Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99354 * 2 1 4 4 O 1.21285 * 119.99329 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00239 * 0.02562 * 3 2 1 6 6 C 1.50700 * 109.46998 * 179.97438 * 5 3 2 7 7 C 1.38271 * 119.97000 * 269.97823 * 6 5 3 8 8 C 1.38196 * 120.04649 * 179.97438 * 7 6 5 9 9 C 1.38445 * 119.98932 * 0.02562 * 8 7 6 10 10 F 1.35095 * 120.02724 * 180.02562 * 9 8 7 11 11 C 1.38545 * 119.93862 * 359.97438 * 9 8 7 12 12 Cl 1.73603 * 120.02217 * 180.02562 * 11 9 8 13 13 C 1.38218 * 119.96934 * 89.99843 * 6 5 3 14 14 C 1.46494 * 120.00314 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.88782 * 180.70124 * 14 2 1 16 16 C 1.55158 * 111.00704 * 56.81835 * 14 2 1 17 17 C 1.54326 * 102.93963 * 277.43055 * 16 14 2 18 18 N 1.47018 * 107.27191 * 337.80515 * 17 16 14 19 19 C 1.36941 * 125.64516 * 178.98630 * 18 17 16 20 20 H 1.08006 * 119.99675 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00391 * 359.96432 * 19 18 17 22 22 N 1.31622 * 119.99557 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00303 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46825 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46816 * 120.00244 * 23 21 19 26 26 H 1.48493 * 109.47292 * 240.00283 * 23 21 19 27 27 C 1.47522 * 108.71776 * 358.94385 * 18 17 16 28 28 H 1.09002 * 109.47161 * 90.00157 * 1 2 3 29 29 H 1.09005 * 109.46649 * 209.99680 * 1 2 3 30 30 H 1.08999 * 109.47816 * 329.99607 * 1 2 3 31 31 H 1.09003 * 109.47245 * 60.00126 * 5 3 2 32 32 H 1.09001 * 109.47147 * 299.99572 * 5 3 2 33 33 H 1.08002 * 119.97643 * 0.02562 * 7 6 5 34 34 H 1.08005 * 120.00053 * 180.29316 * 8 7 6 35 35 H 1.07995 * 119.99507 * 0.02562 * 13 6 5 36 36 H 1.09003 * 110.71657 * 35.79047 * 16 14 2 37 37 H 1.09000 * 110.72045 * 158.89124 * 16 14 2 38 38 H 1.08999 * 109.88462 * 97.22642 * 17 16 14 39 39 H 1.09000 * 109.87670 * 218.22994 * 17 16 14 40 40 H 0.96999 * 119.99925 * 179.97438 * 22 21 19 41 41 H 1.09003 * 110.37155 * 265.30574 * 27 18 17 42 42 H 1.08993 * 110.41090 * 142.95325 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3644 3.6178 0.0011 7 6 2.8129 4.1426 1.1992 8 6 3.7113 5.1927 1.2015 9 6 4.1624 5.7201 0.0035 10 9 5.0410 6.7463 0.0049 11 6 3.7126 5.1939 -1.1966 12 17 4.2773 5.8532 -2.7000 13 6 2.8131 4.1431 -1.1960 14 6 2.1975 -1.2686 -0.0006 15 1 3.2737 -1.0960 0.0120 16 6 1.7892 -2.1462 -1.2132 17 6 0.4934 -2.8280 -0.7256 18 7 0.5123 -2.8008 0.7442 19 6 -0.4695 -3.2898 1.5641 20 1 -0.3607 -3.2222 2.6365 21 6 -1.6045 -3.8722 1.0170 22 7 -1.7368 -3.9549 -0.2900 23 14 -2.9441 -4.5386 2.1354 24 1 -2.5570 -4.3247 3.5530 25 1 -4.2188 -3.8290 1.8582 26 1 -3.1215 -5.9914 1.8841 27 6 1.7643 -2.1604 1.1898 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3635 0.8899 0.5139 31 1 0.7589 2.5298 0.8908 32 1 0.7582 2.5302 -0.8892 33 1 2.4615 3.7310 2.1338 34 1 4.0648 5.5989 2.1377 35 1 2.4616 3.7329 -2.1312 36 1 1.5933 -1.5270 -2.0887 37 1 2.5594 -2.8863 -1.4305 38 1 -0.3745 -2.2821 -1.0954 39 1 0.4611 -3.8585 -1.0793 40 1 -2.5298 -4.3622 -0.6724 41 1 2.5241 -2.9146 1.3950 42 1 1.5852 -1.5506 2.0752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033449285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -38.932613 kcal Electronic energy + Delta-G solvation = -27062.220916 eV Core-core repulsion = 22983.153083 eV Total energy + Delta-G solvation = -4079.067833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.02275 -41.38492 -40.15378 -38.86099 -37.60532 -35.76756 -34.20192 -33.35721 -31.98669 -31.13183 -29.62533 -28.34633 -27.32343 -26.06522 -24.22519 -23.41297 -21.93342 -21.79131 -19.84842 -18.88827 -18.81933 -18.26808 -17.81468 -17.22618 -16.85549 -16.75500 -16.58200 -16.40841 -15.61989 -15.51317 -15.01454 -14.98870 -14.63406 -14.43341 -14.24091 -13.93134 -13.78761 -13.42115 -13.36274 -13.24389 -12.99806 -12.83014 -12.78033 -12.76416 -12.46446 -12.36694 -12.22378 -11.97402 -11.95373 -11.90741 -11.76868 -11.49820 -10.75875 -10.68648 -10.01327 -9.63367 -9.59703 -8.75720 -7.79895 -5.14675 -0.10886 0.05788 0.93663 1.50257 1.52668 1.61052 1.68039 2.03703 2.47949 2.53190 3.03867 3.40093 3.51265 3.64516 3.65786 3.76444 3.95954 4.03859 4.09715 4.11914 4.30187 4.35057 4.47517 4.62477 4.65804 4.67838 4.75281 4.82291 4.84985 4.88907 4.94121 5.02328 5.05216 5.08569 5.35236 5.37811 5.52680 5.64999 5.67926 5.72132 5.84502 6.23129 6.57896 7.15461 7.23526 7.80654 8.45207 9.29699 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002343 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.631915 B =11947.110320 C =12254.596734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.590 5.590 3 C 0.512 3.488 4 O -0.580 6.580 5 C -0.094 4.094 6 C -0.064 4.064 7 C -0.072 4.072 8 C -0.137 4.137 9 C 0.087 3.913 10 F -0.137 7.137 11 C -0.085 4.085 12 Cl -0.058 7.058 13 C -0.076 4.076 14 C 0.134 3.866 15 H 0.104 0.896 16 C -0.142 4.142 17 C 0.187 3.813 18 N -0.614 5.614 19 C -0.234 4.234 20 H 0.080 0.920 21 C -0.056 4.056 22 N -0.945 5.945 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.300 1.300 27 C 0.125 3.875 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.001 0.999 40 H 0.246 0.754 41 H 0.032 0.968 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.773 19.293 0.042 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.321 5.321 3 C 0.302 3.698 4 O -0.461 6.461 5 C -0.133 4.133 6 C -0.065 4.065 7 C -0.090 4.090 8 C -0.156 4.156 9 C 0.067 3.933 10 F -0.116 7.116 11 C -0.113 4.113 12 Cl -0.029 7.029 13 C -0.094 4.094 14 C 0.029 3.971 15 H 0.121 0.879 16 C -0.181 4.181 17 C 0.063 3.937 18 N -0.341 5.341 19 C -0.363 4.363 20 H 0.098 0.902 21 C -0.250 4.250 22 N -0.594 5.594 23 Si 0.800 3.200 24 H -0.194 1.194 25 H -0.218 1.218 26 H -0.228 1.228 27 C -0.001 4.001 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.167 0.833 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.284 19.285 -0.098 20.615 hybrid contribution -0.543 -0.698 -0.004 0.885 sum 6.741 18.586 -0.102 19.772 Atomic orbital electron populations 1.22194 0.77986 1.05379 1.02276 1.47746 1.07833 1.04886 1.71625 1.21034 0.87670 0.85782 0.75331 1.90683 1.15434 1.87861 1.52082 1.20768 0.97048 0.87247 1.08276 1.19506 0.98132 0.96154 0.92719 1.21318 0.94680 0.93925 0.99031 1.21370 0.99067 0.98145 0.96969 1.17667 0.92989 0.88899 0.93727 1.91505 1.66404 1.56318 1.97341 1.21059 1.02992 1.00604 0.86598 1.98377 1.88407 1.85146 1.31001 1.20976 0.95008 0.93505 0.99943 1.22015 0.96546 0.83104 0.95430 0.87859 1.23100 0.98743 0.98734 0.97503 1.20941 0.93401 0.96314 0.83069 1.44772 1.17923 1.69104 1.02256 1.19353 0.96099 1.31186 0.89631 0.90231 1.25467 1.00461 1.01965 0.97074 1.70161 1.28755 1.50400 1.10072 0.85135 0.79323 0.77025 0.78563 1.19350 1.21774 1.22765 1.22002 0.88488 0.93813 0.95765 0.92962 0.89762 0.88871 0.84657 0.85358 0.82126 0.81471 0.83288 0.90630 0.90424 0.95035 0.98040 0.94473 0.95034 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.82 8.48 127.77 1.08 2.90 16 2 N -0.59 -17.17 2.91 -814.82 -2.37 -19.54 16 3 C 0.51 13.54 7.67 87.66 0.67 14.21 16 4 O -0.58 -19.38 15.41 -3.05 -0.05 -19.43 16 5 C -0.09 -1.59 4.38 29.10 0.13 -1.46 16 6 C -0.06 -1.18 4.37 -19.86 -0.09 -1.27 16 7 C -0.07 -1.17 9.70 22.27 0.22 -0.95 16 8 C -0.14 -2.29 10.03 22.31 0.22 -2.07 16 9 C 0.09 1.83 7.28 22.39 0.16 1.99 16 10 F -0.14 -3.08 16.84 44.97 0.76 -2.32 16 11 C -0.09 -1.83 6.33 22.36 0.14 -1.69 16 12 Cl -0.06 -1.23 28.62 -2.72 -0.08 -1.31 16 13 C -0.08 -1.50 9.48 22.28 0.21 -1.29 16 14 C 0.13 4.46 3.66 46.39 0.17 4.63 16 15 H 0.10 3.43 7.01 -2.38 -0.02 3.41 16 16 C -0.14 -4.94 6.43 31.78 0.20 -4.74 16 17 C 0.19 8.42 4.30 86.73 0.37 8.79 16 18 N -0.61 -28.32 1.90 -691.74 -1.31 -29.63 16 19 C -0.23 -11.93 9.87 84.03 0.83 -11.10 16 20 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 21 C -0.06 -2.94 5.49 84.86 0.47 -2.48 16 22 N -0.94 -52.54 10.31 21.65 0.22 -52.32 16 23 Si 0.97 42.90 29.55 68.60 2.03 44.93 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 27 C 0.13 4.78 6.50 86.84 0.56 5.34 16 28 H 0.05 1.45 7.99 -2.39 -0.02 1.43 16 29 H 0.08 3.22 4.67 -2.38 -0.01 3.20 16 30 H 0.09 1.89 6.44 -2.39 -0.02 1.88 16 31 H 0.14 1.60 7.34 -2.39 -0.02 1.58 16 32 H 0.13 1.66 8.05 -2.39 -0.02 1.64 16 33 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.03 1.53 6.24 -2.39 -0.01 1.52 16 39 H 0.00 0.07 7.50 -2.39 -0.02 0.05 16 40 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 41 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -64.49 358.96 5.61 -58.88 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.05 Total: 9.91 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.36 Total: 10.83 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -3.46 Total: -101.49 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.76 Total: -2.32 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -64.49 5.61 -58.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033449285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.951 kcal (2) G-P(sol) polarization free energy of solvation -64.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds