Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 119.99594 * 2 1 4 4 O 1.21283 * 120.00089 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00335 * 0.02562 * 3 2 1 6 6 C 1.50705 * 109.47082 * 179.97438 * 5 3 2 7 7 C 1.38267 * 119.97109 * 90.00132 * 6 5 3 8 8 C 1.38215 * 120.05425 * 179.97438 * 7 6 5 9 9 C 1.38325 * 120.01823 * 359.97438 * 8 7 6 10 10 Cl 1.73598 * 120.02467 * 180.02562 * 9 8 7 11 11 C 1.38549 * 119.94711 * 359.97438 * 9 8 7 12 12 F 1.35097 * 120.02659 * 179.97438 * 11 9 8 13 13 C 1.38190 * 119.97696 * 269.72281 * 6 5 3 14 14 C 1.46501 * 120.00098 * 179.97438 * 2 1 3 15 15 H 1.08995 * 110.63969 * 181.69118 * 14 2 1 16 16 C 1.55151 * 110.71907 * 305.02571 * 14 2 1 17 17 C 1.54913 * 101.58010 * 153.86596 * 16 14 2 18 18 N 1.47425 * 104.83143 * 322.98863 * 17 16 14 19 19 C 1.36936 * 125.64802 * 204.16423 * 18 17 16 20 20 H 1.07995 * 119.99752 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99911 * 359.95952 * 19 18 17 22 22 N 1.31619 * 120.00201 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47491 * 59.99723 * 23 21 19 25 25 H 1.48505 * 109.47479 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47212 * 299.99854 * 23 21 19 27 27 C 1.47025 * 108.70153 * 24.12835 * 18 17 16 28 28 H 1.09001 * 109.47060 * 90.00388 * 1 2 3 29 29 H 1.09004 * 109.47073 * 209.99877 * 1 2 3 30 30 H 1.09000 * 109.47212 * 329.99960 * 1 2 3 31 31 H 1.09000 * 109.47188 * 299.99755 * 5 3 2 32 32 H 1.08996 * 109.47042 * 59.99980 * 5 3 2 33 33 H 1.07995 * 119.97035 * 359.97206 * 7 6 5 34 34 H 1.08001 * 119.99168 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.00633 * 0.02562 * 13 6 5 36 36 H 1.09001 * 111.00847 * 271.93818 * 16 14 2 37 37 H 1.09000 * 111.00929 * 35.79336 * 16 14 2 38 38 H 1.09006 * 110.36471 * 204.15075 * 17 16 14 39 39 H 1.08997 * 110.46197 * 81.87719 * 17 16 14 40 40 H 0.96997 * 120.00289 * 180.02562 * 22 21 19 41 41 H 1.08995 * 109.88227 * 239.52141 * 27 18 17 42 42 H 1.08999 * 109.88068 * 118.35458 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 6 2.8135 4.1434 -1.1964 8 6 3.7112 5.1942 -1.1980 9 6 4.1612 5.7217 -0.0010 10 17 5.2883 7.0421 -0.0028 11 6 3.7109 5.1961 1.1992 12 9 4.1498 5.7096 2.3691 13 6 2.8089 4.1458 1.1984 14 6 2.1976 -1.2687 0.0006 15 1 3.2726 -1.0916 0.0306 16 6 1.7507 -2.1600 1.1893 17 6 2.0639 -3.5780 0.6498 18 7 1.7325 -3.5173 -0.7855 19 6 1.3992 -4.5865 -1.5735 20 1 1.1719 -4.4369 -2.6186 21 6 1.3538 -5.8625 -1.0290 22 7 1.6306 -6.0448 0.2448 23 14 0.8998 -7.3211 -2.1041 24 1 1.8772 -7.4400 -3.2158 25 1 0.9224 -8.5626 -1.2895 26 1 -0.4619 -7.1203 -2.6616 27 6 1.8183 -2.1186 -1.2304 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 0.7583 2.5303 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 2.4623 3.7323 -2.1313 34 1 4.0614 5.6037 -2.1340 35 1 2.4547 3.7374 2.1333 36 1 2.3373 -1.9434 2.0822 37 1 0.6850 -2.0435 1.3861 38 1 1.4431 -4.3204 1.1514 39 1 3.1195 -3.8129 0.7858 40 1 1.5992 -6.9365 0.6252 41 1 0.8542 -1.7944 -1.6220 42 1 2.5850 -2.0205 -1.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033450096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -44.077691 kcal Electronic energy + Delta-G solvation = -26591.345197 eV Core-core repulsion = 22512.054256 eV Total energy + Delta-G solvation = -4079.290940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.03755 -41.36710 -40.09296 -38.84904 -37.61723 -36.21757 -34.24911 -33.51103 -31.74311 -31.13828 -29.57698 -28.38392 -27.58808 -26.28526 -24.07770 -23.37085 -22.13151 -21.70321 -19.96908 -18.95365 -18.54531 -18.33319 -17.81731 -17.43999 -17.13503 -16.80731 -16.62232 -16.36429 -15.93676 -15.46525 -15.04785 -14.75417 -14.52647 -14.45807 -14.38348 -13.94776 -13.93882 -13.64649 -13.42588 -13.34339 -13.00952 -12.97286 -12.75450 -12.66686 -12.49883 -12.37984 -12.30461 -12.10600 -12.06369 -11.96703 -11.81312 -11.36856 -10.87483 -10.73800 -10.00415 -9.64791 -9.59482 -8.91641 -7.77594 -5.23387 -0.13616 0.07409 0.94586 1.47976 1.51121 1.57469 1.64806 1.93886 2.44364 2.52066 3.01028 3.32582 3.48603 3.61878 3.65670 3.76849 3.91977 4.01604 4.05602 4.14991 4.25836 4.32949 4.40675 4.50513 4.58317 4.65776 4.70488 4.74613 4.83195 4.89126 4.93442 4.99610 5.02429 5.09251 5.13150 5.35858 5.45480 5.56284 5.60651 5.67227 5.77745 6.28825 6.48901 7.09096 7.20028 7.75709 8.39177 9.23888 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.002023 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.352129 B =13836.773913 C =13988.683541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.600 5.600 3 C 0.510 3.490 4 O -0.584 6.584 5 C -0.093 4.093 6 C -0.037 4.037 7 C -0.102 4.102 8 C -0.082 4.082 9 C -0.088 4.088 10 Cl -0.058 7.058 11 C 0.087 3.913 12 F -0.139 7.139 13 C -0.134 4.134 14 C 0.142 3.858 15 H 0.080 0.920 16 C -0.133 4.133 17 C 0.155 3.845 18 N -0.623 5.623 19 C -0.240 4.240 20 H 0.082 0.918 21 C -0.066 4.066 22 N -0.949 5.949 23 Si 0.982 3.018 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.131 3.869 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.081 0.919 39 H -0.018 1.018 40 H 0.248 0.752 41 H 0.045 0.955 42 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 25.752 -0.232 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.331 5.331 3 C 0.300 3.700 4 O -0.464 6.464 5 C -0.132 4.132 6 C -0.037 4.037 7 C -0.120 4.120 8 C -0.101 4.101 9 C -0.116 4.116 10 Cl -0.029 7.029 11 C 0.067 3.933 12 F -0.118 7.118 13 C -0.153 4.153 14 C 0.037 3.963 15 H 0.098 0.902 16 C -0.172 4.172 17 C 0.029 3.971 18 N -0.349 5.349 19 C -0.368 4.368 20 H 0.099 0.901 21 C -0.258 4.258 22 N -0.599 5.599 23 Si 0.810 3.190 24 H -0.208 1.208 25 H -0.220 1.220 26 H -0.198 1.198 27 C 0.005 3.995 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.000 1.000 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -3.640 25.686 -0.181 25.944 hybrid contribution 0.663 -1.028 -0.089 1.227 sum -2.977 24.658 -0.270 24.839 Atomic orbital electron populations 1.22138 0.77049 1.04959 1.03466 1.47877 1.08445 1.04448 1.72375 1.21196 0.87689 0.85973 0.75121 1.90725 1.16199 1.87873 1.51648 1.20852 0.96906 0.86263 1.09139 1.19485 0.96745 0.95153 0.92364 1.21412 0.96347 0.95138 0.99138 1.21226 0.96246 0.95940 0.96651 1.21202 0.99612 0.96128 0.94642 1.98377 1.59881 1.45760 1.98915 1.17590 0.98769 0.96685 0.80263 1.91503 1.88254 1.86090 1.45918 1.21175 0.97760 0.95545 1.00795 1.21723 0.96491 0.82979 0.95121 0.90152 1.23177 1.02015 0.95155 0.96874 1.21717 0.96303 0.94579 0.84454 1.44708 1.80840 1.02183 1.07186 1.19395 1.38650 0.86059 0.92727 0.90051 1.25645 1.02411 1.00042 0.97738 1.70019 1.56351 1.20987 1.12494 0.85105 0.78383 0.78183 0.77355 1.20789 1.22019 1.19813 1.21601 0.98249 0.84700 0.94960 0.91183 0.91351 0.86817 0.83715 0.84171 0.82057 0.81856 0.82793 0.90728 0.89703 0.90125 1.00023 0.94224 0.93683 0.97136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 9.13 127.77 1.17 2.23 16 2 N -0.60 -14.82 2.88 -815.96 -2.35 -17.17 16 3 C 0.51 12.12 7.67 87.66 0.67 12.79 16 4 O -0.58 -19.79 15.40 -3.04 -0.05 -19.84 16 5 C -0.09 -1.12 4.38 29.10 0.13 -0.99 16 6 C -0.04 -0.59 4.37 -19.87 -0.09 -0.68 16 7 C -0.10 -1.50 9.70 22.27 0.22 -1.28 16 8 C -0.08 -1.29 9.83 22.28 0.22 -1.07 16 9 C -0.09 -1.75 6.33 22.36 0.14 -1.60 16 10 Cl -0.06 -1.12 28.62 -2.72 -0.08 -1.20 16 11 C 0.09 1.86 7.28 22.39 0.16 2.02 16 12 F -0.14 -3.28 16.84 44.97 0.76 -2.52 16 13 C -0.13 -2.46 9.68 22.31 0.22 -2.24 16 14 C 0.14 4.93 3.36 46.18 0.16 5.09 16 15 H 0.08 3.19 6.99 -2.39 -0.02 3.17 16 16 C -0.13 -4.80 6.61 31.99 0.21 -4.59 16 17 C 0.15 7.58 5.89 86.86 0.51 8.09 16 18 N -0.62 -31.68 3.39 -691.99 -2.35 -34.03 16 19 C -0.24 -13.21 10.27 84.03 0.86 -12.35 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 22 N -0.95 -55.79 10.09 21.65 0.22 -55.58 16 23 Si 0.98 44.81 29.55 68.60 2.03 46.84 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 C 0.13 5.35 6.88 86.73 0.60 5.94 16 28 H 0.07 1.02 7.89 -2.39 -0.02 1.00 16 29 H 0.07 1.36 6.08 -2.38 -0.01 1.34 16 30 H 0.11 0.83 6.44 -2.39 -0.02 0.82 16 31 H 0.15 0.82 8.05 -2.39 -0.02 0.80 16 32 H 0.14 0.85 7.34 -2.39 -0.02 0.83 16 33 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.08 2.76 6.09 -2.39 -0.01 2.74 16 38 H 0.08 4.43 5.87 -2.38 -0.01 4.42 16 39 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.05 1.68 6.94 -2.39 -0.02 1.67 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -74.00 361.40 4.87 -69.13 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.05 Total: 6.23 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 5.64 Total: 8.14 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -4.48 Total: -106.78 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.76 Total: -2.52 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -74.00 4.87 -69.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033450096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.053 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds