Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 119.99594 * 2 1 4 4 O 1.21283 * 120.00089 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00335 * 0.02562 * 3 2 1 6 6 C 1.50705 * 109.47082 * 179.97438 * 5 3 2 7 7 C 1.38236 * 120.00453 * 99.99858 * 6 5 3 8 8 C 1.38222 * 120.05120 * 179.97438 * 7 6 5 9 9 C 1.38263 * 120.05924 * 0.02562 * 8 7 6 10 10 C 1.38284 * 120.01032 * 359.97438 * 9 8 7 11 11 Cl 1.73599 * 120.02209 * 179.97438 * 10 9 8 12 12 C 1.38402 * 120.00495 * 279.72518 * 6 5 3 13 13 F 1.35096 * 120.02972 * 359.97438 * 12 6 5 14 14 C 1.46501 * 120.00098 * 179.97438 * 2 1 3 15 15 H 1.08995 * 110.63969 * 181.69118 * 14 2 1 16 16 C 1.55151 * 110.71907 * 305.02571 * 14 2 1 17 17 C 1.54913 * 101.58010 * 153.86596 * 16 14 2 18 18 N 1.47425 * 104.83143 * 322.98863 * 17 16 14 19 19 C 1.36936 * 125.64802 * 204.16423 * 18 17 16 20 20 H 1.07995 * 119.99752 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99911 * 359.95952 * 19 18 17 22 22 N 1.31619 * 120.00201 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47491 * 59.99723 * 23 21 19 25 25 H 1.48505 * 109.47479 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47212 * 299.99854 * 23 21 19 27 27 C 1.47025 * 108.70153 * 24.12835 * 18 17 16 28 28 H 1.09001 * 109.47060 * 90.00388 * 1 2 3 29 29 H 1.09004 * 109.47073 * 209.99877 * 1 2 3 30 30 H 1.09000 * 109.47212 * 329.99960 * 1 2 3 31 31 H 1.09000 * 109.47188 * 299.99755 * 5 3 2 32 32 H 1.08996 * 109.47042 * 59.99980 * 5 3 2 33 33 H 1.07997 * 119.97830 * 359.97438 * 7 6 5 34 34 H 1.07995 * 119.97265 * 179.97438 * 8 7 6 35 35 H 1.07990 * 119.99489 * 179.97438 * 9 8 7 36 36 H 1.09001 * 111.00847 * 271.93818 * 16 14 2 37 37 H 1.09000 * 111.00929 * 35.79336 * 16 14 2 38 38 H 1.09006 * 110.36471 * 204.15075 * 17 16 14 39 39 H 1.08997 * 110.46197 * 81.87719 * 17 16 14 40 40 H 0.96997 * 120.00289 * 180.02562 * 22 21 19 41 41 H 1.08995 * 109.88227 * 239.52141 * 27 18 17 42 42 H 1.08999 * 109.88068 * 118.35458 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 6 2.6558 4.2788 -1.1775 8 6 3.5535 5.3299 -1.1781 9 6 4.1620 5.7215 0.0000 10 6 3.8725 5.0620 1.1805 11 17 4.6369 5.5531 2.6598 12 6 2.9683 4.0118 1.1826 13 9 2.6797 3.3702 2.3359 14 6 2.1976 -1.2687 0.0006 15 1 3.2726 -1.0916 0.0306 16 6 1.7507 -2.1600 1.1893 17 6 2.0639 -3.5780 0.6498 18 7 1.7325 -3.5173 -0.7855 19 6 1.3992 -4.5865 -1.5735 20 1 1.1719 -4.4369 -2.6186 21 6 1.3538 -5.8625 -1.0290 22 7 1.6306 -6.0448 0.2448 23 14 0.8998 -7.3211 -2.1041 24 1 1.8772 -7.4400 -3.2158 25 1 0.9224 -8.5626 -1.2895 26 1 -0.4619 -7.1203 -2.6616 27 6 1.8183 -2.1186 -1.2304 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 0.7583 2.5303 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 2.1817 3.9738 -2.0987 34 1 3.7804 5.8451 -2.0997 35 1 4.8635 6.5426 -0.0016 36 1 2.3373 -1.9434 2.0822 37 1 0.6850 -2.0435 1.3861 38 1 1.4431 -4.3204 1.1514 39 1 3.1195 -3.8129 0.7858 40 1 1.5992 -6.9365 0.6252 41 1 0.8542 -1.7944 -1.6220 42 1 2.5850 -2.0205 -1.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033451702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -43.375970 kcal Electronic energy + Delta-G solvation = -27051.246216 eV Core-core repulsion = 22971.985705 eV Total energy + Delta-G solvation = -4079.260511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.03998 -41.34073 -40.05261 -38.90356 -37.59988 -36.26078 -34.33584 -33.66497 -31.41347 -31.17768 -29.65435 -28.47785 -27.63970 -26.31298 -23.86264 -23.47835 -22.15313 -21.74883 -20.01939 -18.97079 -18.72691 -18.44529 -17.86541 -17.37147 -17.01947 -16.74983 -16.52244 -16.36400 -15.91792 -15.46396 -15.35861 -14.53923 -14.52008 -14.45129 -14.34767 -14.04283 -13.97374 -13.72507 -13.47341 -13.32164 -13.09196 -13.00457 -12.69877 -12.66125 -12.48562 -12.40635 -12.35555 -12.15699 -12.07074 -11.94201 -11.82838 -11.40052 -10.95388 -10.75179 -9.85688 -9.70095 -9.64293 -8.93191 -7.78347 -5.24487 -0.02513 0.02242 0.96173 1.47405 1.50877 1.57220 1.58403 1.92110 2.46447 2.51559 3.08369 3.31871 3.38987 3.57210 3.72923 3.80665 3.89102 3.97931 4.01925 4.17246 4.22071 4.27154 4.30947 4.49177 4.54758 4.59939 4.67683 4.73392 4.85250 4.90869 4.94799 4.96563 5.04643 5.08520 5.17722 5.30354 5.44120 5.52942 5.57064 5.72032 5.75544 6.26988 6.42296 7.07676 7.13458 7.74164 8.38118 9.23378 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026462 B = 0.002300 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.869092 B =12168.439155 C =12578.735162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.600 5.600 3 C 0.510 3.490 4 O -0.584 6.584 5 C -0.092 4.092 6 C -0.103 4.103 7 C -0.076 4.076 8 C -0.109 4.109 9 C -0.086 4.086 10 C -0.093 4.093 11 Cl -0.062 7.062 12 C 0.094 3.906 13 F -0.142 7.142 14 C 0.141 3.859 15 H 0.079 0.921 16 C -0.134 4.134 17 C 0.157 3.843 18 N -0.622 5.622 19 C -0.241 4.241 20 H 0.083 0.917 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.983 3.017 24 H -0.281 1.281 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.133 3.867 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.082 0.918 39 H -0.018 1.018 40 H 0.248 0.752 41 H 0.046 0.954 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 27.892 -1.433 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.331 5.331 3 C 0.300 3.700 4 O -0.464 6.464 5 C -0.131 4.131 6 C -0.104 4.104 7 C -0.094 4.094 8 C -0.127 4.127 9 C -0.104 4.104 10 C -0.120 4.120 11 Cl -0.034 7.034 12 C 0.074 3.926 13 F -0.120 7.120 14 C 0.036 3.964 15 H 0.097 0.903 16 C -0.174 4.174 17 C 0.032 3.968 18 N -0.348 5.348 19 C -0.369 4.369 20 H 0.101 0.899 21 C -0.258 4.258 22 N -0.599 5.599 23 Si 0.811 3.189 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.198 1.198 27 C 0.007 3.993 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.169 0.831 32 H 0.142 0.858 33 H 0.185 0.815 34 H 0.193 0.807 35 H 0.182 0.818 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.000 1.000 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -2.312 27.697 -1.243 27.821 hybrid contribution 0.356 -1.475 0.330 1.553 sum -1.955 26.222 -0.913 26.310 Atomic orbital electron populations 1.22124 0.77066 1.04757 1.03588 1.47860 1.08458 1.04464 1.72344 1.21153 0.87735 0.86036 0.75099 1.90699 1.16120 1.87873 1.51674 1.20732 0.97054 0.86782 1.08529 1.19595 1.00156 0.98450 0.92214 1.21478 0.96647 0.94197 0.97088 1.21599 0.95426 0.96837 0.98804 1.21353 0.99721 0.99672 0.89661 1.21224 1.00481 0.99770 0.90538 1.98375 1.80247 1.90630 1.34105 1.17600 0.98764 0.93508 0.82695 1.91479 1.92122 1.80707 1.47730 1.21742 0.96408 0.82863 0.95351 0.90277 1.23186 1.01931 0.95414 0.96830 1.21695 0.96322 0.94297 0.84518 1.44700 1.80866 1.02158 1.07116 1.19410 1.38748 0.86018 0.92750 0.89946 1.25664 1.02334 1.00078 0.97744 1.70023 1.56317 1.21018 1.12559 0.85084 0.78394 0.78085 0.77330 1.20703 1.21999 1.19790 1.21575 0.98305 0.84671 0.94749 0.90759 0.91180 0.87468 0.83145 0.85800 0.81525 0.80680 0.81821 0.91027 0.89779 0.90057 0.99978 0.94203 0.93617 0.96971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 9.13 127.77 1.17 2.44 16 2 N -0.60 -16.86 2.88 -815.96 -2.35 -19.22 16 3 C 0.51 14.29 7.66 87.66 0.67 14.96 16 4 O -0.58 -21.99 15.33 -3.04 -0.05 -22.03 16 5 C -0.09 -1.57 4.11 29.10 0.12 -1.45 16 6 C -0.10 -2.01 4.43 -19.82 -0.09 -2.10 16 7 C -0.08 -1.05 9.67 22.27 0.22 -0.83 16 8 C -0.11 -1.23 10.04 22.27 0.22 -1.01 16 9 C -0.09 -1.25 9.83 22.29 0.22 -1.03 16 10 C -0.09 -1.97 6.33 22.37 0.14 -1.83 16 11 Cl -0.06 -1.34 28.62 -2.72 -0.08 -1.42 16 12 C 0.09 2.27 7.11 22.39 0.16 2.43 16 13 F -0.14 -3.99 16.23 44.97 0.73 -3.26 16 14 C 0.14 5.26 3.36 46.18 0.16 5.42 16 15 H 0.08 3.35 6.99 -2.39 -0.02 3.33 16 16 C -0.13 -5.19 6.61 31.99 0.21 -4.98 16 17 C 0.16 7.93 5.89 86.86 0.51 8.44 16 18 N -0.62 -32.36 3.39 -691.99 -2.35 -34.71 16 19 C -0.24 -13.46 10.27 84.03 0.86 -12.60 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 21 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 22 N -0.95 -56.60 10.09 21.65 0.22 -56.39 16 23 Si 0.98 45.28 29.55 68.60 2.03 47.31 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C 0.13 5.63 6.88 86.73 0.60 6.23 16 28 H 0.07 1.25 7.89 -2.39 -0.02 1.23 16 29 H 0.07 1.58 6.08 -2.38 -0.01 1.56 16 30 H 0.11 1.24 6.44 -2.39 -0.02 1.23 16 31 H 0.15 1.36 7.97 -2.39 -0.02 1.34 16 32 H 0.12 1.73 7.20 -2.39 -0.02 1.71 16 33 H 0.17 1.28 8.04 -2.91 -0.02 1.26 16 34 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.16 1.54 8.06 -2.92 -0.02 1.52 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.08 2.95 6.09 -2.39 -0.01 2.93 16 38 H 0.08 4.58 5.87 -2.38 -0.01 4.57 16 39 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.05 1.77 6.94 -2.39 -0.02 1.75 16 42 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -76.52 360.41 4.83 -71.69 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.05 Total: 7.17 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.63 Total: 10.86 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -4.48 Total: -110.32 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.73 Total: -3.26 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -76.52 4.83 -71.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033451702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.310 kcal (2) G-P(sol) polarization free energy of solvation -76.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds