Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99836 * 2 1 4 4 O 1.21279 * 120.00100 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.99992 * 0.02562 * 3 2 1 6 6 C 1.50699 * 109.47051 * 180.02562 * 5 3 2 7 7 C 1.38249 * 119.97673 * 265.01962 * 6 5 3 8 8 C 1.38179 * 120.03924 * 179.97438 * 7 6 5 9 9 C 1.38498 * 120.00113 * 359.72343 * 8 7 6 10 10 F 1.35095 * 120.02313 * 180.29715 * 9 8 7 11 11 C 1.38421 * 119.95523 * 0.53545 * 9 8 7 12 12 C 1.38335 * 119.98436 * 84.99530 * 6 5 3 13 13 Cl 1.73598 * 120.00097 * 0.02812 * 12 6 5 14 14 C 1.46497 * 120.00000 * 179.97438 * 2 1 3 15 15 H 1.09003 * 110.63760 * 181.68305 * 14 2 1 16 16 C 1.55152 * 110.72299 * 305.02284 * 14 2 1 17 17 C 1.54911 * 101.58080 * 153.86486 * 16 14 2 18 18 N 1.47420 * 104.83401 * 322.99107 * 17 16 14 19 19 C 1.36932 * 125.65237 * 204.16530 * 18 17 16 20 20 H 1.08000 * 120.00674 * 161.47189 * 19 18 17 21 21 C 1.38816 * 119.99586 * 341.47017 * 19 18 17 22 22 N 1.31627 * 119.99794 * 157.61870 * 21 19 18 23 23 Si 1.86797 * 120.00311 * 337.62181 * 21 19 18 24 24 H 1.48504 * 109.46846 * 84.53186 * 23 21 19 25 25 H 1.48495 * 109.47152 * 204.53140 * 23 21 19 26 26 H 1.48499 * 109.47108 * 324.53344 * 23 21 19 27 27 C 1.47025 * 108.70110 * 24.12896 * 18 17 16 28 28 H 1.08996 * 109.47530 * 89.99967 * 1 2 3 29 29 H 1.09004 * 109.46948 * 210.00332 * 1 2 3 30 30 H 1.09003 * 109.47575 * 329.99807 * 1 2 3 31 31 H 1.09000 * 109.47296 * 59.99969 * 5 3 2 32 32 H 1.09004 * 109.47130 * 300.00145 * 5 3 2 33 33 H 1.08001 * 119.98320 * 359.97438 * 7 6 5 34 34 H 1.07997 * 120.00655 * 180.02562 * 8 7 6 35 35 H 1.08000 * 120.01622 * 179.74812 * 11 9 8 36 36 H 1.08999 * 111.00637 * 271.94055 * 16 14 2 37 37 H 1.08999 * 111.00202 * 35.78983 * 16 14 2 38 38 H 1.08998 * 110.36670 * 204.15383 * 17 16 14 39 39 H 1.08998 * 110.45715 * 81.87708 * 17 16 14 40 40 H 0.96996 * 120.00128 * 180.02562 * 22 21 19 41 41 H 1.08997 * 109.88275 * 239.52069 * 27 18 17 42 42 H 1.09003 * 109.88096 * 118.36188 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4724 0.0006 6 6 2.3645 3.6178 -0.0002 7 6 2.7353 4.2104 1.1926 8 6 3.6335 5.2604 1.1934 9 6 4.1673 5.7161 -0.0006 10 9 5.0501 6.7387 0.0003 11 6 3.7920 5.1262 -1.1952 12 6 2.8923 4.0754 -1.1942 13 17 2.4260 3.3306 -2.6914 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0916 0.0304 16 6 1.7507 -2.1600 1.1893 17 6 2.0638 -3.5780 0.6497 18 7 1.7324 -3.5173 -0.7854 19 6 1.3990 -4.5864 -1.5735 20 1 0.8904 -4.4272 -2.5128 21 6 1.7149 -5.8749 -1.1649 22 7 1.0470 -6.9009 -1.6484 23 14 3.0877 -6.1528 0.0710 24 1 2.5550 -5.9891 1.4475 25 1 3.6285 -7.5263 -0.0904 26 1 4.1708 -5.1638 -0.1615 27 6 1.8182 -2.1186 -1.2304 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 0.7589 2.5299 0.8908 32 1 0.7582 2.5303 -0.8892 33 1 2.3227 3.8525 2.1243 34 1 3.9231 5.7227 2.1255 35 1 4.2045 5.4834 -2.1272 36 1 2.3373 -1.9434 2.0821 37 1 0.6850 -2.0434 1.3862 38 1 1.4431 -4.3204 1.1513 39 1 3.1195 -3.8128 0.7857 40 1 1.2675 -7.8013 -1.3627 41 1 0.8541 -1.7944 -1.6220 42 1 2.5848 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033383420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -23.199715 kcal Electronic energy + Delta-G solvation = -26983.186411 eV Core-core repulsion = 22904.800808 eV Total energy + Delta-G solvation = -4078.385603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.28891 -40.46471 -39.28978 -37.60552 -36.76049 -34.98222 -33.11129 -32.17463 -31.34776 -29.81056 -28.52660 -27.45529 -26.65737 -24.23487 -23.56036 -22.48214 -21.05428 -20.43070 -18.90963 -18.19089 -17.38979 -17.17224 -17.03486 -16.25595 -15.97874 -15.71891 -15.48856 -15.14976 -14.99287 -14.31754 -14.15895 -14.01595 -13.72605 -13.49912 -13.24417 -13.08543 -12.84528 -12.59552 -12.41903 -12.23301 -12.08725 -11.87743 -11.67476 -11.63396 -11.41927 -11.20437 -11.12325 -11.02303 -10.71202 -10.13006 -10.02534 -9.84446 -9.46253 -9.35296 -8.92789 -8.73236 -8.49612 -7.07568 -5.96536 -3.27414 0.58691 0.68755 1.73086 2.60046 2.83819 3.18220 3.33324 3.48447 3.51308 3.82916 4.17168 4.28120 4.47592 4.50704 4.53501 4.68797 4.95689 4.96757 5.01212 5.07383 5.15948 5.22410 5.26312 5.34734 5.46332 5.50426 5.50923 5.52824 5.67209 5.72904 5.86124 5.87685 5.94087 6.20519 6.31032 6.37764 6.50147 6.55892 6.70744 6.76638 7.42720 7.67636 8.16729 8.29002 8.80796 9.66490 10.14107 11.19416 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022415 B = 0.002563 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.853690 B =10922.178904 C =11181.377513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.601 5.601 3 C 0.518 3.482 4 O -0.532 6.532 5 C -0.107 4.107 6 C -0.064 4.064 7 C -0.066 4.066 8 C -0.148 4.148 9 C 0.110 3.890 10 F -0.134 7.134 11 C -0.146 4.146 12 C 0.007 3.993 13 Cl -0.048 7.048 14 C 0.126 3.874 15 H 0.107 0.893 16 C -0.140 4.140 17 C 0.112 3.888 18 N -0.607 5.607 19 C -0.241 4.241 20 H 0.092 0.908 21 C 0.022 3.978 22 N -0.908 5.908 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.302 1.302 26 H -0.276 1.276 27 C 0.129 3.871 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.038 0.962 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 26.897 6.377 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.334 5.334 3 C 0.305 3.695 4 O -0.409 6.409 5 C -0.146 4.146 6 C -0.066 4.066 7 C -0.084 4.084 8 C -0.167 4.167 9 C 0.090 3.910 10 F -0.113 7.113 11 C -0.166 4.166 12 C -0.020 4.020 13 Cl -0.019 7.019 14 C 0.023 3.977 15 H 0.125 0.875 16 C -0.179 4.179 17 C -0.014 4.014 18 N -0.334 5.334 19 C -0.368 4.368 20 H 0.110 0.890 21 C -0.176 4.176 22 N -0.552 5.552 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.230 1.230 26 H -0.202 1.202 27 C 0.003 3.997 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.395 26.608 6.147 27.312 hybrid contribution 0.900 -0.263 0.437 1.035 sum 0.505 26.345 6.584 27.160 Atomic orbital electron populations 1.21861 0.79517 1.03319 1.02459 1.47792 1.07055 1.05674 1.72849 1.20266 0.88011 0.84751 0.76493 1.90722 1.13670 1.87120 1.49374 1.20779 0.97509 0.90341 1.05995 1.19249 0.98716 0.96872 0.91724 1.20823 0.95964 0.94215 0.97399 1.21195 0.99117 0.98939 0.97423 1.17445 0.91533 0.87957 0.94027 1.91524 1.66012 1.56417 1.97329 1.20927 0.99725 0.97420 0.98499 1.20459 0.98223 0.95488 0.87830 1.98405 1.90738 1.81398 1.31376 1.22212 0.97483 0.81609 0.96395 0.87523 1.23115 1.01575 0.96235 0.96967 1.21947 0.98199 0.94857 0.86349 1.44729 1.81813 1.02670 1.04215 1.18621 1.31363 0.83024 1.03829 0.89007 1.24994 0.99078 0.95095 0.98444 1.69838 1.39931 0.98769 1.46637 0.86995 0.84555 0.76029 0.81202 1.21170 1.22990 1.20166 1.21589 0.98846 0.85266 0.94046 0.92092 0.89966 0.91278 0.87286 0.87217 0.84009 0.84004 0.83613 0.91312 0.90592 0.91942 0.95484 0.92672 0.94437 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 9.13 59.85 0.55 1.24 16 2 N -0.60 -7.92 2.88 -171.84 -0.50 -8.41 16 3 C 0.52 6.78 7.67 -10.98 -0.08 6.70 16 4 O -0.53 -9.04 15.40 5.56 0.09 -8.96 16 5 C -0.11 -0.95 3.89 -29.03 -0.11 -1.06 16 6 C -0.06 -0.63 4.38 -104.58 -0.46 -1.08 16 7 C -0.07 -0.54 9.68 -39.60 -0.38 -0.92 16 8 C -0.15 -1.20 10.03 -39.51 -0.40 -1.60 16 9 C 0.11 1.04 7.30 -39.42 -0.29 0.76 16 10 F -0.13 -1.33 17.27 2.25 0.04 -1.29 16 11 C -0.15 -1.42 9.81 -39.48 -0.39 -1.81 16 12 C 0.01 0.07 6.31 -39.51 -0.25 -0.18 16 13 Cl -0.05 -0.53 27.39 -51.86 -1.42 -1.95 16 14 C 0.13 2.11 3.36 -66.10 -0.22 1.88 16 15 H 0.11 1.95 6.99 -51.93 -0.36 1.59 16 16 C -0.14 -2.28 6.61 -24.58 -0.16 -2.44 16 17 C 0.11 2.39 4.70 -2.53 -0.01 2.38 16 18 N -0.61 -14.54 3.21 -170.08 -0.55 -15.09 16 19 C -0.24 -6.81 10.57 -15.06 -0.16 -6.97 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 22 N -0.91 -27.87 13.97 55.49 0.78 -27.09 16 23 Si 0.88 22.61 24.27 -169.99 -4.13 18.48 16 24 H -0.28 -6.94 6.49 56.52 0.37 -6.58 16 25 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 26 H -0.28 -7.07 6.66 56.52 0.38 -6.69 16 27 C 0.13 2.56 6.88 -3.06 -0.02 2.54 16 28 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 29 H 0.08 0.86 6.08 -51.93 -0.32 0.55 16 30 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 31 H 0.11 0.63 7.31 -51.93 -0.38 0.25 16 32 H 0.11 0.87 7.08 -51.93 -0.37 0.50 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.12 6.09 -51.93 -0.32 0.80 16 38 H 0.06 1.41 6.64 -51.93 -0.34 1.06 16 39 H 0.03 0.62 5.57 -51.93 -0.29 0.33 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.04 0.72 6.94 -51.93 -0.36 0.35 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -33.80 354.25 -8.05 -41.84 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -5.21 Total: -2.89 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.48 Total: 0.01 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.27 Total: -50.60 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.13 Total: 18.48 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.42 Total: -1.95 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.80 -8.05 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033383420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.643 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds