222 34 1 3.9201 5.7250 2.1245 35 1 4.2052 5.4831 -2.1279 36 1 0.6849 -2.0434 -1.3862 37 1 2.3368 -1.9429 -2.0823 38 1 3.1264 -3.8090 -0.7804 39 1 1.4522 -4.3232 -1.1516 40 1 3.3810 -5.3317 0.1995 41 1 0.8541 -1.7944 1.6220 42 1 2.5849 -2.0206 1.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033383417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -31.462392 kcal Electronic energy + Delta-G solvation = -26914.469143 eV Core-core repulsion = 22835.725243 eV Total energy + Delta-G solvation = -4078.743900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.27499 -40.42573 -39.24549 -37.48076 -36.77560 -34.96200 -33.12962 -32.15707 -31.33491 -29.26737 -28.31692 -27.33283 -26.34771 -24.25678 -23.54708 -22.49123 -20.58848 -20.32257 -18.85742 -18.17903 -17.54362 -17.33286 -17.15634 -16.32490 -15.97044 -15.69035 -15.39415 -14.98304 -14.42081 -14.25088 -14.10094 -13.97350 -13.77549 -13.36407 -13.30597 -13.07151 -12.92748 -12.55546 -12.37393 -12.21050 -12.08554 -11.67640 -11.63765 -11.58234 -11.22711 -11.06211 -10.76321 -10.71534 -10.56419 -10.11293 -10.03126 -9.80687 -9.55486 -9.34393 -8.91612 -8.49504 -8.39133 -6.95027 -6.12305 -3.18401 0.60026 0.70096 1.71553 2.64104 2.86887 3.21508 3.48709 3.52151 3.70522 3.84323 4.19108 4.29754 4.48621 4.54292 4.58813 4.70129 4.98115 5.03994 5.10200 5.19252 5.24008 5.25606 5.35472 5.46818 5.49349 5.51663 5.59288 5.61733 5.69541 5.79246 5.89609 5.97467 6.11218 6.32418 6.33605 6.43306 6.59585 6.83575 6.90533 7.00708 7.48145 7.78882 8.21164 8.47026 8.99828 9.79087 10.34734 11.20056 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024915 B = 0.002374 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.559490 B =11793.114355 C =12095.061495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.601 5.601 3 C 0.517 3.483 4 O -0.533 6.533 5 C -0.107 4.107 6 C -0.063 4.063 7 C -0.065 4.065 8 C -0.147 4.147 9 C 0.110 3.890 10 F -0.134 7.134 11 C -0.146 4.146 12 C 0.007 3.993 13 Cl -0.051 7.051 14 C 0.128 3.872 15 H 0.105 0.895 16 C -0.144 4.144 17 C 0.146 3.854 18 N -0.600 5.600 19 C -0.339 4.339 20 H 0.063 0.937 21 C -0.024 4.024 22 N -0.913 5.913 23 Si 1.066 2.934 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.129 3.871 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.053 0.947 40 H 0.269 0.731 41 H 0.029 0.971 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 24.792 -3.046 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.333 5.333 3 C 0.304 3.696 4 O -0.409 6.409 5 C -0.146 4.146 6 C -0.065 4.065 7 C -0.084 4.084 8 C -0.165 4.165 9 C 0.090 3.910 10 F -0.113 7.113 11 C -0.166 4.166 12 C -0.020 4.020 13 Cl -0.022 7.022 14 C 0.025 3.975 15 H 0.123 0.877 16 C -0.184 4.184 17 C 0.020 3.980 18 N -0.327 5.327 19 C -0.466 4.466 20 H 0.081 0.919 21 C -0.227 4.227 22 N -0.553 5.553 23 Si 0.895 3.105 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.002 3.998 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.219 23.025 -3.257 23.634 hybrid contribution 0.310 1.769 0.109 1.799 sum -3.909 24.794 -3.147 25.297 Atomic orbital electron populations 1.21835 0.79691 1.03315 1.02200 1.47805 1.06977 1.05779 1.72751 1.20257 0.88024 0.84746 0.76577 1.90724 1.13660 1.87119 1.49401 1.20777 0.97505 0.90416 1.05924 1.19252 0.98710 0.96781 0.91729 1.20850 0.95879 0.94182 0.97460 1.21206 0.98991 0.98910 0.97441 1.17438 0.91697 0.87842 0.94015 1.91525 1.66327 1.56097 1.97328 1.20911 0.99773 0.97389 0.98494 1.20434 0.98372 0.95544 0.87668 1.98393 1.90833 1.81457 1.31547 1.22197 0.97305 0.81423 0.96610 0.87744 1.23225 1.01040 0.97275 0.96821 1.21554 0.98291 0.92718 0.85471 1.44507 1.82025 1.01688 1.04506 1.19693 1.34986 0.85874 1.06092 0.91876 1.25802 0.98148 0.98522 1.00188 1.70785 1.10493 1.34520 1.39535 0.83517 0.75452 0.76070 0.75459 1.21063 1.21981 1.22084 1.21566 0.98035 0.86315 0.93849 0.92260 0.91333 0.90063 0.87336 0.87281 0.83930 0.83951 0.83634 0.91174 0.91609 0.95319 0.92902 0.91957 0.95286 0.95698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.13 59.85 0.55 1.32 16 2 N -0.60 -8.51 2.88 -171.84 -0.50 -9.01 16 3 C 0.52 7.22 7.67 -10.98 -0.08 7.13 16 4 O -0.53 -9.53 15.41 5.55 0.09 -9.44 16 5 C -0.11 -1.01 3.89 -29.03 -0.11 -1.13 16 6 C -0.06 -0.65 4.38 -104.58 -0.46 -1.11 16 7 C -0.07 -0.58 9.68 -39.60 -0.38 -0.96 16 8 C -0.15 -1.27 10.03 -39.51 -0.40 -1.66 16 9 C 0.11 1.08 7.30 -39.42 -0.29 0.79 16 10 F -0.13 -1.36 17.27 2.25 0.04 -1.32 16 11 C -0.15 -1.45 9.81 -39.48 -0.39 -1.84 16 12 C 0.01 0.07 6.31 -39.51 -0.25 -0.18 16 13 Cl -0.05 -0.55 27.40 -51.86 -1.42 -1.97 16 14 C 0.13 2.29 3.35 -66.10 -0.22 2.07 16 15 H 0.10 2.07 7.00 -51.93 -0.36 1.71 16 16 C -0.14 -2.58 6.62 -24.47 -0.16 -2.74 16 17 C 0.15 3.36 5.39 -2.41 -0.01 3.34 16 18 N -0.60 -15.16 3.26 -169.93 -0.55 -15.71 16 19 C -0.34 -9.54 10.00 -15.06 -0.15 -9.69 16 20 H 0.06 1.77 7.97 -52.48 -0.42 1.35 16 21 C -0.02 -0.69 5.09 -17.43 -0.09 -0.78 16 22 N -0.91 -27.66 13.02 55.49 0.72 -26.94 16 23 Si 1.07 25.17 30.00 -169.99 -5.10 20.07 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.13 2.72 6.88 -3.07 -0.02 2.70 16 28 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 29 H 0.07 0.51 6.44 -51.93 -0.33 0.17 16 30 H 0.08 0.94 6.08 -51.93 -0.32 0.63 16 31 H 0.11 0.88 6.38 -51.93 -0.33 0.55 16 32 H 0.11 0.74 8.01 -51.93 -0.42 0.32 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.07 1.15 6.09 -51.93 -0.32 0.83 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.72 6.81 -51.93 -0.35 0.36 16 39 H 0.05 1.31 8.07 -51.93 -0.42 0.89 16 40 H 0.27 8.22 6.18 -40.82 -0.25 7.96 16 41 H 0.03 0.59 6.94 -51.93 -0.36 0.23 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -33.76 360.41 -8.96 -42.72 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.20 Total: -1.09 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.47 Total: -2.73 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.33 Total: -51.66 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.10 Total: 20.07 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.42 Total: -1.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.76 -8.96 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033383417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.257 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds