Wall clock time and date at job start Sat Apr 11 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34780 * 120.00322 * 2 1 4 4 O 1.21279 * 120.00108 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99520 * 0.02562 * 3 2 1 6 6 C 1.50700 * 109.46625 * 179.97438 * 5 3 2 7 7 C 1.38247 * 120.00336 * 100.00162 * 6 5 3 8 8 C 1.38216 * 120.04677 * 180.02562 * 7 6 5 9 9 C 1.38260 * 120.06563 * 359.97438 * 8 7 6 10 10 C 1.38284 * 120.00852 * 0.02562 * 9 8 7 11 11 Cl 1.73604 * 120.02072 * 179.97438 * 10 9 8 12 12 C 1.38399 * 120.00769 * 279.72514 * 6 5 3 13 13 F 1.35100 * 120.03354 * 359.97438 * 12 6 5 14 14 C 1.46503 * 119.99728 * 180.02562 * 2 1 3 15 15 H 1.08997 * 110.63956 * 178.31431 * 14 2 1 16 16 C 1.55158 * 110.87358 * 55.06300 * 14 2 1 17 17 C 1.55122 * 101.48762 * 205.89605 * 16 14 2 18 18 N 1.47431 * 104.72104 * 37.29897 * 17 16 14 19 19 C 1.36933 * 125.64811 * 155.81923 * 18 17 16 20 20 H 1.08005 * 119.99933 * 199.28695 * 19 18 17 21 21 C 1.38808 * 120.00365 * 19.28278 * 19 18 17 22 22 N 1.31627 * 119.99820 * 28.57549 * 21 19 18 23 23 Si 1.86799 * 120.00377 * 208.29906 * 21 19 18 24 24 H 1.48497 * 109.47095 * 180.27771 * 23 21 19 25 25 H 1.48503 * 109.47115 * 300.27695 * 23 21 19 26 26 H 1.48496 * 109.47139 * 60.27388 * 23 21 19 27 27 C 1.47021 * 108.70053 * 335.54690 * 18 17 16 28 28 H 1.08994 * 109.47073 * 269.99952 * 1 2 3 29 29 H 1.09000 * 109.46614 * 30.00079 * 1 2 3 30 30 H 1.08993 * 109.47019 * 149.99910 * 1 2 3 31 31 H 1.08997 * 109.47053 * 299.99626 * 5 3 2 32 32 H 1.09004 * 109.47164 * 60.00102 * 5 3 2 33 33 H 1.07993 * 119.97343 * 359.97438 * 7 6 5 34 34 H 1.07996 * 119.97035 * 179.97438 * 8 7 6 35 35 H 1.07994 * 119.99654 * 180.02562 * 9 8 7 36 36 H 1.09003 * 111.00655 * 324.14134 * 16 14 2 37 37 H 1.09001 * 111.00076 * 87.95102 * 16 14 2 38 38 H 1.09002 * 110.50005 * 278.45688 * 17 16 14 39 39 H 1.08999 * 110.34198 * 156.05923 * 17 16 14 40 40 H 0.96997 * 119.99651 * 5.39997 * 22 21 19 41 41 H 1.09007 * 109.87700 * 120.70641 * 27 18 17 42 42 H 1.08996 * 109.88710 * 241.87086 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3648 3.6176 0.0011 7 6 2.6561 4.2787 -1.1776 8 6 3.5546 5.3290 -1.1783 9 6 4.1632 5.7206 -0.0002 10 6 3.8737 5.0611 1.1802 11 17 4.6382 5.5522 2.6595 12 6 2.9685 4.0116 1.1825 13 9 2.6800 3.3702 2.3360 14 6 2.1975 -1.2688 -0.0006 15 1 3.2726 -1.0918 -0.0305 16 6 1.7549 -2.1621 -1.1894 17 6 2.0759 -3.5795 -0.6471 18 7 1.7364 -3.5179 0.7863 19 6 1.4058 -4.5875 1.5748 20 1 0.8803 -4.4304 2.5053 21 6 1.7458 -5.8736 1.1784 22 7 2.8041 -6.0706 0.4210 23 14 0.7059 -7.3255 1.7260 24 1 1.2803 -8.5804 1.1779 25 1 0.6930 -7.3936 3.2094 26 1 -0.6822 -7.1567 1.2262 27 6 1.8182 -2.1188 1.2304 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 0.7585 2.5302 -0.8892 32 1 0.7591 2.5298 0.8909 33 1 2.1818 3.9737 -2.0987 34 1 3.7815 5.8443 -2.0999 35 1 4.8647 6.5417 -0.0020 36 1 0.6892 -2.0482 -1.3882 37 1 2.3420 -1.9442 -2.0816 38 1 3.1339 -3.8074 -0.7769 39 1 1.4616 -4.3260 -1.1506 40 1 3.3905 -5.3288 0.2046 41 1 0.8525 -1.7966 1.6201 42 1 2.5832 -2.0182 2.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033451701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:13 Heat of formation + Delta-G solvation = -51.206795 kcal Electronic energy + Delta-G solvation = -27096.919812 eV Core-core repulsion = 23017.319730 eV Total energy + Delta-G solvation = -4079.600081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.07627 -41.41468 -40.11090 -39.07897 -37.62899 -36.42597 -34.47168 -33.73690 -31.43448 -31.11309 -29.83390 -28.52054 -27.63604 -26.23186 -23.88979 -23.54468 -22.24627 -21.86930 -20.10546 -19.60907 -18.76006 -18.51081 -17.89280 -17.50695 -17.02843 -16.74841 -16.44632 -16.19218 -15.89864 -15.49652 -15.46508 -15.17141 -14.58514 -14.53995 -14.38945 -14.34093 -14.00520 -13.85910 -13.51870 -13.45408 -13.05316 -12.78961 -12.65842 -12.55243 -12.52354 -12.48871 -12.45653 -12.39452 -11.97286 -11.90121 -11.72378 -11.62049 -11.02155 -10.55967 -9.88384 -9.73302 -9.71214 -9.08258 -8.38234 -5.42015 -0.04663 -0.00295 0.94019 1.51961 1.57141 1.64899 1.83872 1.86247 2.44821 2.63075 3.06257 3.13777 3.35705 3.44391 3.58628 3.71756 3.78189 3.84183 3.99434 4.08628 4.14671 4.22060 4.27193 4.32551 4.41516 4.47997 4.62456 4.65999 4.73164 4.84943 4.88780 4.93053 4.94082 4.97654 4.99687 5.15794 5.19652 5.27896 5.45259 5.63646 5.70295 6.25483 6.35257 6.82548 7.07795 7.63924 8.21753 8.92585 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.002395 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.160720 B =11689.372893 C =12198.946198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.600 5.600 3 C 0.510 3.490 4 O -0.583 6.583 5 C -0.091 4.091 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.108 4.108 9 C -0.086 4.086 10 C -0.094 4.094 11 Cl -0.064 7.064 12 C 0.091 3.909 13 F -0.144 7.144 14 C 0.142 3.858 15 H 0.078 0.922 16 C -0.120 4.120 17 C 0.147 3.853 18 N -0.620 5.620 19 C -0.351 4.351 20 H 0.059 0.941 21 C -0.076 4.076 22 N -0.941 5.941 23 Si 1.120 2.880 24 H -0.291 1.291 25 H -0.276 1.276 26 H -0.274 1.274 27 C 0.129 3.871 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.120 0.880 33 H 0.171 0.829 34 H 0.178 0.822 35 H 0.164 0.836 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.001 0.999 39 H 0.032 0.968 40 H 0.253 0.747 41 H 0.044 0.956 42 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 28.413 -7.051 29.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.331 5.331 3 C 0.300 3.700 4 O -0.463 6.463 5 C -0.130 4.130 6 C -0.105 4.105 7 C -0.091 4.091 8 C -0.126 4.126 9 C -0.104 4.104 10 C -0.121 4.121 11 Cl -0.035 7.035 12 C 0.071 3.929 13 F -0.123 7.123 14 C 0.037 3.963 15 H 0.097 0.903 16 C -0.158 4.158 17 C 0.021 3.979 18 N -0.347 5.347 19 C -0.480 4.480 20 H 0.076 0.924 21 C -0.273 4.273 22 N -0.583 5.583 23 Si 0.944 3.056 24 H -0.217 1.217 25 H -0.202 1.202 26 H -0.200 1.200 27 C 0.003 3.997 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.095 0.905 31 H 0.175 0.825 32 H 0.138 0.862 33 H 0.189 0.811 34 H 0.195 0.805 35 H 0.182 0.818 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.019 0.981 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -5.557 26.742 -6.924 28.177 hybrid contribution 0.970 1.010 1.323 1.926 sum -4.587 27.752 -5.601 28.681 Atomic orbital electron populations 1.22151 0.76869 1.05410 1.03156 1.47844 1.08527 1.04282 1.72494 1.21201 0.87737 0.86075 0.74995 1.90706 1.16197 1.87865 1.51540 1.20736 0.97040 0.86635 1.08622 1.19610 1.00173 0.98512 0.92195 1.21496 0.96538 0.94068 0.97040 1.21619 0.95367 0.96845 0.98754 1.21365 0.99739 0.99636 0.89662 1.21246 1.00481 0.99828 0.90556 1.98376 1.80267 1.90635 1.34251 1.17669 0.98883 0.93596 0.82750 1.91481 1.92153 1.80765 1.47910 1.21682 0.96540 0.83084 0.94957 0.90333 1.23061 1.02968 0.92966 0.96849 1.21482 0.96161 0.95670 0.84568 1.44784 1.81801 1.02483 1.05634 1.19992 1.34282 0.87179 1.06501 0.92361 1.27325 0.98373 1.01545 1.00008 1.70914 1.11735 1.33820 1.41803 0.82805 0.74467 0.72357 0.76018 1.21670 1.20203 1.19983 1.21634 0.97806 0.85336 0.94966 0.92119 0.86502 0.90478 0.82481 0.86237 0.81108 0.80496 0.81835 0.88603 0.89397 0.98092 0.94941 0.93683 0.93802 0.98572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 9.13 127.77 1.17 2.35 16 2 N -0.60 -16.37 2.89 -815.96 -2.35 -18.72 16 3 C 0.51 14.03 7.66 87.66 0.67 14.70 16 4 O -0.58 -21.85 15.33 -3.03 -0.05 -21.90 16 5 C -0.09 -1.50 4.11 29.10 0.12 -1.38 16 6 C -0.10 -1.98 4.43 -19.82 -0.09 -2.07 16 7 C -0.07 -0.93 9.67 22.27 0.22 -0.71 16 8 C -0.11 -1.14 10.04 22.27 0.22 -0.92 16 9 C -0.09 -1.24 9.83 22.29 0.22 -1.02 16 10 C -0.09 -2.03 6.33 22.37 0.14 -1.89 16 11 Cl -0.06 -1.43 28.62 -2.72 -0.08 -1.51 16 12 C 0.09 2.24 7.11 22.39 0.16 2.40 16 13 F -0.14 -4.28 16.23 44.97 0.73 -3.55 16 14 C 0.14 5.21 3.35 46.18 0.15 5.36 16 15 H 0.08 3.30 6.99 -2.39 -0.02 3.29 16 16 C -0.12 -4.14 6.63 32.06 0.21 -3.92 16 17 C 0.15 7.01 5.39 86.93 0.47 7.48 16 18 N -0.62 -32.65 3.26 -691.55 -2.26 -34.91 16 19 C -0.35 -20.48 10.00 84.03 0.84 -19.64 16 20 H 0.06 3.38 7.97 -2.91 -0.02 3.36 16 21 C -0.08 -4.47 5.09 84.86 0.43 -4.04 16 22 N -0.94 -59.21 13.02 21.65 0.28 -58.93 16 23 Si 1.12 51.48 30.00 68.60 2.06 53.54 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 C 0.13 5.73 6.88 86.73 0.60 6.33 16 28 H 0.06 1.11 7.89 -2.39 -0.02 1.09 16 29 H 0.12 1.01 6.44 -2.39 -0.02 0.99 16 30 H 0.08 1.51 6.09 -2.39 -0.01 1.49 16 31 H 0.16 1.09 7.26 -2.39 -0.02 1.07 16 32 H 0.12 1.73 7.90 -2.39 -0.02 1.72 16 33 H 0.17 0.99 8.04 -2.91 -0.02 0.96 16 34 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 35 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.10 2.85 6.11 -2.39 -0.01 2.84 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.00 0.07 6.81 -2.39 -0.02 0.05 16 39 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 40 H 0.25 16.34 6.18 -92.71 -0.57 15.77 16 41 H 0.04 1.83 6.94 -2.38 -0.02 1.81 16 42 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: -1.00 -82.44 361.41 5.12 -77.32 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.25 Total: 5.63 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.53 Total: 3.03 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.33 Total: -112.56 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.73 Total: -3.55 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.06 Total: 53.54 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -82.44 5.12 -77.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033451701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.117 kcal (2) G-P(sol) polarization free energy of solvation -82.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds