Wall clock time and date at job start Sat Apr 11 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99906 * 2 1 4 4 O 1.21275 * 119.99917 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99887 * 0.02562 * 3 2 1 6 6 C 1.50702 * 109.47073 * 179.97438 * 5 3 2 7 7 C 1.38266 * 119.97638 * 270.02397 * 6 5 3 8 8 C 1.38218 * 120.06003 * 179.97438 * 7 6 5 9 9 C 1.38325 * 120.01213 * 359.97438 * 8 7 6 10 10 Cl 1.73602 * 120.02202 * 180.02562 * 9 8 7 11 11 C 1.38542 * 119.95417 * 0.02562 * 9 8 7 12 12 F 1.35097 * 120.03234 * 180.02562 * 11 9 8 13 13 C 1.38199 * 119.97483 * 90.00102 * 6 5 3 14 14 C 1.46496 * 120.00112 * 180.02562 * 2 1 3 15 15 H 1.09005 * 110.88712 * 180.69873 * 14 2 1 16 16 C 1.55154 * 111.00412 * 56.82085 * 14 2 1 17 17 C 1.54327 * 102.94218 * 277.42549 * 16 14 2 18 18 N 1.47022 * 107.26915 * 337.81159 * 17 16 14 19 19 C 1.36943 * 125.64546 * 178.97828 * 18 17 16 20 20 H 1.07997 * 119.99770 * 179.97438 * 19 18 17 21 21 C 1.38805 * 120.00141 * 359.97048 * 19 18 17 22 22 N 1.31618 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46987 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47310 * 120.00008 * 23 21 19 26 26 H 1.48503 * 109.47436 * 239.99875 * 23 21 19 27 27 C 1.47521 * 108.71516 * 358.93583 * 18 17 16 28 28 H 1.08999 * 109.47021 * 89.99893 * 1 2 3 29 29 H 1.08993 * 109.47092 * 209.99879 * 1 2 3 30 30 H 1.08999 * 109.46668 * 329.99749 * 1 2 3 31 31 H 1.08996 * 109.47183 * 60.00116 * 5 3 2 32 32 H 1.08999 * 109.47313 * 299.99866 * 5 3 2 33 33 H 1.07993 * 119.96616 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.99351 * 180.27533 * 8 7 6 35 35 H 1.08003 * 120.00579 * 359.97438 * 13 6 5 36 36 H 1.09002 * 110.72564 * 35.78983 * 16 14 2 37 37 H 1.09003 * 110.72038 * 158.88936 * 16 14 2 38 38 H 1.09004 * 109.87988 * 97.22737 * 17 16 14 39 39 H 1.08998 * 109.88679 * 218.23759 * 17 16 14 40 40 H 0.96999 * 120.00049 * 180.02562 * 22 21 19 41 41 H 1.09001 * 110.37305 * 265.30884 * 27 18 17 42 42 H 1.09007 * 110.40716 * 142.95608 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 6 2.8139 4.1420 1.1990 8 6 3.7125 5.1923 1.2015 9 6 4.1637 5.7196 0.0050 10 17 5.2928 7.0383 0.0078 11 6 3.7138 5.1948 -1.1957 12 9 4.1538 5.7083 -2.3652 13 6 2.8133 4.1431 -1.1958 14 6 2.1975 -1.2687 -0.0006 15 1 3.2738 -1.0961 0.0119 16 6 1.7891 -2.1461 -1.2133 17 6 0.4934 -2.8280 -0.7257 18 7 0.5122 -2.8008 0.7441 19 6 -0.4696 -3.2897 1.5640 20 1 -0.3609 -3.2221 2.6364 21 6 -1.6045 -3.8721 1.0169 22 7 -1.7369 -3.9549 -0.2900 23 14 -2.9441 -4.5384 2.1353 24 1 -2.5572 -4.3244 3.5529 25 1 -4.2189 -3.8288 1.8581 26 1 -3.1217 -5.9912 1.8840 27 6 1.7644 -2.1605 1.1896 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5302 -0.8891 33 1 2.4624 3.7305 2.1336 34 1 4.0662 5.5980 2.1378 35 1 2.4625 3.7326 -2.1311 36 1 1.5932 -1.5270 -2.0888 37 1 2.5593 -2.8862 -1.4306 38 1 -0.3746 -2.2820 -1.0955 39 1 0.4610 -3.8585 -1.0793 40 1 -2.5301 -4.3616 -0.6724 41 1 2.5241 -2.9147 1.3948 42 1 1.5852 -1.5506 2.0752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033450095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:07 Heat of formation + Delta-G solvation = -24.995883 kcal Electronic energy + Delta-G solvation = -27061.230272 eV Core-core repulsion = 22982.766782 eV Total energy + Delta-G solvation = -4078.463491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.15917 -40.27854 -39.16119 -37.49168 -36.78398 -34.31379 -32.99299 -32.06736 -30.96523 -29.45261 -28.26223 -27.47539 -25.91729 -24.37409 -23.30339 -22.50416 -20.63182 -20.14670 -18.63202 -17.68532 -17.15699 -16.99738 -16.95057 -16.62438 -15.97774 -15.66370 -15.30181 -14.75978 -14.47904 -14.14882 -13.91064 -13.84939 -13.49103 -13.23593 -13.09414 -12.84921 -12.47589 -12.16737 -12.03316 -11.88939 -11.78488 -11.71206 -11.62557 -11.51865 -11.18938 -11.00808 -10.97548 -10.79683 -10.32478 -10.17882 -9.99079 -9.74305 -9.54335 -9.21587 -8.82367 -8.77294 -8.25499 -6.90463 -5.82598 -3.17159 0.66919 0.84052 1.73578 2.78515 3.02586 3.32026 3.39058 3.40773 3.43658 3.80262 4.27351 4.39516 4.40283 4.74930 4.78253 4.89018 5.09961 5.21138 5.30899 5.38041 5.38549 5.45697 5.54617 5.63097 5.67655 5.68012 5.76316 5.82988 6.03126 6.13238 6.15973 6.29286 6.41614 6.45226 6.48622 6.56928 6.72875 7.01546 7.46827 7.51345 7.72337 7.75839 8.13147 8.38309 9.10714 9.70023 10.35330 11.28297 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026907 B = 0.002262 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.370200 B =12376.988480 C =12639.818025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.586 5.586 3 C 0.511 3.489 4 O -0.548 6.548 5 C -0.105 4.105 6 C -0.024 4.024 7 C -0.103 4.103 8 C -0.081 4.081 9 C -0.078 4.078 10 Cl -0.057 7.057 11 C 0.111 3.889 12 F -0.129 7.129 13 C -0.128 4.128 14 C 0.123 3.877 15 H 0.099 0.901 16 C -0.155 4.155 17 C 0.174 3.826 18 N -0.603 5.603 19 C -0.232 4.232 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.125 3.875 28 H 0.050 0.950 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.253 0.747 41 H 0.031 0.969 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 18.227 -0.148 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.317 5.317 3 C 0.299 3.701 4 O -0.426 6.426 5 C -0.145 4.145 6 C -0.024 4.024 7 C -0.121 4.121 8 C -0.099 4.099 9 C -0.105 4.105 10 Cl -0.028 7.028 11 C 0.090 3.910 12 F -0.107 7.107 13 C -0.147 4.147 14 C 0.019 3.981 15 H 0.117 0.883 16 C -0.195 4.195 17 C 0.049 3.951 18 N -0.330 5.330 19 C -0.360 4.360 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C -0.002 4.002 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.719 18.230 -0.217 19.798 hybrid contribution -0.666 -0.308 0.216 0.765 sum 7.053 17.921 -0.001 19.259 Atomic orbital electron populations 1.22330 0.78382 1.05648 1.02239 1.47709 1.07720 1.05069 1.71231 1.20306 0.87901 0.85008 0.76914 1.90691 1.13764 1.87373 1.50783 1.20769 0.97343 0.90372 1.06025 1.19303 0.96057 0.94699 0.92371 1.21059 0.97039 0.95663 0.98345 1.20918 0.96589 0.96062 0.96360 1.20967 0.99427 0.95960 0.94158 1.98379 1.59642 1.45847 1.98901 1.17308 0.97680 0.95671 0.80299 1.91534 1.87948 1.85826 1.45387 1.20970 0.98012 0.95857 0.99878 1.22252 0.96210 0.82466 0.97191 0.88273 1.23242 1.00827 0.98537 0.96859 1.21236 0.91878 0.98616 0.83330 1.44640 1.17236 1.69128 1.01995 1.19081 0.95600 1.32108 0.89175 0.90369 1.24792 0.98458 1.00986 0.95959 1.69972 1.28573 1.49353 1.08740 0.86073 0.81768 0.78515 0.79547 1.20527 1.21719 1.21767 1.21922 0.89946 0.93594 0.94736 0.93106 0.85617 0.92616 0.87204 0.87460 0.84325 0.83922 0.83876 0.91950 0.91399 0.93055 0.93970 0.93705 0.95136 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 8.48 59.85 0.51 1.37 16 2 N -0.59 -9.20 2.91 -171.49 -0.50 -9.70 16 3 C 0.51 7.51 7.67 -10.99 -0.08 7.42 16 4 O -0.55 -9.78 15.41 5.56 0.09 -9.69 16 5 C -0.11 -1.09 4.38 -29.04 -0.13 -1.22 16 6 C -0.02 -0.25 4.37 -104.62 -0.46 -0.71 16 7 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 8 C -0.08 -0.76 9.83 -39.56 -0.39 -1.15 16 9 C -0.08 -0.85 6.33 -39.44 -0.25 -1.10 16 10 Cl -0.06 -0.58 28.62 -51.86 -1.48 -2.06 16 11 C 0.11 1.29 7.28 -39.39 -0.29 1.01 16 12 F -0.13 -1.58 16.84 2.25 0.04 -1.55 16 13 C -0.13 -1.42 9.68 -39.52 -0.38 -1.80 16 14 C 0.12 2.14 3.66 -65.79 -0.24 1.90 16 15 H 0.10 1.74 7.01 -51.93 -0.36 1.37 16 16 C -0.16 -2.78 6.43 -24.90 -0.16 -2.94 16 17 C 0.17 3.84 4.30 -3.06 -0.01 3.83 16 18 N -0.60 -13.87 1.90 -169.99 -0.32 -14.20 16 19 C -0.23 -5.90 9.87 -15.06 -0.15 -6.05 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 22 N -0.92 -25.02 10.31 55.49 0.57 -24.44 16 23 Si 0.91 20.78 29.55 -169.99 -5.02 15.76 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.12 2.43 6.50 -2.48 -0.02 2.42 16 28 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 29 H 0.13 2.46 4.67 -51.93 -0.24 2.21 16 30 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 31 H 0.11 0.92 7.34 -51.93 -0.38 0.54 16 32 H 0.11 0.92 8.05 -51.93 -0.42 0.50 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 1.22 6.24 -51.93 -0.32 0.89 16 39 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 40 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.86 8.14 -51.92 -0.42 0.43 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -29.46 358.96 -9.13 -38.58 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.37 Total: 0.52 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.53 Total: 1.37 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.25 Total: -48.34 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.48 Total: -2.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.46 -9.13 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033450095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.588 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds