Wall clock time and date at job start Sat Apr 11 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99906 * 2 1 4 4 O 1.21275 * 119.99917 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99887 * 0.02562 * 3 2 1 6 6 C 1.50702 * 109.47073 * 179.97438 * 5 3 2 7 7 C 1.38266 * 119.97638 * 270.02397 * 6 5 3 8 8 C 1.38218 * 120.06003 * 179.97438 * 7 6 5 9 9 C 1.38325 * 120.01213 * 359.97438 * 8 7 6 10 10 Cl 1.73602 * 120.02202 * 180.02562 * 9 8 7 11 11 C 1.38542 * 119.95417 * 0.02562 * 9 8 7 12 12 F 1.35097 * 120.03234 * 180.02562 * 11 9 8 13 13 C 1.38199 * 119.97483 * 90.00102 * 6 5 3 14 14 C 1.46496 * 120.00112 * 180.02562 * 2 1 3 15 15 H 1.09005 * 110.88712 * 180.69873 * 14 2 1 16 16 C 1.55154 * 111.00412 * 56.82085 * 14 2 1 17 17 C 1.54327 * 102.94218 * 277.42549 * 16 14 2 18 18 N 1.47022 * 107.26915 * 337.81159 * 17 16 14 19 19 C 1.36943 * 125.64546 * 178.97828 * 18 17 16 20 20 H 1.07997 * 119.99770 * 179.97438 * 19 18 17 21 21 C 1.38805 * 120.00141 * 359.97048 * 19 18 17 22 22 N 1.31618 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46987 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47310 * 120.00008 * 23 21 19 26 26 H 1.48503 * 109.47436 * 239.99875 * 23 21 19 27 27 C 1.47521 * 108.71516 * 358.93583 * 18 17 16 28 28 H 1.08999 * 109.47021 * 89.99893 * 1 2 3 29 29 H 1.08993 * 109.47092 * 209.99879 * 1 2 3 30 30 H 1.08999 * 109.46668 * 329.99749 * 1 2 3 31 31 H 1.08996 * 109.47183 * 60.00116 * 5 3 2 32 32 H 1.08999 * 109.47313 * 299.99866 * 5 3 2 33 33 H 1.07993 * 119.96616 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.99351 * 180.27533 * 8 7 6 35 35 H 1.08003 * 120.00579 * 359.97438 * 13 6 5 36 36 H 1.09002 * 110.72564 * 35.78983 * 16 14 2 37 37 H 1.09003 * 110.72038 * 158.88936 * 16 14 2 38 38 H 1.09004 * 109.87988 * 97.22737 * 17 16 14 39 39 H 1.08998 * 109.88679 * 218.23759 * 17 16 14 40 40 H 0.96999 * 120.00049 * 180.02562 * 22 21 19 41 41 H 1.09001 * 110.37305 * 265.30884 * 27 18 17 42 42 H 1.09007 * 110.40716 * 142.95608 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 6 2.8139 4.1420 1.1990 8 6 3.7125 5.1923 1.2015 9 6 4.1637 5.7196 0.0050 10 17 5.2928 7.0383 0.0078 11 6 3.7138 5.1948 -1.1957 12 9 4.1538 5.7083 -2.3652 13 6 2.8133 4.1431 -1.1958 14 6 2.1975 -1.2687 -0.0006 15 1 3.2738 -1.0961 0.0119 16 6 1.7891 -2.1461 -1.2133 17 6 0.4934 -2.8280 -0.7257 18 7 0.5122 -2.8008 0.7441 19 6 -0.4696 -3.2897 1.5640 20 1 -0.3609 -3.2221 2.6364 21 6 -1.6045 -3.8721 1.0169 22 7 -1.7369 -3.9549 -0.2900 23 14 -2.9441 -4.5384 2.1353 24 1 -2.5572 -4.3244 3.5529 25 1 -4.2189 -3.8288 1.8581 26 1 -3.1217 -5.9912 1.8840 27 6 1.7644 -2.1605 1.1896 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5302 -0.8891 33 1 2.4624 3.7305 2.1336 34 1 4.0662 5.5980 2.1378 35 1 2.4625 3.7326 -2.1311 36 1 1.5932 -1.5270 -2.0888 37 1 2.5593 -2.8862 -1.4306 38 1 -0.3746 -2.2820 -1.0955 39 1 0.4610 -3.8585 -1.0793 40 1 -2.5301 -4.3616 -0.6724 41 1 2.5241 -2.9147 1.3948 42 1 1.5852 -1.5506 2.0752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033450095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:07 Heat of formation + Delta-G solvation = -39.058393 kcal Electronic energy + Delta-G solvation = -27061.840069 eV Core-core repulsion = 22982.766782 eV Total energy + Delta-G solvation = -4079.073287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.03682 -41.39550 -40.15237 -38.88538 -37.60765 -35.77994 -34.22623 -33.44410 -31.74257 -31.14429 -29.66508 -28.52862 -27.34042 -26.09028 -24.08000 -23.47470 -21.94163 -21.81477 -19.88196 -18.88467 -18.53039 -18.24717 -17.82032 -17.43381 -17.06172 -16.77733 -16.63069 -16.43113 -15.62809 -15.55608 -15.09185 -14.81138 -14.52941 -14.39488 -14.25211 -13.94852 -13.80123 -13.38812 -13.36306 -13.30126 -13.10799 -12.82267 -12.77276 -12.69909 -12.48642 -12.36280 -12.25124 -11.96693 -11.95614 -11.91521 -11.77494 -11.50403 -10.77015 -10.69159 -10.00328 -9.65447 -9.61218 -8.76373 -7.80372 -5.15233 -0.13238 0.07326 0.94585 1.50084 1.52465 1.60911 1.66288 2.02246 2.47456 2.52885 3.00426 3.39678 3.48925 3.63166 3.66004 3.75703 3.95141 4.04262 4.08962 4.14049 4.33526 4.34425 4.47031 4.51428 4.66238 4.70608 4.75064 4.81125 4.82330 4.92661 4.93952 5.01474 5.02151 5.07823 5.35132 5.37399 5.52325 5.64597 5.67267 5.71393 5.83870 6.22670 6.56347 7.14990 7.21716 7.80175 8.44694 9.29320 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026907 B = 0.002262 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.370200 B =12376.988480 C =12639.818025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.590 5.590 3 C 0.513 3.487 4 O -0.580 6.580 5 C -0.097 4.097 6 C -0.034 4.034 7 C -0.102 4.102 8 C -0.079 4.079 9 C -0.087 4.087 10 Cl -0.056 7.056 11 C 0.089 3.911 12 F -0.138 7.138 13 C -0.135 4.135 14 C 0.134 3.866 15 H 0.104 0.896 16 C -0.142 4.142 17 C 0.187 3.813 18 N -0.614 5.614 19 C -0.234 4.234 20 H 0.080 0.920 21 C -0.056 4.056 22 N -0.946 5.946 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.300 1.300 27 C 0.125 3.875 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.002 0.998 40 H 0.246 0.754 41 H 0.032 0.968 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 19.687 1.045 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.321 5.321 3 C 0.303 3.697 4 O -0.461 6.461 5 C -0.136 4.136 6 C -0.035 4.035 7 C -0.120 4.120 8 C -0.098 4.098 9 C -0.114 4.114 10 Cl -0.027 7.027 11 C 0.069 3.931 12 F -0.117 7.117 13 C -0.154 4.154 14 C 0.029 3.971 15 H 0.122 0.878 16 C -0.181 4.181 17 C 0.063 3.937 18 N -0.341 5.341 19 C -0.363 4.363 20 H 0.098 0.902 21 C -0.250 4.250 22 N -0.595 5.595 23 Si 0.800 3.200 24 H -0.193 1.193 25 H -0.218 1.218 26 H -0.228 1.228 27 C -0.001 4.001 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.169 0.831 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.678 19.717 0.994 21.182 hybrid contribution -0.585 -0.739 -0.118 0.950 sum 7.093 18.978 0.877 20.279 Atomic orbital electron populations 1.22200 0.77959 1.05423 1.02290 1.47747 1.07854 1.04884 1.71595 1.20984 0.87644 0.85750 0.75366 1.90683 1.15429 1.87855 1.52088 1.20807 0.97118 0.87306 1.08393 1.19430 0.96472 0.94990 0.92558 1.21385 0.96416 0.95265 0.98941 1.21217 0.96088 0.95735 0.96730 1.21174 0.99598 0.96154 0.94521 1.98376 1.59638 1.45823 1.98910 1.17543 0.98666 0.96532 0.80338 1.91503 1.88187 1.86057 1.45948 1.21139 0.97880 0.95715 1.00631 1.22016 0.96544 0.83072 0.95446 0.87846 1.23104 0.98766 0.98748 0.97502 1.20943 0.93386 0.96321 0.83077 1.44779 1.17930 1.69119 1.02257 1.19357 0.96093 1.31162 0.89650 0.90187 1.25472 1.00490 1.01965 0.97080 1.70159 1.28750 1.50450 1.10102 0.85132 0.79304 0.77020 0.78568 1.19315 1.21765 1.22765 1.22006 0.88494 0.93824 0.95762 0.92963 0.89713 0.88839 0.84492 0.85293 0.82185 0.81639 0.83138 0.90646 0.90392 0.95048 0.98021 0.94457 0.94984 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.81 8.48 127.77 1.08 2.90 16 2 N -0.59 -17.21 2.91 -814.86 -2.37 -19.58 16 3 C 0.51 13.62 7.67 87.66 0.67 14.30 16 4 O -0.58 -19.46 15.41 -3.01 -0.05 -19.51 16 5 C -0.10 -1.65 4.38 29.10 0.13 -1.52 16 6 C -0.03 -0.63 4.37 -19.87 -0.09 -0.72 16 7 C -0.10 -1.67 9.70 22.27 0.22 -1.45 16 8 C -0.08 -1.30 9.83 22.29 0.22 -1.08 16 9 C -0.09 -1.77 6.33 22.36 0.14 -1.63 16 10 Cl -0.06 -1.10 28.62 -2.72 -0.08 -1.17 16 11 C 0.09 2.00 7.28 22.39 0.16 2.16 16 12 F -0.14 -3.37 16.84 44.97 0.76 -2.61 16 13 C -0.13 -2.75 9.68 22.31 0.22 -2.53 16 14 C 0.13 4.47 3.66 46.38 0.17 4.64 16 15 H 0.10 3.44 7.01 -2.38 -0.02 3.42 16 16 C -0.14 -4.97 6.43 31.78 0.20 -4.76 16 17 C 0.19 8.43 4.30 86.73 0.37 8.80 16 18 N -0.61 -28.36 1.90 -691.74 -1.31 -29.67 16 19 C -0.23 -11.93 9.87 84.03 0.83 -11.11 16 20 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.06 -2.97 5.49 84.86 0.47 -2.50 16 22 N -0.95 -52.68 10.31 21.65 0.22 -52.45 16 23 Si 0.97 42.91 29.55 68.60 2.03 44.94 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 27 C 0.13 4.77 6.50 86.84 0.56 5.34 16 28 H 0.05 1.46 7.98 -2.39 -0.02 1.44 16 29 H 0.08 3.23 4.67 -2.39 -0.01 3.22 16 30 H 0.09 1.90 6.44 -2.39 -0.02 1.88 16 31 H 0.14 1.62 7.34 -2.39 -0.02 1.60 16 32 H 0.13 1.68 8.05 -2.39 -0.02 1.66 16 33 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.03 1.53 6.24 -2.39 -0.01 1.51 16 39 H 0.00 0.08 7.50 -2.39 -0.02 0.06 16 40 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -64.66 358.96 5.61 -59.05 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.05 Total: 10.18 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 5.36 Total: 10.84 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -3.46 Total: -101.71 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.76 Total: -2.61 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.17 kcal Total: -64.66 5.61 -59.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033450095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.993 kcal (2) G-P(sol) polarization free energy of solvation -64.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds