Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34780 * 120.00322 * 2 1 4 4 O 1.21279 * 120.00108 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99520 * 0.02562 * 3 2 1 6 6 C 1.50700 * 109.46625 * 179.97438 * 5 3 2 7 7 C 1.38247 * 120.00336 * 100.00162 * 6 5 3 8 8 C 1.38216 * 120.04677 * 180.02562 * 7 6 5 9 9 C 1.38260 * 120.06563 * 359.97438 * 8 7 6 10 10 C 1.38284 * 120.00852 * 0.02562 * 9 8 7 11 11 Cl 1.73604 * 120.02072 * 179.97438 * 10 9 8 12 12 C 1.38399 * 120.00769 * 279.72514 * 6 5 3 13 13 F 1.35100 * 120.03354 * 359.97438 * 12 6 5 14 14 C 1.46503 * 119.99728 * 180.02562 * 2 1 3 15 15 H 1.08997 * 110.63956 * 178.31431 * 14 2 1 16 16 C 1.55158 * 110.87358 * 55.06300 * 14 2 1 17 17 C 1.55122 * 101.48762 * 205.89605 * 16 14 2 18 18 N 1.47431 * 104.72104 * 37.29897 * 17 16 14 19 19 C 1.36933 * 125.64811 * 155.81923 * 18 17 16 20 20 H 1.08005 * 119.99933 * 199.28695 * 19 18 17 21 21 C 1.38808 * 120.00365 * 19.28278 * 19 18 17 22 22 N 1.31627 * 119.99820 * 28.57549 * 21 19 18 23 23 Si 1.86799 * 120.00377 * 208.29906 * 21 19 18 24 24 H 1.48497 * 109.47095 * 180.27771 * 23 21 19 25 25 H 1.48503 * 109.47115 * 300.27695 * 23 21 19 26 26 H 1.48496 * 109.47139 * 60.27388 * 23 21 19 27 27 C 1.47021 * 108.70053 * 335.54690 * 18 17 16 28 28 H 1.08994 * 109.47073 * 269.99952 * 1 2 3 29 29 H 1.09000 * 109.46614 * 30.00079 * 1 2 3 30 30 H 1.08993 * 109.47019 * 149.99910 * 1 2 3 31 31 H 1.08997 * 109.47053 * 299.99626 * 5 3 2 32 32 H 1.09004 * 109.47164 * 60.00102 * 5 3 2 33 33 H 1.07993 * 119.97343 * 359.97438 * 7 6 5 34 34 H 1.07996 * 119.97035 * 179.97438 * 8 7 6 35 35 H 1.07994 * 119.99654 * 180.02562 * 9 8 7 36 36 H 1.09003 * 111.00655 * 324.14134 * 16 14 2 37 37 H 1.09001 * 111.00076 * 87.95102 * 16 14 2 38 38 H 1.09002 * 110.50005 * 278.45688 * 17 16 14 39 39 H 1.08999 * 110.34198 * 156.05923 * 17 16 14 40 40 H 0.96997 * 119.99651 * 5.39997 * 22 21 19 41 41 H 1.09007 * 109.87700 * 120.70641 * 27 18 17 42 42 H 1.08996 * 109.88710 * 241.87086 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3648 3.6176 0.0011 7 6 2.6561 4.2787 -1.1776 8 6 3.5546 5.3290 -1.1783 9 6 4.1632 5.7206 -0.0002 10 6 3.8737 5.0611 1.1802 11 17 4.6382 5.5522 2.6595 12 6 2.9685 4.0116 1.1825 13 9 2.6800 3.3702 2.3360 14 6 2.1975 -1.2688 -0.0006 15 1 3.2726 -1.0918 -0.0305 16 6 1.7549 -2.1621 -1.1894 17 6 2.0759 -3.5795 -0.6471 18 7 1.7364 -3.5179 0.7863 19 6 1.4058 -4.5875 1.5748 20 1 0.8803 -4.4304 2.5053 21 6 1.7458 -5.8736 1.1784 22 7 2.8041 -6.0706 0.4210 23 14 0.7059 -7.3255 1.7260 24 1 1.2803 -8.5804 1.1779 25 1 0.6930 -7.3936 3.2094 26 1 -0.6822 -7.1567 1.2262 27 6 1.8182 -2.1188 1.2304 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 0.7585 2.5302 -0.8892 32 1 0.7591 2.5298 0.8909 33 1 2.1818 3.9737 -2.0987 34 1 3.7815 5.8443 -2.0999 35 1 4.8647 6.5417 -0.0020 36 1 0.6892 -2.0482 -1.3882 37 1 2.3420 -1.9442 -2.0816 38 1 3.1339 -3.8074 -0.7769 39 1 1.4616 -4.3260 -1.1506 40 1 3.3905 -5.3288 0.2046 41 1 0.8525 -1.7966 1.6201 42 1 2.5832 -2.0182 2.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033451701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -30.071280 kcal Electronic energy + Delta-G solvation = -27096.003307 eV Core-core repulsion = 23017.319730 eV Total energy + Delta-G solvation = -4078.683577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.15611 -40.31148 -39.24237 -37.54651 -36.82379 -34.97445 -33.30499 -32.20537 -30.75979 -29.30771 -28.50825 -27.45559 -26.41448 -24.27237 -23.18994 -22.65000 -20.60602 -20.31806 -18.87549 -17.97546 -17.53392 -17.38689 -17.09778 -16.52203 -16.06958 -15.69050 -15.35939 -14.85719 -14.44832 -14.26396 -13.81699 -13.67971 -13.64281 -13.36067 -13.27366 -13.12536 -12.99728 -12.67874 -12.39205 -12.25084 -11.97202 -11.79465 -11.73541 -11.58812 -11.21423 -11.07047 -10.76362 -10.70866 -10.55514 -10.11688 -10.02228 -9.84044 -9.54571 -9.16300 -8.98869 -8.50296 -8.38637 -6.94107 -6.11384 -3.17365 0.63404 0.70214 1.70126 2.61468 2.88928 3.21096 3.49851 3.52877 3.71393 3.78876 4.09018 4.37187 4.51623 4.59435 4.64580 4.71187 4.86717 5.02925 5.11048 5.19282 5.24582 5.29337 5.35593 5.47001 5.49843 5.57472 5.60684 5.62009 5.75145 5.78934 5.91015 5.97452 6.10829 6.31613 6.32447 6.43577 6.61927 6.83445 6.90385 7.00721 7.46628 7.80051 8.18992 8.48121 9.00789 9.80103 10.35563 11.20980 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.002395 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.160720 B =11689.372893 C =12198.946198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C 0.515 3.485 4 O -0.534 6.534 5 C -0.101 4.101 6 C -0.087 4.087 7 C -0.076 4.076 8 C -0.118 4.118 9 C -0.085 4.085 10 C -0.074 4.074 11 Cl -0.052 7.052 12 C 0.129 3.871 13 F -0.122 7.122 14 C 0.127 3.873 15 H 0.104 0.896 16 C -0.144 4.144 17 C 0.146 3.854 18 N -0.600 5.600 19 C -0.338 4.338 20 H 0.064 0.936 21 C -0.024 4.024 22 N -0.913 5.913 23 Si 1.066 2.934 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.128 3.872 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.053 0.947 40 H 0.269 0.731 41 H 0.030 0.970 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 26.320 -4.987 27.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.333 5.333 3 C 0.302 3.698 4 O -0.411 6.411 5 C -0.141 4.141 6 C -0.089 4.089 7 C -0.094 4.094 8 C -0.136 4.136 9 C -0.104 4.104 10 C -0.101 4.101 11 Cl -0.023 7.023 12 C 0.108 3.892 13 F -0.100 7.100 14 C 0.024 3.976 15 H 0.122 0.878 16 C -0.183 4.183 17 C 0.020 3.980 18 N -0.327 5.327 19 C -0.466 4.466 20 H 0.081 0.919 21 C -0.227 4.227 22 N -0.554 5.554 23 Si 0.895 3.105 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.002 3.998 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.209 24.595 -4.864 25.276 hybrid contribution 0.194 1.560 0.679 1.712 sum -3.015 26.155 -4.186 26.659 Atomic orbital electron populations 1.21838 0.79624 1.03247 1.02313 1.47812 1.07025 1.05784 1.72646 1.20309 0.88039 0.84871 0.76603 1.90724 1.13740 1.87144 1.49501 1.20665 0.97335 0.90160 1.05949 1.19354 0.99658 0.97854 0.92019 1.21026 0.96920 0.94596 0.96881 1.21121 0.96927 0.97587 0.97976 1.20975 0.99661 0.99543 0.90196 1.20965 0.99996 0.99179 0.90004 1.98391 1.80077 1.90586 1.33213 1.17194 0.97045 0.92366 0.82554 1.91552 1.91748 1.80125 1.46592 1.22209 0.97297 0.81418 0.96681 0.87773 1.23221 1.01030 0.97299 0.96750 1.21554 0.98287 0.92695 0.85493 1.44511 1.82022 1.01623 1.04570 1.19705 1.34831 0.85890 1.06181 0.91857 1.25805 0.98118 0.98542 1.00207 1.70785 1.10480 1.34461 1.39646 0.83512 0.75432 0.76044 0.75481 1.21061 1.21975 1.22085 1.21570 0.98122 0.86271 0.93863 0.92234 0.91314 0.90025 0.87052 0.87375 0.84360 0.84246 0.84015 0.91166 0.91598 0.95315 0.92869 0.91978 0.95245 0.95636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 9.13 59.85 0.55 1.34 16 2 N -0.60 -8.77 2.89 -171.84 -0.50 -9.27 16 3 C 0.51 7.51 7.66 -10.98 -0.08 7.43 16 4 O -0.53 -10.00 15.33 5.56 0.09 -9.92 16 5 C -0.10 -1.00 4.11 -29.03 -0.12 -1.12 16 6 C -0.09 -0.94 4.43 -104.56 -0.46 -1.40 16 7 C -0.08 -0.63 9.67 -39.59 -0.38 -1.01 16 8 C -0.12 -0.85 10.04 -39.58 -0.40 -1.25 16 9 C -0.09 -0.71 9.83 -39.56 -0.39 -1.10 16 10 C -0.07 -0.82 6.33 -39.43 -0.25 -1.07 16 11 Cl -0.05 -0.56 28.62 -51.86 -1.48 -2.05 16 12 C 0.13 1.60 7.11 -39.39 -0.28 1.32 16 13 F -0.12 -1.74 16.23 2.25 0.04 -1.70 16 14 C 0.13 2.33 3.35 -66.09 -0.22 2.11 16 15 H 0.10 2.11 6.99 -51.93 -0.36 1.75 16 16 C -0.14 -2.57 6.63 -24.47 -0.16 -2.73 16 17 C 0.15 3.38 5.39 -2.41 -0.01 3.36 16 18 N -0.60 -15.37 3.26 -169.93 -0.55 -15.93 16 19 C -0.34 -9.65 10.00 -15.06 -0.15 -9.80 16 20 H 0.06 1.81 7.97 -52.48 -0.42 1.39 16 21 C -0.02 -0.70 5.09 -17.43 -0.09 -0.79 16 22 N -0.91 -27.84 13.02 55.49 0.72 -27.12 16 23 Si 1.07 25.39 30.00 -169.99 -5.10 20.29 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.13 2.79 6.88 -3.07 -0.02 2.77 16 28 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 29 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 30 H 0.08 0.95 6.09 -51.93 -0.32 0.63 16 31 H 0.11 0.72 7.26 -51.93 -0.38 0.34 16 32 H 0.11 0.95 7.90 -51.93 -0.41 0.54 16 33 H 0.14 0.79 8.04 -52.49 -0.42 0.37 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.07 1.14 6.11 -51.93 -0.32 0.83 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.03 0.72 6.81 -51.93 -0.35 0.37 16 39 H 0.05 1.32 8.07 -51.93 -0.42 0.90 16 40 H 0.27 8.26 6.18 -40.82 -0.25 8.01 16 41 H 0.03 0.62 6.94 -51.93 -0.36 0.26 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -34.99 361.41 -9.06 -44.05 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.24 Total: -1.87 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.48 Total: -1.94 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.33 Total: -52.31 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.99 -9.06 -44.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033451701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.983 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds