Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 119.99594 * 2 1 4 4 O 1.21283 * 120.00089 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00335 * 0.02562 * 3 2 1 6 6 C 1.50705 * 109.47082 * 179.97438 * 5 3 2 7 7 C 1.38236 * 120.00453 * 99.99858 * 6 5 3 8 8 C 1.38222 * 120.05120 * 179.97438 * 7 6 5 9 9 C 1.38263 * 120.05924 * 0.02562 * 8 7 6 10 10 C 1.38284 * 120.01032 * 359.97438 * 9 8 7 11 11 Cl 1.73599 * 120.02209 * 179.97438 * 10 9 8 12 12 C 1.38402 * 120.00495 * 279.72518 * 6 5 3 13 13 F 1.35096 * 120.02972 * 359.97438 * 12 6 5 14 14 C 1.46501 * 120.00098 * 179.97438 * 2 1 3 15 15 H 1.08995 * 110.63969 * 181.69118 * 14 2 1 16 16 C 1.55151 * 110.71907 * 305.02571 * 14 2 1 17 17 C 1.54913 * 101.58010 * 153.86596 * 16 14 2 18 18 N 1.47425 * 104.83143 * 322.98863 * 17 16 14 19 19 C 1.36936 * 125.64802 * 204.16423 * 18 17 16 20 20 H 1.07995 * 119.99752 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99911 * 359.95952 * 19 18 17 22 22 N 1.31619 * 120.00201 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47491 * 59.99723 * 23 21 19 25 25 H 1.48505 * 109.47479 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47212 * 299.99854 * 23 21 19 27 27 C 1.47025 * 108.70153 * 24.12835 * 18 17 16 28 28 H 1.09001 * 109.47060 * 90.00388 * 1 2 3 29 29 H 1.09004 * 109.47073 * 209.99877 * 1 2 3 30 30 H 1.09000 * 109.47212 * 329.99960 * 1 2 3 31 31 H 1.09000 * 109.47188 * 299.99755 * 5 3 2 32 32 H 1.08996 * 109.47042 * 59.99980 * 5 3 2 33 33 H 1.07997 * 119.97830 * 359.97438 * 7 6 5 34 34 H 1.07995 * 119.97265 * 179.97438 * 8 7 6 35 35 H 1.07990 * 119.99489 * 179.97438 * 9 8 7 36 36 H 1.09001 * 111.00847 * 271.93818 * 16 14 2 37 37 H 1.09000 * 111.00929 * 35.79336 * 16 14 2 38 38 H 1.09006 * 110.36471 * 204.15075 * 17 16 14 39 39 H 1.08997 * 110.46197 * 81.87719 * 17 16 14 40 40 H 0.96997 * 120.00289 * 180.02562 * 22 21 19 41 41 H 1.08995 * 109.88227 * 239.52141 * 27 18 17 42 42 H 1.08999 * 109.88068 * 118.35458 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 6 2.6558 4.2788 -1.1775 8 6 3.5535 5.3299 -1.1781 9 6 4.1620 5.7215 0.0000 10 6 3.8725 5.0620 1.1805 11 17 4.6369 5.5531 2.6598 12 6 2.9683 4.0118 1.1826 13 9 2.6797 3.3702 2.3359 14 6 2.1976 -1.2687 0.0006 15 1 3.2726 -1.0916 0.0306 16 6 1.7507 -2.1600 1.1893 17 6 2.0639 -3.5780 0.6498 18 7 1.7325 -3.5173 -0.7855 19 6 1.3992 -4.5865 -1.5735 20 1 1.1719 -4.4369 -2.6186 21 6 1.3538 -5.8625 -1.0290 22 7 1.6306 -6.0448 0.2448 23 14 0.8998 -7.3211 -2.1041 24 1 1.8772 -7.4400 -3.2158 25 1 0.9224 -8.5626 -1.2895 26 1 -0.4619 -7.1203 -2.6616 27 6 1.8183 -2.1186 -1.2304 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 0.7583 2.5303 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 2.1817 3.9738 -2.0987 34 1 3.7804 5.8451 -2.0997 35 1 4.8635 6.5426 -0.0016 36 1 2.3373 -1.9434 2.0822 37 1 0.6850 -2.0435 1.3861 38 1 1.4431 -4.3204 1.1514 39 1 3.1195 -3.8129 0.7858 40 1 1.5992 -6.9365 0.6252 41 1 0.8542 -1.7944 -1.6220 42 1 2.5850 -2.0205 -1.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033451702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -24.211808 kcal Electronic energy + Delta-G solvation = -27050.415196 eV Core-core repulsion = 22971.985705 eV Total energy + Delta-G solvation = -4078.429491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.14048 -40.23570 -39.18089 -37.36678 -36.79609 -34.80944 -33.23786 -32.06683 -30.72955 -29.38059 -28.34980 -27.34809 -26.36584 -24.45070 -23.15525 -22.58377 -20.45694 -20.22926 -18.75818 -17.94832 -17.29471 -17.10455 -16.97895 -16.43579 -15.98641 -15.56025 -15.27959 -14.82682 -14.70036 -14.26402 -13.86413 -13.65409 -13.53262 -13.28869 -13.23119 -12.97086 -12.73294 -12.42582 -12.18551 -11.96072 -11.85829 -11.73969 -11.70166 -11.53183 -11.19665 -11.05740 -10.85006 -10.80795 -10.42807 -10.16039 -9.84628 -9.74554 -9.56982 -9.11642 -8.96112 -8.67502 -8.37383 -6.86887 -5.67320 -3.09907 0.66667 0.73311 1.71770 2.69251 2.95227 3.27616 3.39173 3.43544 3.44940 3.81401 4.13296 4.40882 4.47677 4.59556 4.68064 4.76058 4.92651 5.10623 5.15227 5.34133 5.37317 5.41621 5.51942 5.54191 5.58551 5.63941 5.72198 5.74271 5.79327 5.92316 5.95033 6.20736 6.34116 6.37298 6.55429 6.55999 6.67992 6.96264 7.47292 7.56388 7.59799 7.82239 8.26320 8.33463 9.19105 9.79765 10.44087 11.36317 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026462 B = 0.002300 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.869092 B =12168.439155 C =12578.735162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.599 5.599 3 C 0.514 3.486 4 O -0.536 6.536 5 C -0.102 4.102 6 C -0.086 4.086 7 C -0.076 4.076 8 C -0.118 4.118 9 C -0.086 4.086 10 C -0.074 4.074 11 Cl -0.053 7.053 12 C 0.128 3.872 13 F -0.123 7.123 14 C 0.126 3.874 15 H 0.103 0.897 16 C -0.153 4.153 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.131 3.869 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.015 0.985 40 H 0.253 0.747 41 H 0.027 0.973 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 25.725 0.526 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.332 5.332 3 C 0.301 3.699 4 O -0.413 6.413 5 C -0.142 4.142 6 C -0.088 4.088 7 C -0.094 4.094 8 C -0.136 4.136 9 C -0.104 4.104 10 C -0.102 4.102 11 Cl -0.024 7.024 12 C 0.108 3.892 13 F -0.101 7.101 14 C 0.023 3.977 15 H 0.121 0.879 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.746 3.254 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.212 1.212 27 C 0.004 3.996 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.657 25.486 0.728 25.504 hybrid contribution -0.201 -0.875 -0.221 0.924 sum -0.858 24.611 0.506 24.631 Atomic orbital electron populations 1.21840 0.79689 1.03406 1.02128 1.47835 1.07022 1.05878 1.72419 1.20282 0.88030 0.84876 0.76691 1.90718 1.13739 1.87169 1.49696 1.20673 0.97328 0.90243 1.05923 1.19363 0.99595 0.97816 0.91987 1.21044 0.96863 0.94519 0.96953 1.21128 0.96916 0.97574 0.97968 1.20969 0.99684 0.99571 0.90207 1.20953 1.00059 0.99203 0.89944 1.98387 1.80114 1.90606 1.33272 1.17180 0.97117 0.92385 0.82530 1.91541 1.91770 1.80153 1.46627 1.22263 0.97128 0.81239 0.97074 0.87917 1.23397 1.00640 0.98731 0.96454 1.21938 0.98939 0.91796 0.84503 1.44431 1.81008 1.00746 1.06698 1.19016 1.39028 0.85001 0.92117 0.90532 1.24794 1.01959 0.97409 0.96425 1.69771 1.55325 1.20966 1.11011 0.86137 0.78248 0.81870 0.79128 1.21191 1.21543 1.21160 1.21500 0.97889 0.86287 0.93944 0.92305 0.89879 0.91438 0.87056 0.87440 0.84308 0.84253 0.84049 0.92037 0.91596 0.87279 0.96716 0.93601 0.95487 0.95824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 9.13 59.85 0.55 1.37 16 2 N -0.60 -8.99 2.88 -171.84 -0.50 -9.49 16 3 C 0.51 7.64 7.66 -10.99 -0.08 7.56 16 4 O -0.54 -10.13 15.33 5.55 0.09 -10.05 16 5 C -0.10 -1.03 4.11 -29.03 -0.12 -1.15 16 6 C -0.09 -0.94 4.43 -104.56 -0.46 -1.40 16 7 C -0.08 -0.65 9.67 -39.59 -0.38 -1.03 16 8 C -0.12 -0.88 10.04 -39.58 -0.40 -1.27 16 9 C -0.09 -0.72 9.83 -39.56 -0.39 -1.11 16 10 C -0.07 -0.81 6.33 -39.43 -0.25 -1.06 16 11 Cl -0.05 -0.57 28.62 -51.86 -1.48 -2.05 16 12 C 0.13 1.59 7.11 -39.39 -0.28 1.31 16 13 F -0.12 -1.71 16.23 2.25 0.04 -1.67 16 14 C 0.13 2.36 3.36 -66.10 -0.22 2.13 16 15 H 0.10 2.11 6.99 -51.93 -0.36 1.75 16 16 C -0.15 -2.94 6.61 -24.58 -0.16 -3.10 16 17 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 18 N -0.60 -15.40 3.39 -170.07 -0.58 -15.98 16 19 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16 23 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.13 2.77 6.88 -3.06 -0.02 2.75 16 28 H 0.06 0.61 7.89 -51.93 -0.41 0.20 16 29 H 0.08 1.05 6.08 -51.93 -0.32 0.73 16 30 H 0.07 0.55 6.44 -51.93 -0.33 0.21 16 31 H 0.11 0.79 7.97 -51.93 -0.41 0.38 16 32 H 0.11 0.94 7.20 -51.93 -0.37 0.56 16 33 H 0.14 0.87 8.04 -52.49 -0.42 0.45 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.19 6.09 -51.93 -0.32 0.87 16 38 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.03 0.55 6.94 -51.93 -0.36 0.19 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -33.29 360.41 -9.23 -42.52 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.27 Total: -1.41 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.49 Total: 1.97 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.51 Total: -51.62 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.29 -9.23 -42.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033451702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.304 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds