Wall clock time and date at job start Sat Apr 11 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.50703 * 109.47148 * 180.28037 * 5 3 2 7 7 C 1.38456 * 120.02327 * 89.99749 * 6 5 3 8 8 F 1.35101 * 120.01567 * 359.97438 * 7 6 5 9 9 C 1.38444 * 119.96641 * 180.02562 * 7 6 5 10 10 C 1.38232 * 119.99809 * 359.97438 * 9 7 6 11 11 C 1.38200 * 120.03785 * 0.02712 * 10 9 7 12 12 C 1.38295 * 120.01602 * 269.72398 * 6 5 3 13 13 Cl 1.73596 * 120.00062 * 359.97438 * 12 6 5 14 14 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 15 15 H 1.08996 * 110.64621 * 178.31865 * 14 2 1 16 16 C 1.55155 * 110.72079 * 54.97542 * 14 2 1 17 17 C 1.54909 * 101.58554 * 277.14221 * 16 14 2 18 18 N 1.47424 * 104.82843 * 322.98896 * 17 16 14 19 19 C 1.36941 * 125.64630 * 204.16193 * 18 17 16 20 20 H 1.08003 * 120.00014 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99958 * 359.95985 * 19 18 17 22 22 N 1.31618 * 120.00304 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47357 * 59.99975 * 23 21 19 25 25 H 1.48500 * 109.47313 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47166 * 299.99797 * 23 21 19 27 27 C 1.47022 * 108.70685 * 24.12881 * 18 17 16 28 28 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 29 29 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 30 30 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 31 31 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 32 32 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 33 33 H 1.07995 * 120.00236 * 179.97438 * 9 7 6 34 34 H 1.07994 * 119.98264 * 179.97438 * 10 9 7 35 35 H 1.07996 * 119.98162 * 179.97438 * 11 10 9 36 36 H 1.08997 * 111.00199 * 35.21823 * 16 14 2 37 37 H 1.09004 * 111.00790 * 159.06303 * 16 14 2 38 38 H 1.08995 * 110.36859 * 204.15195 * 17 16 14 39 39 H 1.09000 * 110.45737 * 81.86989 * 17 16 14 40 40 H 0.97003 * 120.00473 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.88246 * 239.52432 * 27 18 17 42 42 H 1.08998 * 109.88178 * 118.35717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3648 3.6177 -0.0120 7 6 2.8150 4.1384 -1.2133 8 9 2.3769 3.6195 -2.3813 9 6 3.7150 5.1903 -1.2171 10 6 4.1634 5.7206 -0.0218 11 6 3.7140 5.2009 1.1773 12 6 2.8100 4.1531 1.1829 13 17 2.2402 3.5062 2.6897 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0917 -0.0294 16 6 1.7507 -2.1611 -1.1874 17 6 0.4718 -2.8225 -0.6159 18 7 0.7744 -3.0617 0.8070 19 6 0.1819 -4.0072 1.6009 20 1 0.4750 -4.1039 2.6359 21 6 -0.7955 -4.8410 1.0756 22 7 -1.1526 -4.7233 -0.1857 23 14 -1.6032 -6.1312 2.1584 24 1 -2.2763 -5.4661 3.3029 25 1 -2.6066 -6.8856 1.3651 26 1 -0.5693 -7.0673 2.6682 27 6 1.8181 -2.1176 1.2323 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.7588 2.5257 -0.8967 32 1 0.7587 2.5344 0.8833 33 1 4.0669 5.5966 -2.1538 34 1 4.8658 6.5408 -0.0251 35 1 4.0652 5.6156 2.1106 36 1 1.5194 -1.5568 -2.0646 37 1 2.5076 -2.9102 -1.4197 38 1 0.2724 -3.7654 -1.1250 39 1 -0.3811 -2.1511 -0.7147 40 1 -1.8360 -5.3058 -0.5528 41 1 2.6908 -2.6654 1.5880 42 1 1.4348 -1.4729 2.0231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033611240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:20 Heat of formation + Delta-G solvation = -21.031834 kcal Electronic energy + Delta-G solvation = -27601.706298 eV Core-core repulsion = 23523.414701 eV Total energy + Delta-G solvation = -4078.291597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.15042 -40.20602 -39.18745 -37.38507 -36.68685 -34.39856 -33.25293 -32.00509 -30.70679 -29.36573 -28.27788 -27.56867 -26.00847 -24.30228 -23.15331 -22.59072 -20.54877 -20.14338 -18.59839 -17.97816 -17.18664 -17.11358 -16.96703 -16.20751 -15.87627 -15.50729 -15.21095 -14.99685 -14.70572 -14.05588 -13.86158 -13.83979 -13.55051 -13.28391 -13.13365 -12.58039 -12.51709 -12.21962 -12.05830 -11.89139 -11.74127 -11.64170 -11.60022 -11.56836 -11.08749 -11.04819 -10.89201 -10.79425 -10.30678 -10.15939 -9.87304 -9.57899 -9.55094 -9.03729 -8.96231 -8.66825 -8.24740 -6.86752 -5.68105 -3.10161 0.70121 0.76492 1.80839 2.81595 3.03033 3.37591 3.39553 3.43522 3.44359 3.96191 4.21838 4.44334 4.47062 4.53154 4.74191 4.87630 5.06960 5.16159 5.32360 5.42338 5.44314 5.48366 5.54052 5.61454 5.70748 5.73323 5.78865 5.86442 5.87353 5.93956 6.22609 6.31485 6.37432 6.41159 6.57362 6.60678 6.72259 7.03799 7.45218 7.59888 7.71217 7.83019 8.32852 8.39377 9.19086 9.79546 10.44132 11.35246 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.002857 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.958997 B = 9797.406279 C =10496.482837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.591 5.591 3 C 0.519 3.481 4 O -0.543 6.543 5 C -0.109 4.109 6 C -0.087 4.087 7 C 0.125 3.875 8 F -0.129 7.129 9 C -0.150 4.150 10 C -0.082 4.082 11 C -0.121 4.121 12 C 0.003 3.997 13 Cl -0.051 7.051 14 C 0.126 3.874 15 H 0.099 0.901 16 C -0.154 4.154 17 C 0.145 3.855 18 N -0.603 5.603 19 C -0.223 4.223 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.127 3.873 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.022 0.978 40 H 0.252 0.748 41 H 0.032 0.968 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 22.275 -1.124 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.323 5.323 3 C 0.307 3.693 4 O -0.421 6.421 5 C -0.149 4.149 6 C -0.089 4.089 7 C 0.105 3.895 8 F -0.108 7.108 9 C -0.169 4.169 10 C -0.100 4.100 11 C -0.140 4.140 12 C -0.024 4.024 13 Cl -0.022 7.022 14 C 0.023 3.977 15 H 0.117 0.883 16 C -0.194 4.194 17 C 0.020 3.980 18 N -0.329 5.329 19 C -0.351 4.351 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.001 3.999 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.978 21.994 -1.041 23.098 hybrid contribution -0.707 -0.836 0.476 1.194 sum 6.271 21.158 -0.565 22.075 Atomic orbital electron populations 1.22138 0.79102 1.04267 1.02083 1.47755 1.07337 1.05391 1.71833 1.20144 0.87873 0.84771 0.76553 1.90674 1.13658 1.87269 1.50456 1.20713 0.97504 0.90407 1.06238 1.19177 1.00570 0.98127 0.91020 1.17272 0.96803 0.94761 0.80637 1.91526 1.87908 1.85869 1.45459 1.21208 0.98433 0.96913 1.00303 1.20929 0.98866 0.99440 0.90745 1.21078 0.97168 0.96081 0.99625 1.20534 0.98475 0.96634 0.86790 1.98398 1.87732 1.85792 1.30234 1.22144 0.96427 0.82042 0.97098 0.88292 1.23346 1.01555 0.98231 0.96252 1.22121 0.90511 1.00690 0.84653 1.44540 1.42743 1.37649 1.08000 1.19024 1.14875 1.08404 0.92802 0.90593 1.24765 0.99390 0.99848 0.96504 1.69785 1.34035 1.41142 1.12095 0.86162 0.78876 0.81321 0.79176 1.21255 1.21595 1.21192 1.21635 0.92746 0.91412 0.94145 0.92577 0.87743 0.92237 0.87330 0.86981 0.84073 0.84045 0.84213 0.92062 0.91059 0.87687 0.96033 0.93681 0.94990 0.95542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 8.33 59.84 0.50 1.53 16 2 N -0.59 -10.03 2.82 -171.84 -0.49 -10.51 16 3 C 0.52 8.55 7.67 -10.98 -0.08 8.46 16 4 O -0.54 -10.52 15.40 5.55 0.09 -10.43 16 5 C -0.11 -1.39 3.82 -29.03 -0.11 -1.50 16 6 C -0.09 -1.09 4.38 -104.52 -0.46 -1.55 16 7 C 0.12 1.49 7.24 -39.43 -0.29 1.20 16 8 F -0.13 -1.67 16.48 2.25 0.04 -1.63 16 9 C -0.15 -1.36 10.03 -39.51 -0.40 -1.76 16 10 C -0.08 -0.63 10.04 -39.60 -0.40 -1.02 16 11 C -0.12 -1.08 9.83 -39.54 -0.39 -1.47 16 12 C 0.00 0.03 6.31 -39.50 -0.25 -0.22 16 13 Cl -0.05 -0.59 27.29 -51.86 -1.42 -2.01 16 14 C 0.13 2.39 3.58 -66.10 -0.24 2.15 16 15 H 0.10 1.90 6.99 -51.93 -0.36 1.54 16 16 C -0.15 -2.98 6.53 -24.58 -0.16 -3.15 16 17 C 0.14 3.35 5.00 -2.53 -0.01 3.34 16 18 N -0.60 -14.92 2.97 -170.07 -0.50 -15.42 16 19 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 20 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.04 10.09 55.49 0.56 -25.48 16 23 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.13 2.71 6.24 -3.06 -0.02 2.69 16 28 H 0.06 0.81 7.99 -51.93 -0.41 0.39 16 29 H 0.10 1.97 5.19 -51.93 -0.27 1.71 16 30 H 0.06 0.74 6.45 -51.93 -0.33 0.40 16 31 H 0.11 1.22 7.60 -51.92 -0.39 0.83 16 32 H 0.11 1.29 6.16 -51.93 -0.32 0.97 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.11 2.80 5.87 -51.93 -0.30 2.49 16 39 H 0.02 0.51 5.54 -51.93 -0.29 0.22 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -31.29 355.28 -9.13 -40.42 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.19 Total: 0.88 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.55 Total: 2.14 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.43 Total: -51.41 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.42 Total: -2.01 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.29 -9.13 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033611240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.390 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds