Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 119.99594 * 2 1 4 4 O 1.21283 * 120.00089 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00335 * 0.02562 * 3 2 1 6 6 C 1.50705 * 109.47082 * 179.97438 * 5 3 2 7 7 C 1.38267 * 119.97109 * 90.00132 * 6 5 3 8 8 C 1.38215 * 120.05425 * 179.97438 * 7 6 5 9 9 C 1.38325 * 120.01823 * 359.97438 * 8 7 6 10 10 Cl 1.73598 * 120.02467 * 180.02562 * 9 8 7 11 11 C 1.38549 * 119.94711 * 359.97438 * 9 8 7 12 12 F 1.35097 * 120.02659 * 179.97438 * 11 9 8 13 13 C 1.38190 * 119.97696 * 269.72281 * 6 5 3 14 14 C 1.46501 * 120.00098 * 179.97438 * 2 1 3 15 15 H 1.08995 * 110.63969 * 181.69118 * 14 2 1 16 16 C 1.55151 * 110.71907 * 305.02571 * 14 2 1 17 17 C 1.54913 * 101.58010 * 153.86596 * 16 14 2 18 18 N 1.47425 * 104.83143 * 322.98863 * 17 16 14 19 19 C 1.36936 * 125.64802 * 204.16423 * 18 17 16 20 20 H 1.07995 * 119.99752 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99911 * 359.95952 * 19 18 17 22 22 N 1.31619 * 120.00201 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47491 * 59.99723 * 23 21 19 25 25 H 1.48505 * 109.47479 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47212 * 299.99854 * 23 21 19 27 27 C 1.47025 * 108.70153 * 24.12835 * 18 17 16 28 28 H 1.09001 * 109.47060 * 90.00388 * 1 2 3 29 29 H 1.09004 * 109.47073 * 209.99877 * 1 2 3 30 30 H 1.09000 * 109.47212 * 329.99960 * 1 2 3 31 31 H 1.09000 * 109.47188 * 299.99755 * 5 3 2 32 32 H 1.08996 * 109.47042 * 59.99980 * 5 3 2 33 33 H 1.07995 * 119.97035 * 359.97206 * 7 6 5 34 34 H 1.08001 * 119.99168 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.00633 * 0.02562 * 13 6 5 36 36 H 1.09001 * 111.00847 * 271.93818 * 16 14 2 37 37 H 1.09000 * 111.00929 * 35.79336 * 16 14 2 38 38 H 1.09006 * 110.36471 * 204.15075 * 17 16 14 39 39 H 1.08997 * 110.46197 * 81.87719 * 17 16 14 40 40 H 0.96997 * 120.00289 * 180.02562 * 22 21 19 41 41 H 1.08995 * 109.88227 * 239.52141 * 27 18 17 42 42 H 1.08999 * 109.88068 * 118.35458 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 6 2.8135 4.1434 -1.1964 8 6 3.7112 5.1942 -1.1980 9 6 4.1612 5.7217 -0.0010 10 17 5.2883 7.0421 -0.0028 11 6 3.7109 5.1961 1.1992 12 9 4.1498 5.7096 2.3691 13 6 2.8089 4.1458 1.1984 14 6 2.1976 -1.2687 0.0006 15 1 3.2726 -1.0916 0.0306 16 6 1.7507 -2.1600 1.1893 17 6 2.0639 -3.5780 0.6498 18 7 1.7325 -3.5173 -0.7855 19 6 1.3992 -4.5865 -1.5735 20 1 1.1719 -4.4369 -2.6186 21 6 1.3538 -5.8625 -1.0290 22 7 1.6306 -6.0448 0.2448 23 14 0.8998 -7.3211 -2.1041 24 1 1.8772 -7.4400 -3.2158 25 1 0.9224 -8.5626 -1.2895 26 1 -0.4619 -7.1203 -2.6616 27 6 1.8183 -2.1186 -1.2304 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 0.7583 2.5303 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 2.4623 3.7323 -2.1313 34 1 4.0614 5.6037 -2.1340 35 1 2.4547 3.7374 2.1333 36 1 2.3373 -1.9434 2.0822 37 1 0.6850 -2.0435 1.3861 38 1 1.4431 -4.3204 1.1514 39 1 3.1195 -3.8129 0.7858 40 1 1.5992 -6.9365 0.6252 41 1 0.8542 -1.7944 -1.6220 42 1 2.5850 -2.0205 -1.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033450096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -25.935212 kcal Electronic energy + Delta-G solvation = -26590.558480 eV Core-core repulsion = 22512.054256 eV Total energy + Delta-G solvation = -4078.504223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.21420 -40.37782 -39.18984 -37.39878 -36.83032 -34.85345 -33.07682 -32.06744 -31.03754 -29.38906 -28.30420 -27.36266 -26.39348 -24.47236 -23.37150 -22.47543 -20.48979 -20.26338 -18.80194 -17.77457 -17.28324 -17.09512 -16.99107 -16.70606 -16.05149 -15.80221 -15.38411 -14.78941 -14.53376 -14.24942 -14.00896 -13.81195 -13.64600 -13.28068 -13.18972 -13.00370 -12.63164 -12.54970 -12.24130 -12.04188 -11.89351 -11.75422 -11.65701 -11.55203 -11.24255 -11.08325 -10.89007 -10.82619 -10.46561 -10.18019 -9.87206 -9.76151 -9.59717 -9.29183 -8.89944 -8.69844 -8.42367 -6.89512 -5.69754 -3.12353 0.59447 0.77262 1.68669 2.63425 2.89505 3.26485 3.37639 3.42170 3.43423 3.73620 4.17665 4.29821 4.45634 4.55638 4.68333 4.80087 4.95823 5.09614 5.11508 5.30422 5.33116 5.38583 5.47476 5.49942 5.54881 5.59804 5.66220 5.70536 5.70940 5.88628 6.03634 6.16432 6.31557 6.35089 6.50866 6.51881 6.64538 6.91958 7.43909 7.51969 7.57309 7.79439 8.21333 8.30697 9.16731 9.77373 10.41358 11.33916 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.002023 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.352129 B =13836.773913 C =13988.683541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.600 5.600 3 C 0.512 3.488 4 O -0.536 6.536 5 C -0.105 4.105 6 C -0.027 4.027 7 C -0.102 4.102 8 C -0.080 4.080 9 C -0.076 4.076 10 Cl -0.055 7.055 11 C 0.111 3.889 12 F -0.128 7.128 13 C -0.128 4.128 14 C 0.126 3.874 15 H 0.103 0.897 16 C -0.153 4.153 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.130 3.870 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.015 0.985 40 H 0.253 0.747 41 H 0.027 0.973 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 24.273 0.787 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.332 5.332 3 C 0.300 3.700 4 O -0.413 6.413 5 C -0.144 4.144 6 C -0.028 4.028 7 C -0.121 4.121 8 C -0.099 4.099 9 C -0.104 4.104 10 Cl -0.026 7.026 11 C 0.091 3.909 12 F -0.106 7.106 13 C -0.147 4.147 14 C 0.023 3.977 15 H 0.121 0.879 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.746 3.254 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.003 3.997 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.485 24.162 0.850 24.222 hybrid contribution -0.033 -0.603 -0.365 0.706 sum -1.518 23.559 0.484 23.613 Atomic orbital electron populations 1.21844 0.79664 1.03388 1.02199 1.47867 1.07043 1.05922 1.72385 1.20318 0.88038 0.84859 0.76823 1.90733 1.13736 1.87176 1.49627 1.20782 0.97401 0.90365 1.05894 1.19262 0.96338 0.94762 0.92434 1.21053 0.97051 0.95652 0.98308 1.20930 0.96519 0.96037 0.96404 1.20987 0.99355 0.95904 0.94159 1.98384 1.59724 1.45592 1.98897 1.17309 0.97614 0.95654 0.80325 1.91539 1.87965 1.85808 1.45311 1.20956 0.98060 0.95884 0.99813 1.22268 0.97131 0.81251 0.97083 0.87882 1.23397 1.00618 0.98778 0.96420 1.21943 0.98965 0.91797 0.84526 1.44431 1.81021 1.00754 1.06691 1.19014 1.39051 0.84991 0.92123 0.90521 1.24796 1.01935 0.97424 0.96435 1.69766 1.55313 1.20989 1.11013 0.86136 0.78259 0.81847 0.79131 1.21177 1.21539 1.21146 1.21505 0.97915 0.86294 0.93957 0.92294 0.89907 0.91380 0.87207 0.87409 0.84310 0.83863 0.83859 0.92056 0.91594 0.87262 0.96704 0.93589 0.95478 0.95803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 9.13 59.85 0.55 1.29 16 2 N -0.60 -8.27 2.88 -171.84 -0.50 -8.77 16 3 C 0.51 6.84 7.67 -10.99 -0.08 6.75 16 4 O -0.54 -9.39 15.40 5.55 0.09 -9.31 16 5 C -0.10 -0.88 4.38 -29.03 -0.13 -1.00 16 6 C -0.03 -0.26 4.37 -104.63 -0.46 -0.72 16 7 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 8 C -0.08 -0.71 9.83 -39.56 -0.39 -1.10 16 9 C -0.08 -0.79 6.33 -39.43 -0.25 -1.04 16 10 Cl -0.05 -0.54 28.62 -51.86 -1.48 -2.03 16 11 C 0.11 1.23 7.28 -39.39 -0.29 0.94 16 12 F -0.13 -1.50 16.84 2.25 0.04 -1.47 16 13 C -0.13 -1.29 9.68 -39.52 -0.38 -1.67 16 14 C 0.13 2.24 3.36 -66.10 -0.22 2.01 16 15 H 0.10 2.02 6.99 -51.93 -0.36 1.66 16 16 C -0.15 -2.81 6.61 -24.58 -0.16 -2.97 16 17 C 0.15 3.63 5.89 -2.53 -0.01 3.61 16 18 N -0.60 -15.11 3.39 -170.07 -0.58 -15.69 16 19 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -26.39 10.09 55.49 0.56 -25.83 16 23 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.13 2.68 6.88 -3.06 -0.02 2.66 16 28 H 0.06 0.57 7.89 -51.93 -0.41 0.16 16 29 H 0.08 0.97 6.08 -51.93 -0.32 0.65 16 30 H 0.07 0.46 6.44 -51.93 -0.33 0.12 16 31 H 0.11 0.66 8.05 -51.93 -0.42 0.24 16 32 H 0.11 0.65 7.34 -51.93 -0.38 0.27 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.13 6.09 -51.93 -0.32 0.81 16 38 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.03 0.53 6.94 -51.93 -0.36 0.17 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -32.39 361.40 -9.22 -41.61 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.29 Total: -1.47 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.48 Total: 0.84 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.51 Total: -50.28 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.39 -9.22 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033450096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.678 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds